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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008413 ID=TCONS_00008413|Name=TCONS_00008413|organism=Clytia hemisphaerica|type=transcript|length=3003bpRun BLAST on NCBI protein sequence of TCONS_00008413-protein >TCONS_00008413-protein ID=TCONS_00008413-protein|Name=TCONS_00008413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=946bp MLRTALLNPYKLSKTLIQNTRLASKTSPWKISQTHLNIHSSAISLHPRSRRun BLAST on NCBI transcript from alignment at sc0000085:459997..487696+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008413 ID=TCONS_00008413|Name=TCONS_00008413|organism=Clytia hemisphaerica|type=transcript|length=27700bp|location=Sequence derived from alignment at sc0000085:459997..487696+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000085:459997..487696+ >TCONS_00008413 ID=TCONS_00008413|Name=TCONS_00008413|organism=Clytia hemisphaerica|type=CDS|length=45456bp|location=Sequence derived from alignment at sc0000085:459997..487696+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008413 vs. Swiss-Prot (Human)
Match: LONM (Lon protease homolog, mitochondrial OS=Homo sapiens GN=LONP1 PE=1 SV=2) HSP 1 Score: 1036.94 bits (2680), Expect = 0.000e+0 Identity = 530/846 (62.65%), Postives = 662/846 (78.25%), Query Frame = 3
Query: 366 FNALAQINVPENYPTVPVIPLYRNPVFPKFVKLVEISNQWLMDLLRKNQKLAQPYAGAFLRKDES-DSDVIKSLDEIYHTGTFVQITEMHDTGDKIRMIINGHRRISVTGVASIENESESDPAEDLFDKSEFVTTSEKDEGFVEEEICKKHENEAEMNGSEAASEEKPILMVNVENVVDEKYQQDQELKAASAEVIKTIRDIIAMNPLYKESLSQLIEAGKRVVDNPTHLADFGAALTSADAAQLQEVLEEIEIPKRXXXXXXXXXXXXXXXXXQQRLGKEVEEKVNKMQRKYLLQEQXXXXXXXXXXXXXXXXTVIEKFRSRLEPLTVPXXXXXXXXXXXXXLSFLDNHSSEFSVTRNYLDWLTSLPWGLNSEDLLDLKRAREILDEDHYGLDDIKNRVLEFIAVGILSKNIRGKILCFTGPPGVGKTSIGKSIARSLNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGHQGDPSSALLELLDPEQNVNFLDHYLDVPVDLSKVLFICTANTQETIPGPLRDRMEMINVSGYVEDEKMGIAKQYLIPQAQQNAGMDDQMIDLSEDSVLNLIKMYCRESGVRNLQKHIEKIFRKGALKYVMNEKEKVFVTPDNLKDFVGNPVFNAEKMYDNTPPGVSVGLAWTSMGGSTLFIETAIVAKSQENKDDGSRGRLETTGQLGDVMKESCRIAYTFSKSFLLQQDSSNDFFDNNSVHLHVPEGATPKDGPSAGSTIITAFLSLAMNQPIKQHLAMTGEVSLTGKILPVGGIKEKLIAARRSGMKTVLLPEGNRKDYNDLQDFIKNGLDVRFMNDYNDVFREAF 2900
AL + +P+ +P +P+I + RNPVFP+F+K++E+ N+ L++LLR+ +LAQPY G FL++D+S +SDV++SLDEIYHTGTF QI EM D GDK+RMI+ GHRR+ ++ + +K + S++ + E+E+ +H E M + E +LMV VENVV E +Q +E+KA +AE++KTIRDIIA+NPLY+ES+ Q+++AG+RVVDNP +L+D GAALT A++ +LQ+VLEE IPKRL L LLKKE + LQQRLG+EVEEK+ + RKYLLQEQLKIIKKELGLEK+DKD + EKFR RL+ L VP+ V +V++EE++KL LDNHSSEF+VTRNYLDWLTS+PWG S + LDL RA+ +L+EDHYG++D+K R+LEFIAV L + +GKILCF GPPGVGKTSI +SIAR+LNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRG+QGDPSSALLELLDPEQN NFLDHYLDVPVDLSKVLFICTAN +TIP PLRDRMEMINVSGYV EK+ IA++YL+PQA+ G+D+ LS D + LIK YCRESGVRNLQK +EK+ RK A K V E E V VTP+NL+DFVG PVF E+MYD TPPGV +GLAWT+MGGSTLF+ET++ ++ G LE TGQLG+VMKES RIAYTF+++FL+Q +ND+ + +HLHVPEGATPKDGPSAG TI+TA LSLAM +P++Q+LAMTGEVSLTGKILPVGGIKEK IAA+R+G+ ++LP N+KD+ DL FI GL+V F+ Y ++F AF
Sbjct: 109 ITALTPMTIPDVFPHLPLIAITRNPVFPRFIKIIEVKNKKLVELLRRKVRLAQPYVGVFLKRDDSNESDVVESLDEIYHTGTFAQIHEMQDLGDKLRMIVMGHRRVHIS-----RQLEVEPEEPEAENKHKPRRKSKRGKKEAEDELSARHPAELAMEPTPELPAE--VLMVEVENVVHEDFQVTEEVKALTAEIVKTIRDIIALNPLYRESVLQMMQAGQRVVDNPIYLSDMGAALTGAESHELQDVLEETNIPKRLYKALSLLKKEFELSKLQQRLGREVEEKIKQTHRKYLLQEQLKIIKKELGLEKDDKDAIEEKFRERLKELVVPKHVMDVVDEELSKLGLLDNHSSEFNVTRNYLDWLTSIPWGKYSNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEMINVSGYVAQEKLAIAERYLVPQARALCGLDESKAKLSSDVLTLLIKQYCRESGVRNLQKQVEKVLRKSAYKIVSGEAESVEVTPENLQDFVGKPVFTVERMYDVTPPGVVMGLAWTAMGGSTLFVETSLRRPQDKDAKGDKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGLEVHFVEHYREIFDIAF 947 The following BLAST results are available for this feature:
BLAST of TCONS_00008413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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