TCONS_00008503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008503
Unique NameTCONS_00008503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008503 ID=TCONS_00008503|Name=TCONS_00008503|organism=Clytia hemisphaerica|type=transcript|length=587bp
AAATAAATTACCAGCAATGAAAATGAAACCCCTACTTCCCAAATATAAAT
GTTGAAGACATgctttttttttatgattcaaCCATAGAAGTCAACACTAA
TACTTGGAGAGACGGGGACTCAATTTGTTGTAGATTATCATCTTTGGCCA
CTGGTTTTACGAACACATACATGTTATCGAACTGAAATGACTACCCGTCG
ACTTCACATGGCAAAAACCGTACACAGCGCACTCCATAACCCCGAATGGC
CATCTTTCCTACGTATATCCAAATTAACCAACCCTGACAGAGAGCTGTGC
TCTGAAAAcattattttgcatgatattgaaAACATAAGTTGTGTGGCTGG
TACCTTTGAGCACGAGGGTGCTACACGTTTTAATGATCTACCTATCAACA
CAAAGCATATCGAATCAAAAGATTGTTTTGCAGATCTAGCttggaatttt
tattttgatagggCATTAGCTAAATCAATGAATTCATTTTGATCTTTGAA
ATAATCACCTATCCGAAGTTATCTAAGTATCTCAATACCTAGATTCTTGA
CCGTGTTGCGAATTCTAATGTTTTACTACTTCAAGAT
Run BLAST on NCBI

transcript from alignment at sc0000085:250152..250738

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008503 ID=TCONS_00008503|Name=TCONS_00008503|organism=Clytia hemisphaerica|type=transcript|length=587bp|location=Sequence derived from alignment at sc0000085:250152..250738 (Clytia hemisphaerica)
ATCTTGAAGTAGTAAAACATTAGAATTCGCAACACGGTCAAGAATCTAGG
TATTGAGATACTTAGATAACTTCGGATAGGTGATTATTTCAAAGATCAAA
ATGAATTCATTGATTTAGCTAATGccctatcaaaataaaaattccaaGCT
AGATCTGCAAAACAATCTTTTGATTCGATATGCTTTGTGTTGATAGGTAG
ATCATTAAAACGTGTAGCACCCTCGTGCTCAAAGGTACCAGCCACACAAC
TTATGTTttcaatatcatgcaaaataatgTTTTCAGAGCACAGCTCTCTG
TCAGGGTTGGTTAATTTGGATATACGTAGGAAAGATGGCCATTCGGGGTT
ATGGAGTGCGCTGTGTACGGTTTTTGCCATGTGAAGTCGACGGGTAGTCA
TTTCAGTTCGATAACATGTATGTGTTCGTAAAACCAGTGGCCAAAGATGA
TAATCTACAACAAATTGAGTCCCCGTCTCTCCAAGTATTAGTGTTGACTT
CTATGGttgaatcataaaaaaaaagcATGTCTTCAACATTTATATTTGGG
AAGTAGGGGTTTCATTTTCATTGCTGGTAATTTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004752XLOC_004752Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008503-exon-sc0000085-1491911889:250152..250738TCONS_00008503-exon-sc0000085-1491911889:250152..250738Clytia hemisphaericaexon
TCONS_00008503-exon-sc0000085-1510915933:250152..250738TCONS_00008503-exon-sc0000085-1510915933:250152..250738Clytia hemisphaericaexon
TCONS_00008503-exon-sc0000085-1575043694:250152..250738TCONS_00008503-exon-sc0000085-1575043694:250152..250738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:250152..250738 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187713	0.0915248	0	0	0.253141	0.100018	13.7561	16.9899	7.19728	4.31055	8.40611	10.7825	39.5056	42.3643	11.7249	15.0918	0.775035	1.7332	35.9031	24.4717	0.181492	0	0.430456	0.0978367	0.10077	0.179869	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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