TCONS_00008476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008476
Unique NameTCONS_00008476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008476 ID=TCONS_00008476|Name=TCONS_00008476|organism=Clytia hemisphaerica|type=transcript|length=1563bp
AGAATTTCGAATGTCAAACTAAACATTCCTTCGGTAAAAAAGGAATCATC
GAGACACCAAATTTCCCACAACATTACCCAAACAATGCCGATTGTACTTG
GGTTATCGAGACACCTAAAGAATTTACCGAGATCCGTGTCCGGTTTGTAC
AATTCAACGTTGAAAACGTCCGATGGTCAAAACTTTGTATCAAAGACTCA
CTGGAGGTATTCCAATACCATGGCCTTGATAAAGAGAAGAAAGGTCGATA
CTGTGGGAAACAAAACGACAAAGAAGTGACTATATACGGAAATAAAGCAG
AATTCCGCTTCCAAAGTAATGGATACCGGGCGAGAAGAGGTTTCCGTATT
GAATGGGAAGCAGTTAAAGGATGTGGTGGAGTTATAGAGCACGAAACTAA
TGGCAAGATTGTTCTTCCAAAATACTCCAAAACAGAAAAATTGGTTCATT
GCACTTGGGAAATTCATGCACCGAAGAATCAcaataaatttgaattagat
GTCAGCAAGTTGCATTTACCACATAAGGGATATGGTGGTTGCAgTAAAAC
ATCAGTAGAGGTCATGGACGCAAATGATCAAGTCCTTTCTAAATTCTGTC
ACTCACTCAATACACACAAAACGATAACAATTCACGGAAAAATGTTTCGA
GTTCGCGTCAAAATTAATCGTAAAACAAAACGTACCGTCTTTCGTGCATC
ATGGACAACGTCGTCCCGTAAATTACCAAAGCCGTATACCGGACAATGCG
GGCGCCCTTATATGGAAGTTGTACCGGAAAGCATATTGCGTGATATAGTG
AACAACGAACAACGACATCGTAGAGCGAGGCGACTTGTAGGAGGAACTCC
TGTCTCAAGAGGCGAATGGCCTTGGATTGTACAGATTCAAACCACGTTGT
TGACAAAGCATTTTTCAACACGTACTGTAACCTGCGGAGGAGTAATTGTA
TCACCAACACACATTTTAACGGCTGCTCATTGCATCAAGCGAAAAGACGA
AGAAGTTATTCAACATGATCTAATATTTGGCTCCTCTTTTGAAGGAAATA
CAGATCAAAAAACATTACACGTTGACCCAAGACAAATTACAGTTCATCCT
AAATTCACCATTGatccaaaatcaggaaaaccTCAAAACGATATCGCAAT
TATCCAATTAAAAGACCAATTAAAATTTGGTTACGATTTACAGCCTGTCT
GTTTACCTTCAATCAAAGACAAAGAAGatgaaaattgtcattttgctGGC
TGGGGAAAGACAAGTGAAAATAGCCTACAAAGTAAAACTGTTAATAGCAT
TCAGGCTAGATTATGGGGACATTGTGATCGTTCACCGTCCGTGATTTGTG
CGACGTACGACGGTGAAAAGGCCGGTGCTTGTAAAGGAGACTCGGGATCG
CCTTTAGTATGCACACGTAAGAATGGTAGCAAATATTTGGTTGGTATATT
ATCATATGGAGGGAGGACTTGTCCTTCTTTGGTCGATGGACATATGGATG
TTAGGTATTATATGGATTGGATTGTTAATGTTATGCAGAACAAGAGCATC
AATTCATAGATTC
Run BLAST on NCBI

protein sequence of TCONS_00008476-protein

>TCONS_00008476-protein ID=TCONS_00008476-protein|Name=TCONS_00008476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=518bp
NFECQTKHSFGKKGIIETPNFPQHYPNNADCTWVIETPKEFTEIRVRFVQ
FNVENVRWSKLCIKDSLEVFQYHGLDKEKKGRYCGKQNDKEVTIYGNKAE
FRFQSNGYRARRGFRIEWEAVKGCGGVIEHETNGKIVLPKYSKTEKLVHC
TWEIHAPKNHNKFELDVSKLHLPHKGYGGCSKTSVEVMDANDQVLSKFCH
SLNTHKTITIHGKMFRVRVKINRKTKRTVFRASWTTSSRKLPKPYTGQCG
RPYMEVVPESILRDIVNNEQRHRRARRLVGGTPVSRGEWPWIVQIQTTLL
TKHFSTRTVTCGGVIVSPTHILTAAHCIKRKDEEVIQHDLIFGSSFEGNT
DQKTLHVDPRQITVHPKFTIDPKSGKPQNDIAIIQLKDQLKFGYDLQPVC
LPSIKDKEDENCHFAGWGKTSENSLQSKTVNSIQARLWGHCDRSPSVICA
TYDGEKAGACKGDSGSPLVCTRKNGSKYLVGILSYGGRTCPSLVDGHMDV
RYYMDWIVNVMQNKSINS
Run BLAST on NCBI

transcript from alignment at sc0000085:408770..411700-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008476 ID=TCONS_00008476|Name=TCONS_00008476|organism=Clytia hemisphaerica|type=transcript|length=2931bp|location=Sequence derived from alignment at sc0000085:408770..411700- (Clytia hemisphaerica)
AGAATTTCGAATGTCAAACTAAACATTCCTTCGGTAAAAAAGGAATCATC
GAGACACCAAATTTCCCACAACATTACCCAAACAATGCCGATTGTACTTG
GGTTATCGAGACACCTAAAGAATTTACCGAGATCCGTGTCCGGTTTGTAC
AATTCAACGTTGAAAACGTCCGATGGTCAAAACTTTGTATCAAAGACTCA
CTGGAGGTATTCCAATACCATGGCCTTGATAAAGAGAAGAAAGGTCGATA
CTGTGGGAAACAAAACGACAAAGAAGTGACTATATACGGAAATAAAGCAG
AATTCCGCTTCCAAAGTAATGGATACCGGGCGAGAAGAGGTTTCCGTATT
GAATGGGAAGCAGTTAAAGGTCAGACTTCATTCGTTAATTCAATTCCAAA
CCTTTGAGTAGCCATCCTTACATACAGTCAACTCTCTGTAATTCGAACTT
CGATTATTCGAATCTCTCTTTAATTCGAACTGAAATATTAGTACCCTCAG
ATTCTCTCCATAATCTAAATCTTTCTACAATTCGAAAATAATCCTCGGCT
CCTTGAAATTTATCACGGTCATTGATTCTTCTGACATTCAAAACAATTAT
TCAAACACTTCCCATTTCTTTGCCCTTTCGATAGCGGAAAAAATCAGAAT
TCGCCTTGTTTGAGCGGCAAAACTGCTCTGTTTAGGGGTAATTATGAATG
TCCGAGGGGTCAACTGATGTTTGTCCGGGGGATTAGATCTGTTGTCCGGG
GGGTAAAAAGTTACTATGTCCGGGGGGTAAATTTCAAAGAAAATTTATAT
CCTCCACCAATAACAATAGTTGACTTTAACCGAAGTATTTAGATTCAGCA
CTGACTTGATCAACATAATCCATTGAATATGTAGAAAATGTTATTATTCT
TATACAGGATGTGGTGGAGTTATAGAGCACGAAACTAATGGCAAGATTGT
TCTTCCAAAATACTCCAAAACAGAAAAATTGGTTCATTGCACTTGGGAAA
TTCATGCACCGAAGAATCACAATAAATTTGAATTAGATGTCAGCAAGTTG
CATTTACCACATAAGGGATATGGTGGTTGCAGGTAAAATATTCTTTTGTG
TGACTATCAATGGATGATCTGAGATAACAAATGCAATATAAGAATTGTGC
TATGAGGAAAACACTAAAAAAGCTTCGTTGACAAAAAGAGAAAGCAATTT
TGCATTGACGGAAGAGGGAAAAATGAAAAACTTTTGACCGATTTTACTCA
ACACAGTTGATCCCAAACTCGAAACCAGTCACATATTTTGTTGTTTTATT
CTGATAGCGAAAAATGAATCCTACTTCATACTCTTTGGACTTTTTTCCGA
AGATTATTAAAAAGTAAATGGGTCCCAAGTTTTCAACTATTCCCCAAAAA
AGGTACCCTACAAGGGACTTTGTACAAAGGCACCCTGACTAGCGGCACAT
CCCGCCATATATACCTTTTTACCAATTTCCCCGGGTCACAACCACGCCCA
TCAGTAAAATCAAAAAAATGGTGCCAATATGGCTCTTGTTACGAGATTGA
GATGATTTCAATTATATTTCTTTCAGTAAAACATCAGTAGAGGTCATGGA
CGCAAATGATCAAGTCCTTTCTAAATTCTGTCACTCACTCAATACACACA
AAACGATAACAATTCACGGAAAAATGTTTCGAGTTCGCGTCAAAATTAAT
CGTAAAACAAAACGTACCGTCTTTCGTGCATCATGGACAACGTCGTCCCG
TAAATTACCAAAGCCGTATACCGGACAATGCGGGCGCCCTTATATGGAAG
TTGTACCGGAAAGCATATTGCGTGATATAGTGAACAACGAACAACGACAT
CGTAGAGCGAGGCGACTTGTAGGAGGAACTCCTGTCTCAAGAGGCGAATG
GCCTTGGATTGTACAGGTGAGGTTTAAACATATTTTGCTGTTTTTAACAA
TACGCTTCTACAGCCAAAGCATAACCCAAAAAAATGCCATAGAATTATAC
AGCTTTCCAAAGAAAACAAGAAAAATTCCATTTCAATTTCTTCGGAGAAT
GGAGCGTCAAACAAACCCTATCCGAAATGCANAAAAAATTCCATTTCAAT
TTCTTCGGAGAATGGAGCGTCAAAAAAACCCTATCCGAAATGCGTCCGAC
GCCCCTGATTTATCTAAACAATGAGATTATGTTAATTCACCAAGCATCTG
AGATGTTCAAAAAATTAACCTAATCGTCTTTCTTTCATTATCTTTTTCTT
AGATTCAAACCACGTTGTTGACAAAGCATTTTTCAACACGTACTGTAACC
TGCGGAGGAGTAATTGTATCACCAACACACATTTTAACGGCTGCTCATTG
CATCAAGCGAAAAGACGAAGAAGTTATTCAACATGATCTAATATTTGGCT
CCTCTTTTGAAGGAAATACAGATCAAAAAACATTACACGTTGACCCAAGA
CAAATTACAGTTCATCCTAAATTCACCATTGATCCAAAATCAGGAAAACC
TCAAAACGATATCGCAATTATCCAATTAAAAGACCAATTAAAATTTGGTT
ACGATTTACAGCCTGTCTGTTTACCTTCAATCAAAGACAAAGAAGATGAA
AATTGTCATTTTGCTGGCTGGGGAAAGACAAGTGAAAATAGCCTACAAAG
TAAAACTGTTAATAGCATTCAGGCTAGATTATGGGGACATTGTGATCGTT
CACCGTCCGTGATTTGTGCGACGTACGACGGTGAAAAGGCCGGTGCTTGT
AAAGGAGACTCGGGATCGCCTTTAGTATGCACACGTAAGAATGGTAGCAA
ATATTTGGTTGGTATATTATCATATGGAGGGAGGACTTGTCCTTCTTTGG
TCGATGGACATATGGATGTTAGGTATTATATGGATTGGATTGTTAATGTT
ATGCAGAACAAGAGCATCAATTCATAGATTC

Coding sequence (CDS) from alignment at sc0000085:408770..411700-

>TCONS_00008476 ID=TCONS_00008476|Name=TCONS_00008476|organism=Clytia hemisphaerica|type=CDS|length=1557bp|location=Sequence derived from alignment at sc0000085:408770..411700- (Clytia hemisphaerica)
AATTTCGAATGTCAAACTAAACATTCCTTCGGTAAAAAAGGAATCATCGA
GACACCAAATTTCCCACAACATTACCCAAACAATGCCGATTGTACTTGGG
TTATCGAGACACCTAAAGAATTTACCGAGATCCGTGTCCGGTTTGTACAA
TTCAACGTTGAAAACGTCCGATGGTCAAAACTTTGTATCAAAGACTCACT
GGAGGTATTCCAATACCATGGCCTTGATAAAGAGAAGAAAGGTCGATACT
GTGGGAAACAAAACGACAAAGAAGTGACTATATACGGAAATAAAGCAGAA
TTCCGCTTCCAAAGTAATGGATACCGGGCGAGAAGAGGTTTCCGTATTGA
ATGGGAAGCAGTTAAAGGATGTGGTGGAGTTATAGAGCACGAAACTAATG
GCAAGATTGTTCTTCCAAAATACTCCAAAACAGAAAAATTGGTTCATTGC
ACTTGGGAAATTCATGCACCGAAGAATCACAATAAATTTGAATTAGATGT
CAGCAAGTTGCATTTACCACATAAGGGATATGGTGGTTGCAGTAAAACAT
CAGTAGAGGTCATGGACGCAAATGATCAAGTCCTTTCTAAATTCTGTCAC
TCACTCAATACACACAAAACGATAACAATTCACGGAAAAATGTTTCGAGT
TCGCGTCAAAATTAATCGTAAAACAAAACGTACCGTCTTTCGTGCATCAT
GGACAACGTCGTCCCGTAAATTACCAAAGCCGTATACCGGACAATGCGGG
CGCCCTTATATGGAAGTTGTACCGGAAAGCATATTGCGTGATATAGTGAA
CAACGAACAACGACATCGTAGAGCGAGGCGACTTGTAGGAGGAACTCCTG
TCTCAAGAGGCGAATGGCCTTGGATTGTACAGATTCAAACCACGTTGTTG
ACAAAGCATTTTTCAACACGTACTGTAACCTGCGGAGGAGTAATTGTATC
ACCAACACACATTTTAACGGCTGCTCATTGCATCAAGCGAAAAGACGAAG
AAGTTATTCAACATGATCTAATATTTGGCTCCTCTTTTGAAGGAAATACA
GATCAAAAAACATTACACGTTGACCCAAGACAAATTACAGTTCATCCTAA
ATTCACCATTGATCCAAAATCAGGAAAACCTCAAAACGATATCGCAATTA
TCCAATTAAAAGACCAATTAAAATTTGGTTACGATTTACAGCCTGTCTGT
TTACCTTCAATCAAAGACAAAGAAGATGAAAATTGTCATTTTGCTGGCTG
GGGAAAGACAAGTGAAAATAGCCTACAAAGTAAAACTGTTAATAGCATTC
AGGCTAGATTATGGGGACATTGTGATCGTTCACCGTCCGTGATTTGTGCG
ACGTACGACGGTGAAAAGGCCGGTGCTTGTAAAGGAGACTCGGGATCGCC
TTTAGTATGCACACGTAAGAATGGTAGCAAATATTTGGTTGGTATATTAT
CATATGGAGGGAGGACTTGTCCTTCTTTGGTCGATGGACATATGGATGTT
AGGTATTATATGGATTGGATTGTTAATGTTATGCAGAACAAGAGCATCAA
TTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004734XLOC_004734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008476-exon-sc0000085-1575043694:411332..411700TCONS_00008476-exon-sc0000085-1575043694:411332..411700Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1575043694:410619..410793TCONS_00008476-exon-sc0000085-1575043694:410619..410793Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1575043694:409785..410124TCONS_00008476-exon-sc0000085-1575043694:409785..410124Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1575043694:408770..409448TCONS_00008476-exon-sc0000085-1575043694:408770..409448Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1510915933:411332..411700TCONS_00008476-exon-sc0000085-1510915933:411332..411700Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1510915933:410619..410793TCONS_00008476-exon-sc0000085-1510915933:410619..410793Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1510915933:409785..410124TCONS_00008476-exon-sc0000085-1510915933:409785..410124Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1510915933:408770..409448TCONS_00008476-exon-sc0000085-1510915933:408770..409448Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1491911889:411332..411700TCONS_00008476-exon-sc0000085-1491911889:411332..411700Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1491911889:410619..410793TCONS_00008476-exon-sc0000085-1491911889:410619..410793Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1491911889:409785..410124TCONS_00008476-exon-sc0000085-1491911889:409785..410124Clytia hemisphaericaexon
TCONS_00008476-exon-sc0000085-1491911889:408770..409448TCONS_00008476-exon-sc0000085-1491911889:408770..409448Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008476-proteinTCONS_00008476-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:408770..411700 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0262022	0	0	0.029025	0.671367	0.86559	0.101061	0.0630748	0.198721	0.519645	0.159278	0.261758	0.470509	1.21252	2.00859	2.73033	2.93081	3.24592	0.111414	0.320613	2.07737	1.44576	0.871244	0.682834	2.16617	2.18433	31.6888	25.882	30.1003	36.949
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR000859CUB_dom
IPR033116TRYPSIN_SER
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00008476 vs. Swiss-Prot (Human)
Match: OVCH1 (Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 6.297e-27
Identity = 130/466 (27.90%), Postives = 197/466 (42.27%), Query Frame = 3 
Query:  228 DKEKKGRYCGKQNDKEVTIYGNKAEFRFQSNGYRARRGFRIEWEAVK------GCGGV---IEHETNGKIVLPKYSKTEKLVHCTWEIHAPKNHNKFELDVSKLHLPHKGYGGCSKTSVEVMDANDQV--LSKFCHSLNTHKTITIHGKMFRVRVKINRKTKRTVFRASWTT-SSRKLPK--PYTGQCGRPYMEVVPESILRDI--VNNEQRHRRARRLVGGTPVSRGEWPWIVQIQTTLLTKHFSTRTVTCGGVIVSPTHILTAAHCIKRKDEEVIQHDLIFGSSFEGNTDQKTLHVD-PRQITVHPKFTIDPKSGKPQNDIAIIQLKDQLKFGYDLQPVCLPSIKDK--EDENCHFAGWGKTSENS-----LQSKTVNSIQARLWGHCDRSP-------SVICATY--DGEKAGACKGDSGSPLVCTRKNGSKYLVGILSYG-GRTCPSLVDGHMDVRYYMDWI 1523
            D ++  R CGK     +    ++A   F S+   +  GF +   AV+      GCG +   +E  TN     P    +   + C W I AP+ H    + ++      K    C   +V +   +++   L+K C  L T  +I     M  +  K + K +   F+A +T   S  L K  P       P   V  ++IL D+  +        +RR+ GG       WPW  Q+    L  +       CGG I++P  ILTAAHC++ K+  +     I     + N  + T  V   + I VH  F     +    +DIA+IQL   L++   ++PVCLP   +     E C   GWG  S +      LQ   V+ ++  +  H   S         +ICA +   GEK   C+GDSG PLVC  +NG   L GI+S+G G   P        V  ++DWI
Sbjct:  365 DGKQNKRVCGKILPSPLLAETSEAMVPFVSDTEDSGSGFELTVTAVQKSEAGSGCGSLAILVEEGTNHSAKYPDLYPSN--IRCHWFICAPEKHI---IKLTFEDFAVKFSPNCIYDAVVIYGDSEEKHKLAKLCGML-TITSIFSSSNMTVIYFKSDGKNRLQGFKARFTILPSESLNKFEPKLPPQNNPVSTV--KAILHDVCGIPPFSPQWLSRRIAGGEEACPHCWPW--QVGLRFLGDY------QCGGAIINPVWILTAAHCVQLKNNPLSW--TIIAGDHDRNLKESTEQVRRAKHIIVHEDFN----TLSYDSDIALIQLSSPLEYNSVVRPVCLPHSAEPLFSSEICAVTGWGSISADGGLASRLQQIQVHVLEREVCEHTYYSAHPGGITEKMICAGFAASGEK-DFCQGDSGGPLVCRHENGPFVLYGIVSWGAGCVQPWKPGVFARVMIFLDWI 807

HSP 2 Score: 89.3521 bits (220), Expect = 1.601e-18
Identity = 61/213 (28.64%), Postives = 102/213 (47.89%), Query Frame = 3 
Query:  870 PWIVQIQTTLLTKHFSTRTVTCGGVIVSPTHILTAAHCIKRKDEEVIQHDLIFGSSFE-GNTDQKTLHVDPRQITVHPKFTIDPKSGKPQNDIAIIQLKDQLKFGYDLQPVCLPSIKDKEDEN--CHFAGWGKTSENSLQSKTVNSIQARLWGHCDRS--------------PSVICATYDGEKAGACKGDSGSPLVCTRKNGSKYLVGILSY 1457
            PW V +++     HF      CGG ++    ++TAAHC+    E+ +++  +    +     D++  ++   +I  HP++           DIA++ LK ++KFG  +QP+CLP   DK +    C  +GWGK S+ S  S  +  ++  +    DR+               +++CA +      AC+GDSG PLVC R  G   L GI S+
Sbjct:   59 PWQVSLKSD--EHHF------CGGSLIQEDRVVTAAHCLDSLSEKQLKNITVTSGEYSLFQKDKQEQNIPVSKIITHPEYN---SREYMSPDIALLYLKHKVKFGNAVQPICLPDSDDKVEPGILCLSSGWGKISKTSEYSNVLQEMELPIMD--DRACNTVLKSMNLPPLGRTMLCAGFPDWGMDACQGDSGGPLVCRRGGGIWILAGITSW 258
The following BLAST results are available for this feature:
BLAST of TCONS_00008476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OVCH16.297e-2727.90Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2[more]
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