TCONS_00008412 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008412
Unique Name	TCONS_00008412
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1661

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000085:455912..459678+
coding sequence from alignment at sc0000085:455912..459678+

transcript sequence

>TCONS_00008412 ID=TCONS_00008412|Name=TCONS_00008412|organism=Clytia hemisphaerica|type=transcript|length=1661bp
GTTTTAGTTCCCGATACAATTTATTTAGAAATCATACAATACATAATCTG
AAAAAATGGATTACGATTTCAAAATGTCAATGaatgagaaaagacaaaag
GTGGAAGACCTGTTTGATTTTGAAGGTTCTAAAGTTGGTAGAGGAACATA
TGGTCATGTTTATAAAGCAAAAGCAAAGGATCCTAATGATGAAAAAGAAT
ATGCTCTGAAAGAAATTGAAGGAACTGGAATTTCTATGTCTGCTTGTAGA
GAAATAGCTcttTTGCGAGAACTGAACCATGCAAATGTGATCACTCTCAG
AAGAGTTTTCTTATCACACTCTGACAGAAAAGTTTGGTTGTTGATTGACT
ATTCTGAGCACGACCTATGGCACATAATTAAGTTTCACCGCAATGCTAAA
GCACACAAGCGACAAGTCAATGTTCAGAAAAGTATGGTCAAATCTTTATT
GTATCAAATCTTGAACGGTATACACTATTTACATGCCAATTGGGTTTTGC
ACAGGGATCTGAAACCTGCCAATATTTTGGTTATGGGTGATGGACCTGAA
CGTGGAACTGTCAAAATTGCTGACATGGGTTTTGCTCGTTTATTCCACTC
ACCCCTGAAGGCTCTAGCCGATCTGGATCCAGTCGTTGTAACATTTTGGT
ATCGTGCACCAGAACTTCTGCTCGGTGCAAGGCATTATACCAAAGCTATA
GATATTTGGGCCATTGGTTGTATATTTGCAGAGCTGTTAACTTCTGAACC
CATTTTCCACTGTCGACAAGAAGATATCAAAACGTCCACACCATATAATC
ATGACCAGTTAGATCGTATTTTTACTGTCATGGGATTCCCTTCAGaaaaa
gattGGCCAGATATTGTTCGTATGCCTGAATATCAAACTTTACTGAAAGA
CTTTCGACGTAATAATTACACTGCAAGTTCACTTGCAAAATATATGGATC
GTCACAAAGTGAAAAATGACAGCAAAGCTTTtattcttttacaaaaatta
ttaaCTATTGATCCAACAAAGAGAATTACCTCAGAGGATGCACTTAATGA
TGAATACTTCAAAGAAGAGCCGACGCCTACTAAAGATGTTTTTCATGGAA
TGACAATACCTTACCCAAAAAGAGAGTTTATTACTGATGACGATAATGAT
AATAAATCGAATAAAAATAGTCAGACAGCAAAAACAAGCACTGGTGGACA
AACTTCGAACCCAAACAAGAGGGCTCGTGTCATGGCACCTGGTCAATCTA
CACAAGACTTTCAgAAACGATATTACCAACACCCACAGCACGCGCAACAC
AACATGCAGCAACATAAACAACAACACAACAAACAGATATCACAACAGCA
ACAGCAACAAGGACAAATGATGGGTCACAGTGGCTCCTCTGCCACTCTGC
ATTACACTTCCAATAATCAGCAGCCGCGATACTGATGATCTTTTTAATCT
TTTCAATAATCAATTACTTTTTATAGTGaagttttattcattttctGTGT
CAGGGATAATGTGCTTAAACTTAACCAGCCATATTATTCTCGAGAAATTT
AGATTCAATCTCAATTAAATTCTCACCAGTTTTCTGTTAAGGATTTTTGT
TTCTGTCAGGGTTTTCATCAAATTATCCAAAAAagatttcctgaattttt
tttactactca

Run BLAST on NCBI

protein sequence of TCONS_00008412-protein

>TCONS_00008412-protein ID=TCONS_00008412-protein|Name=TCONS_00008412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
MDYDFKMSMNEKRQKVEDLFDFEGSKVGRGTYGHVYKAKAKDPNDEKEYA
LKEIEGTGISMSACREIALLRELNHANVITLRRVFLSHSDRKVWLLIDYS
EHDLWHIIKFHRNAKAHKRQVNVQKSMVKSLLYQILNGIHYLHANWVLHR
DLKPANILVMGDGPERGTVKIADMGFARLFHSPLKALADLDPVVVTFWYR
APELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSTPYNHD
QLDRIFTVMGFPSEKDWPDIVRMPEYQTLLKDFRRNNYTASSLAKYMDRH
KVKNDSKAFILLQKLLTIDPTKRITSEDALNDEYFKEEPTPTKDVFHGMT
IPYPKREFITDDDNDNKSNKNSQTAKTSTGGQTSNPNKRARVMAPGQSTQ
DFQKRYYQHPQHAQHNMQQHKQQHNKQISQQQQQQGQMMGHSGSSATLHY
TSNNQQPRY

Run BLAST on NCBI

transcript from alignment at sc0000085:455912..459678+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008412 ID=TCONS_00008412|Name=TCONS_00008412|organism=Clytia hemisphaerica|type=transcript|length=3767bp|location=Sequence derived from alignment at sc0000085:455912..459678+ (Clytia hemisphaerica)
GTTTTAGTTCCCGATACAATTTATTTAGAAATCATACAATACATAATCTG
AAAAAATGGATTACGATTTCAAAATGTCAATGaatgagaaaagacaaaag
GTGGAAGACCTGTTTGATTTTGAAGGTTCTAAAGTTGGTAGAGGAACATA
TGGTCATGTTTATAAAGCAAAAGCAAAGGATCCGTGAGTATGAAATTTCC
TTAAAAGAGAAGATTCAACCCCATAATTCGATAAAAGGCATTGAGCAATG
ATATTTTGTAATCCCTTTTTTTGTTCAGCCAGCACCTTGTCAAAAAGTCA
GACtattaattaaaatcattcttttCGAGGGCTCTGCTTTTATTGAGACA
ATACAGGACCCTTTTTTCATTACAGTAATGATGAAAAAGAATATGCTCTG
AAAGAAATTGAAGGAACTGGAATTTCTATGTCTGCTTGTAGAGAAATAGC
TGTAAGTAATGCTTGGTTTTTTTAGATAAAACGATCTTGGTAATCTTTCA
TTTAAAATGGTTGTAAGGAATGTCTTGAATTgtactttgatttttttatt
tcagcttTTGCGAGAACTGAACCATGCAAATGTGATCACTCTCAGAAGAG
TTTTCTTATCACACTCTGACAGAAAAGTTTGGTTGTTGATTGACTATTCT
GAGCACGACCTATGGgtttgtatttttaatgttattgaatgaaaatgacT
AGTCCtgaaatcattttttaaaagGGCTCCTTCACCTAAACTAGAACCAT
TCTTTAGCTCTTTTTCGATAAAGATTCAAGATTCTTTATGGACCCCATCA
GAGGTCCTTGGAATGAATTTATCTACATTTTTATGCTATACAATTTCTGA
ATATTCTAAACTTGACtcctcaaaatttcatattaaTATTTTAGCACATA
ATTAAGTTTCACCGCAATGCTAAAGCACACAAGCGACAAGTCAATGTTCA
GAAAAGTATGGTCAAATCTTTATTGTATCAAATCTTGAACGGTATACACT
ATTTACATGCCAATTGGGTTTTGCACAGGGATCTGGTAAGTAAATTCCAG
TTCAATAAAACAAATCCttaagaatttttcttttttgagagTAATACCAT
TCaacattctttttcatttctttaactCTTTTGTTTACTCACTACTCTGG
CTTTAGACGATTAACTTTATGCTACTAGAGAGAAAAACATATTAGCTTTC
TAAAAATCTCTTTTAGAAACCTGCCAATATTTTGGTTATGGGTGATGGAC
CTGAACGTGGAACTGTCAAAATTGGTATAATACATTTTTAGCTTCTGACT
GTTAATTTTCGACTACTTATTCCACTGTTTTGCTAGCCTATGGTATCAAC
ATAACTTCAGccttaatttttgaaatattcacaatacaaatcagtttttt
gaaaaattgtttgtttttgttttaaagcaaCTAGTTTTAAAGGCAGATAG
ATGAAATTATATATGACGGATTACACTCAAATAGGGCAGTGAGTGATGCG
ATAATCTACTTAATTCACTTGTCATTATCTGCtgataaaattgatatttt
ctcTTATGTTGTACAGCTGACATGGGTTTTGCTCGTTTATTCCACTCACC
CCTGAAGGCTCTAGCCGATCTGGATCCAGTCGTTGTAACATTTTGGTATC
GTGCACCAGAACTTCTGCTCGGTGCAAGGCATTATACCAAAGCTATAGGT
GATTTATGTTGCTATTTTGCTAAAAATAAGATGTATAGAATGATTTTAAA
ACAAGTTTAACAAAGGTATAAAAATCTGTATCGTTTTTAACCAACCCAAA
ATTATTTGATGCAGTTTTACAAATAATGTAATCTAGCCAAgctcaaaatg
tgaaaaaaaattcaaatggaTCTTAAAAAGTTCTGGGAAGCCATCATGTA
TTTCTCTATATTATTTCTCATTCTCTTCTGAAACAATAATTAACACTTTA
AATTCTCCAGATATTTGGGCCATTGGTTGTATATTTGCAGAGCTGTTAAC
TTCTGAACCCATTTTCCACTGTCGACAAGAAGATATCAAAACGTCCACAC
CATATAATCATGACCAGTTAGATCGTATTTTTACTGTCATGGGATTCCCT
TCAGGTTATTTGTATTTACTTGCCTTAAACTAGCCtattttttcatatta
ttttcaCAGGGTTTGGCTAGAAAATTTCGGGGACTTCCTAGATTATTGCA
CCCAGAGCAGAAATAGCATTTGTATAGTTTTGTTACTGGAAAAGtgttta
tttatgattttttttcttgtcgACTAAAGACCCATCTAGCTGCTAGAACT
TATAGATATTCTGATGGCGGATTGGGTTGGGTCCAGGCTGTAAAAGAGCT
GATTTTGGTTGAACCCACAATTCTCTGTAAACGGGGGTTAGGGTTAAGGC
CTTGCTTTAACatgtcaaaagaaaatttctaccAGATTACTCTAGTTGAT
TTTGATTAGCTtcgagctaagtacacattgtactactttgcatcaacttt
aaagaaaagaaacacaaACATAATCATAAACATTACTCTAGAACAGTCCG
TTGAagcttttactttttattttagaaaaagattGGCCAGATATTGTTCG
TATGCCTGAATATCAAACTTTACTGAAAGACTTTCGACGTAATAATTACA
CTGCAAGTTCACTTGCAAAATATATGGATCGTCACAAAGTGAAAAATGAC
AGCAAAGCTTTtattcttttacaaaaattattaaCTATTGATCCAACAAA
GAGAATTACCTCAGAGGATGCACTTAATGATGAATACTTCAAAGAAGAGC
CGACGCCTACTAAAGATGTTTTTCATGGAATGACAATACCTTACCCAAAA
AGAGAGTTTATTACTGATGACGATAATGATAATAAATCGAATAAAAATAG
TCAGACAGCAAAAACAAGCACTGGTGGACAAACTTCGAACCCAAACAAGA
GGGCTCGTGTCATGGCACCTGGTCAATCTACACAAGACTTTCAggtaatt
tttggacctacttgGAGGTCcaataaattaaccgttgtccgttcgtttgt
ccgtccgtccgttcgtctgttaccagcttttctcgagattggctcattag
ttttttctgatttttggcacaatgatgcaaaatggcaatgcccaaaatgt
gacggagcccgattctcgaaaaaaaaaaattttcggccgaaaatgccgga
aatatgccggaaaaactgtttttttggccttttctcaagattttatcatt
agttttttctgattttttgctcaaagatgcgtattaacaatgcccaaaac
atggcattTTAAATTTCTGTTTAAATAAAAGAGCCACTGTTAATAAGCTA
ATCTCATTTTTTCGTTATAGAAACGATATTACCAACACCCACAGCACGCG
CAACACAACATGCAGCAACATAAACAACAACACAACAAACAGATATCACA
ACAGCAACAGCAACAAGGACAAATGATGGGTCACAGTGGCTCCTCTGCCA
CTCTGCATTACACTTCCAATAATCAGCAGCCGCGATACTGATGATCTTTT
TAATCTTTTCAATAATCAATTACTTTTTATAGTGaagttttattcatttt
ctGTGTCAGGGATAATGTGCTTAAACTTAACCAGCCATATTATTCTCGAG
AAATTTAGATTCAATCTCAATTAAATTCTCACCAGTTTTCTGTTAAGGAT
TTTTGTTTCTGTCAGGGTTTTCATCAAATTATCCAAAAAagatttcctga
attttttttactactca

Coding sequence (CDS) from alignment at sc0000085:455912..459678+

>TCONS_00008412 ID=TCONS_00008412|Name=TCONS_00008412|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at sc0000085:455912..459678+ (Clytia hemisphaerica)
ATGGATTACGATTTCAAAATGTCAATGaatgagaaaagacaaaagGTGGA
AGACCTGTTTGATTTTGAAGGTTCTAAAGTTGGTAGAGGAACATATGGTC
ATGTTTATAAAGCAAAAGCAAAGGATCCTAATGATGAAAAAGAATATGCT
CTGAAAGAAATTGAAGGAACTGGAATTTCTATGTCTGCTTGTAGAGAAAT
AGCTcttTTGCGAGAACTGAACCATGCAAATGTGATCACTCTCAGAAGAG
TTTTCTTATCACACTCTGACAGAAAAGTTTGGTTGTTGATTGACTATTCT
GAGCACGACCTATGGCACATAATTAAGTTTCACCGCAATGCTAAAGCACA
CAAGCGACAAGTCAATGTTCAGAAAAGTATGGTCAAATCTTTATTGTATC
AAATCTTGAACGGTATACACTATTTACATGCCAATTGGGTTTTGCACAGG
GATCTGAAACCTGCCAATATTTTGGTTATGGGTGATGGACCTGAACGTGG
AACTGTCAAAATTGCTGACATGGGTTTTGCTCGTTTATTCCACTCACCCC
TGAAGGCTCTAGCCGATCTGGATCCAGTCGTTGTAACATTTTGGTATCGT
GCACCAGAACTTCTGCTCGGTGCAAGGCATTATACCAAAGCTATAGATAT
TTGGGCCATTGGTTGTATATTTGCAGAGCTGTTAACTTCTGAACCCATTT
TCCACTGTCGACAAGAAGATATCAAAACGTCCACACCATATAATCATGAC
CAGTTAGATCGTATTTTTACTGTCATGGGATTCCCTTCAGaaaaagattG
GCCAGATATTGTTCGTATGCCTGAATATCAAACTTTACTGAAAGACTTTC
GACGTAATAATTACACTGCAAGTTCACTTGCAAAATATATGGATCGTCAC
AAAGTGAAAAATGACAGCAAAGCTTTtattcttttacaaaaattattaaC
TATTGATCCAACAAAGAGAATTACCTCAGAGGATGCACTTAATGATGAAT
ACTTCAAAGAAGAGCCGACGCCTACTAAAGATGTTTTTCATGGAATGACA
ATACCTTACCCAAAAAGAGAGTTTATTACTGATGACGATAATGATAATAA
ATCGAATAAAAATAGTCAGACAGCAAAAACAAGCACTGGTGGACAAACTT
CGAACCCAAACAAGAGGGCTCGTGTCATGGCACCTGGTCAATCTACACAA
GACTTTCAgAAACGATATTACCAACACCCACAGCACGCGCAACACAACAT
GCAGCAACATAAACAACAACACAACAAACAGATATCACAACAGCAACAGC
AACAAGGACAAATGATGGGTCACAGTGGCTCCTCTGCCACTCTGCATTAC
ACTTCCAATAATCAGCAGCCGCGATACTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004716	XLOC_004716	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00008412-protein	TCONS_00008412-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000085	supercontig	sc0000085:455912..459678 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.914	31.8801	16.9034	13.8307	20.4291	15.9872	16.5863	17.4688	12.4362	13.109	9.382	8.10381	9.7338	9.55175	9.71199	11.9709	11.9592	13.9498	7.86999	8.3441	15.9461	14.1386	41.6026	38.0011	9.96869	10.1845	14.641	10.7267	30.7535	29.7028

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR008271	Ser/Thr_kinase_AS
IPR017441	Protein_kinase_ATP_BS
IPR011009	Kinase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Blast

[Close]

BLAST of TCONS_00008412 vs. Swiss-Prot (Human)
Match: CDK19 (Cyclin-dependent kinase 19 OS=Homo sapiens GN=CDK19 PE=1 SV=1)

HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 288/360 (80.00%), Postives = 321/360 (89.17%), Query Frame = 2

Query:   56 MDYDFKMSMNEKRQKVEDLFDFEGSKVGRGTYGHVYKAKAKDPNDEKEYALKEIEGTGISMSACREIALLRELNHANVITLRRVFLSHSDRKVWLLIDYSEHDLWHIIKFHRNAKAHKRQVNVQKSMVKSLLYQILNGIHYLHANWVLHRDLKPANILVMGDGPERGTVKIADMGFARLFHSPLKALADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSTPYNHDQLDRIFTVMGFPSEKDWPDIVRMPEYQTLLKDFRRNNYTASSLAKYMDRHKVKNDSKAFILLQKLLTIDPTKRITSEDALNDEYFKEEPTPTKDVFHGMTIPYPKREFIT 1135
            MDYDFK  +  +R++VEDLF++EG KVGRGTYGHVYKA+ KD  DEKEYALK+IEGTGISMSACREIALLREL H NVI L++VFLSHSDRKVWLL DY+EHDLWHIIKFHR +KA+K+ + + +SMVKSLLYQIL+GIHYLHANWVLHRDLKPANILVMG+GPERG VKIADMGFARLF+SPLK LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTS P++HDQLDRIF+VMGFP++KDW DI +MPEY TL KDFRR  Y  SSL KYM++HKVK DSK F+LLQKLLT+DPTKRITSE AL D YF+E+P PT DVF G  IPYPKREF+ 
Sbjct:    1 MDYDFKAKLAAERERVEDLFEYEGCKVGRGTYGHVYKARRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYFQEDPLPTLDVFAGCQIPYPKREFLN 360

The following BLAST results are available for this feature:

BLAST of TCONS_00008412 vs. Swiss-Prot (Human)

BLAST of TCONS_00008412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CDK19	0.000e+0	80.00	Cyclin-dependent kinase 19 OS=Homo sapiens GN=CDK1...	[more]

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TCONS_00008412 (transcript) - C. hemisphaerica