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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008494 ID=TCONS_00008494|Name=TCONS_00008494|organism=Clytia hemisphaerica|type=transcript|length=1307bp
attttgacccacgaacccacgaacccacgagacaTTTTAACCCACGAACA
CCCACGATGGCACGAACCCACGACACGCACGTAACCCACGTAATTAAGCA
GACTCTTCGTTTGTTTTTAGCGCGTTTGCTTGTTCATGATATTTAATCGT
CATTTCGTTCGTTCGCTCACTTGCTTTAATCCATTTGTTTCGGGTACCCA
TTTGTTTCTCGTTACATCGATTATTCGTTCGCTCACACAAAGCCTTCATA
AAGATATTGCGAAAGATTCGAGCTGTTTTTGTGATTTCAAGTCGGTCATG
TTCGTGTAGTGCATTGAATTGTTTTATCTATTGTGGTGCTAAACTTCATT
GATCTCGCACTTCGCCCCATGCCTCCTGCCCTGTaaagtttcaaaacttt
tttattgaaCACGAacaaaaaacatagaaataagCCTTTCAAACTCCTTG
TGGTAGAATAGATGATTGACAATACCAGATTCAAAGTCCTGGACTTTTCA
CCAGGAATCTGAATAAATCCAAGAATCTCGATCAATCCTAACCCAATCGT
CAGTTTCATTACAATCCTCATAATATTGACGTTATTTTGTTTGTTCTCCA
ATGTTATGTTACAATCTTTTTTCGTTTTCTGAATCTTGAGAAAGGTCTTC
AGTAATATTGCAGTTATCAGAGAGTATTGTATACCCATTGGTACAATATA
TGACCAAAGTCGAGCTTCAAAATCTTCAATCCAACAAATATCCTCATATC
CTGCTTCGATGTCACCAAGAATATCCAAGGTAACAACTGGTGCCACAAAC
AATAAAGGTGTGGTTGAAGCAATCACCAGATACTTAAGAAGTGTTTTCGT
TTTGTTTCTTTTGCTTCTTGAGATTGAAGAATGCATTGTAAGCGCAAAAT
CAAAGCAAATAATGGCCACCCAAAACTGCGATTCAAGAAATAAGTAATGC
ATAAGAATGCCAAAATATCTACAAAGCTTAGTGCCATAGTATGTTTTCTt
tgtgatgaaaatcaaatctGAGATCAGAAGACTGAATACTAAAACCATAG
TATTGAGTCCAGGGATGTTTTGTAGTTCTTTGAACTTCAAATATGTGAAG
AGGATTACGACGTAACAAAGTAAACTGATGCTGTTACCAACCATGACAAT
ATAACGTTCCATTTCACCAAAGATTTCATATTCAGaacctgcagggagat
ttttcgtTGAGTTATTGAACGTGGAGTTTTGTGTGTTATTAAGAACGTCC
TTGGTCTTTATAGTTGCAGTTCTGTCTTGGAAAAGATGAATTTTTCCTGA
ATAGTCA Run BLAST on NCBI protein sequence of TCONS_00008494-protein >TCONS_00008494-protein ID=TCONS_00008494-protein|Name=TCONS_00008494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
DYSGKIHLFQDRTATIKTKDVLNNTQNSTFNNSTKNLPAGSEYEIFGEME
RYIVMVGNSISLLCYVVILFTYLKFKELQNIPGLNTMVLVFSLLISDLIF
ITKKTYYGTKLCRYFGILMHYLFLESQFWVAIICFDFALTMHSSISRSKR
NKTKTLLKYLVIASTTPLLFVAPVVTLDILGDIEAGYEDICWIEDFEARL
WSYIVPMGIQYSLITAILLKTFLKIQKTKKDCNITLENKQNNVNIMRIVM
KLTIGLGLIEILGFIQIPGEKSRTLNLVLSIIYSTTRSLKGLFLCFLFVF
NKKVLKLYRAGGMGRSARSMKFSTTIDKTIQCTTRT Run BLAST on NCBI transcript from alignment at sc0000085:70843..72149 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008494 ID=TCONS_00008494|Name=TCONS_00008494|organism=Clytia hemisphaerica|type=transcript|length=1307bp|location=Sequence derived from alignment at sc0000085:70843..72149 (Clytia hemisphaerica)
TGACTATTCAGGAAAAATTCATCTTTTCCAAGACAGAACTGCAACTATAA
AGACCAAGGACGTTCTTAATAACACACAAAACTCCACGTTCAATAACTCA
acgaaaaatctccctgcaggttCTGAATATGAAATCTTTGGTGAAATGGA
ACGTTATATTGTCATGGTTGGTAACAGCATCAGTTTACTTTGTTACGTCG
TAATCCTCTTCACATATTTGAAGTTCAAAGAACTACAAAACATCCCTGGA
CTCAATACTATGGTTTTAGTATTCAGTCTTCTGATCTCagatttgatttt
catcacaaAGAAAACATACTATGGCACTAAGCTTTGTAGATATTTTGGCA
TTCTTATGCATTACTTATTTCTTGAATCGCAGTTTTGGGTGGCCATTATT
TGCTTTGATTTTGCGCTTACAATGCATTCTTCAATCTCAAGAAGCAAAAG
AAACAAAACGAAAACACTTCTTAAGTATCTGGTGATTGCTTCAACCACAC
CTTTATTGTTTGTGGCACCAGTTGTTACCTTGGATATTCTTGGTGACATC
GAAGCAGGATATGAGGATATTTGTTGGATTGAAGATTTTGAAGCTCGACT
TTGGTCATATATTGTACCAATGGGTATACAATACTCTCTGATAACTGCAA
TATTACTGAAGACCTTTCTCAAGATTCAGAAAACGAAAAAAGATTGTAAC
ATAACATTGGAGAACAAACAAAATAACGTCAATATTATGAGGATTGTAAT
GAAACTGACGATTGGGTTAGGATTGATCGAGATTCTTGGATTTATTCAGA
TTCCTGGTGAAAAGTCCAGGACTTTGAATCTGGTATTGTCAATCATCTAT
TCTACCACAAGGAGTTTGAAAGGcttatttctatgttttttgtTCGTGtt
caataaaaaagttttgaaactttACAGGGCAGGAGGCATGGGGCGAAGTG
CGAGATCAATGAAGTTTAGCACCACAATAGATAAAACAATTCAATGCACT
ACACGAACATGACCGACTTGAAATCACAAAAACAGCTCGAATCTTTCGCA
ATATCTTTATGAAGGCTTTGTGTGAGCGAACGAATAATCGATGTAACGAG
AAACAAATGGGTACCCGAAACAAATGGATTAAAGCAAGTGAGCGAACGAA
CGAAATGACGATTAAATATCATGAACAAGCAAACGCGCTAAAAACAAACG
AAGAGTCTGCTTAATTACGTGGGTTACGTGCGTGTCGTGGGTTCGTGCCA
TCGTGGGTGTTCGTGGGTTAAAAtgtctcgtgggttcgtgggttcgtggg
tcaaaat Coding sequence (CDS) from alignment at sc0000085:70843..72149 >TCONS_00008494 ID=TCONS_00008494|Name=TCONS_00008494|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at sc0000085:70843..72149 (Clytia hemisphaerica)
GACTATTCAGGAAAAATTCATCTTTTCCAAGACAGAACTGCAACTATAAA
GACCAAGGACGTTCTTAATAACACACAAAACTCCACGTTCAATAACTCAa
cgaaaaatctccctgcaggttCTGAATATGAAATCTTTGGTGAAATGGAA
CGTTATATTGTCATGGTTGGTAACAGCATCAGTTTACTTTGTTACGTCGT
AATCCTCTTCACATATTTGAAGTTCAAAGAACTACAAAACATCCCTGGAC
TCAATACTATGGTTTTAGTATTCAGTCTTCTGATCTCagatttgattttc
atcacaaAGAAAACATACTATGGCACTAAGCTTTGTAGATATTTTGGCAT
TCTTATGCATTACTTATTTCTTGAATCGCAGTTTTGGGTGGCCATTATTT
GCTTTGATTTTGCGCTTACAATGCATTCTTCAATCTCAAGAAGCAAAAGA
AACAAAACGAAAACACTTCTTAAGTATCTGGTGATTGCTTCAACCACACC
TTTATTGTTTGTGGCACCAGTTGTTACCTTGGATATTCTTGGTGACATCG
AAGCAGGATATGAGGATATTTGTTGGATTGAAGATTTTGAAGCTCGACTT
TGGTCATATATTGTACCAATGGGTATACAATACTCTCTGATAACTGCAAT
ATTACTGAAGACCTTTCTCAAGATTCAGAAAACGAAAAAAGATTGTAACA
TAACATTGGAGAACAAACAAAATAACGTCAATATTATGAGGATTGTAATG
AAACTGACGATTGGGTTAGGATTGATCGAGATTCTTGGATTTATTCAGAT
TCCTGGTGAAAAGTCCAGGACTTTGAATCTGGTATTGTCAATCATCTATT
CTACCACAAGGAGTTTGAAAGGcttatttctatgttttttgtTCGTGttc
aataaaaaagttttgaaactttACAGGGCAGGAGGCATGGGGCGAAGTGC
GAGATCAATGAAGTTTAGCACCACAATAGATAAAACAATTCAATGCACTA
CACGAACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008494-exon-sc0000085-1491911889:70843..72149 | TCONS_00008494-exon-sc0000085-1491911889:70843..72149 | Clytia hemisphaerica | exon |
| TCONS_00008494-exon-sc0000085-1510915933:70843..72149 | TCONS_00008494-exon-sc0000085-1510915933:70843..72149 | Clytia hemisphaerica | exon |
| TCONS_00008494-exon-sc0000085-1575043694:70843..72149 | TCONS_00008494-exon-sc0000085-1575043694:70843..72149 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:70843..72149 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0007166 | cell surface receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
The following BLAST results are available for this feature:
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