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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008531 ID=TCONS_00008531|Name=TCONS_00008531|organism=Clytia hemisphaerica|type=transcript|length=2285bp
AAATGGTAATTCACATTTTGCACTTAATAAAAACAATGTATTCCTTCTGT
TTAAAGTTAGTTTAAGGAATGTTTTGTAAGCAACTAGGTGGTTGAGAAAA
AAGATCGCACGACGTCTTTCACAAACCCGACGTTTCTCGGTAGACACGGC
ATACCGACACAAAGCAAACCCAGAAAAGGACCGACGACGTACGTCAGTAG
GTGTCAACAACAATAACAGTTTTAGTAGACAATTATCAGCACCAGCATCA
GCACCAGAATATCCAACGCAACACCCGAATCCCGAAGAAATGTATCCAGA
CAAAATCAAAGCATGGCTCAATCGTAGCTTGGATGCTTTATCCGTCACAG
TTGAAGAGCAACACGAGAAAGACCAAATTTTTGAGCTAGAGCCGGAAGAT
AAAAACCACCAATCCATAAATAAAGGAACTCGTTGCTCTGTCTCTTCCAG
TGAGGGTTCTACCAGCAGCCATCCAAGCTTCAGTCGCCTTCCAACATTAC
TACAAAATGAATTAAACCAGACAACATCAACACTTATTGACGTCTCATGG
GACATCACAAAGAGTGATTTATTCATTGAAACGGAAGACACTTTATTCCC
AGTGGAAAAGAATTTTATTGCATACGTTTCTGAGAAATTTCAATCGTTGA
TTGAAGAATCGACTTCAATACAGATTGGTGGATCAGTCTTCTTGGTATTG
AACCAATACACGACGAATGAGATAAAAACTGTTTTGGCGTATATCCATGC
ATCTGATGATACACCAATAACTGACCAAAACGTGGCATCTTATTTACAAC
TTGGTGATGAATTTAAAGTACCACGTCTCATTTACCAATGTGAGAAATAT
CTTCGTTCGTCAAAAACCTTCAATCCGGTTATCACATCACATTTAGCAAA
ACAATACCAACTAGATGCTTTATTGGAATTTTCATACAGTGAGATCAGTA
AAATAGATGATATTGAAGATTCCCAAGAATTTCAGTTGTTGGATTCGACA
GCACAGAATCAAATATTGAAATACATTGTTAAACGTTATAAGAAAGCTTC
CAAAACGTTGTCACAGTTTGATGTACATTTATGCAATCACCATGGTGTTG
ACCCTAAGAATAACCAATGTTGTTTTAGAGCTGCAACTTATTCGACAGAA
AATAATCGTATATTTTTGGTTCGCATGGAAAAGCCGGAAGAAAGACTCTT
ATCAAAATTCCAGACCGCTTTAATGTGCGATTCAGAGAAATTGATTAGTT
CTGACACAAATAAAACTACATATAATTCAAAGTTTCATTCagtttagaaa
taaaaaaaacatttatataCAGTTCATAATGTCTATATCAACCAGTGTCA
ACCAGTAAGTCTTCTACTTTATACAAAACTCTTTACAGGAAAGGCACAAA
GCTTCGGTTAGaataagggagtggtcagaaaatttttaacTGTATTTGGA
ATTATTATTTGGATGTTTCTGGAAGGAATGCGGAATAGTAGTTTATACAA
ATGACTTTGGAATTGCTAAAATATCATGTGAATTCTTTGTCACAACAAAA
GgtagaagaaatagaagaagaaattttggcaggaattcaaTTTGGTGGGT
GGtctaaaaattctttttaatgGTAATTTCATTTGGAGGTGAAGAGGAAA
AGATAAATTTAGCGGGAATTTTATTTGGTGGATGAGGgttatttttggcc
aaaaaaactattaaataaacaaaaaactgttttaagaAATGAAATAGCAT
AATAGTTCAACTCTAATAATTTTGGGAATGAATGAAATAATTTAAATATT
GTTGGAATTTGATCGTAGTCgcacggtcaggcgcgtgccactttattatt
taatttaccaccctaaactcgatctaatccttttttttacacttttttct
attgtctgtAAGTGCAAAagaaaagactgggacggttttagggtggtaaa
acggacaaaaaatgccttGTGCAATAATTggcggtcgaaaaggtgtatta
gtcCACGAAAGTTGACAATAACTCTATTAGGATTTTACAAATACTGTTTA
GGGATTGAATATAATAAAGAACCTTGAAACTGATCACTATAGCCTTTACC
AGGAAATTTTTGGTTATAAATACTCTCTGTATTTTTGTGAACTTtcgagg
aaaaaatatttttaaactgaaaattgTACATATTGTAAATAGGTGTATAA
AGTTTTAACAATggttttttttgtatttaatattttttatgtttgtttta
aaaatttctgtcATAAATCTTAATTTACACAAAAC Run BLAST on NCBI transcript from alignment at sc0000086:62993..67995+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008531 ID=TCONS_00008531|Name=TCONS_00008531|organism=Clytia hemisphaerica|type=transcript|length=5003bp|location=Sequence derived from alignment at sc0000086:62993..67995+ (Clytia hemisphaerica)
AAATGGTAATTCACATTTTGCACTTAATAAAAACAATGTATTCCTTCTGT
TTAAAGTTAGTTTAAGGAATGTTTTGTAAGCAACTAGGTGGTTGAGAAAA
AAGGTGAGATCCCTGTATTTTTTTCACAGTTTTACCGTGACCGAAAAAAA
ACTCGTAGCCTAGCCAGATGATAcagcttttcataaattacgtctcGAGT
TacacttacctcgttttcaagaTATTACCAGGGGAGGTTATAAgagttta
tttttctaaaaaagcgatgcatggTGGGATTGtatcgagtgtattacaat
agaaatctcttaggaattctttgagggaattctattgtaatacactcaaa
acaatcccacaattcatcgcttttttataaaaataaaaaactccgataag
gtctattgccgcgtgggtatttttttgtccgttttaccaaccttaaaccg
tcccagtcttttttttttacctaaagacaatagaaaaagtgtaaaaaaag
gattggatcgagttcaGGGTGATAAATTAAATGATAGTAGCAGGCTACTA
TTGTCGAAAATGTGTATTACCTTATCAATTGTTTCAAAAGGGGGTAGTAC
TCAAAATAATTAATTATAGGTCTTATCTATGTCTTTGACTCTTTTCGCGG
TTATACTTTTGGAAAGAGGTTACACCACAAATTCAAAATCTTACATCTCT
GTCTCACTGAGGTGAAGTGTATTGGGAATGAAATTTTCCAAACAAAGTTT
TCTGGCTAGAGATTGCAAAAAACAATCTTTTAATAAACTCGTTTTCATAC
GAGCCAGTACATTCGTCATAGAGTTTTAGCACTTTAGATCGTTCTtatca
ttttgtcatttttgaggGTGatattgaggtattttaggtgTAATTTTGAT
TACTTGGACCCTTTAATTGCTCGAGATTAAGCAATCCCCGTCTTCGCATT
GTTCtcaaattgttctcattttttggtAATTCtaagcctcattgttctta
atAAAAGTTACCTTTTTGAAACAGGAGTGTAACCCTTTGTCTAAGGGAAT
GTACATAGTTCTTcggtcaatagacctttttaataaattacgtcacgaac
atcgcttgcctcgttttgaaattattgccaaggtgattaactcccagtgg
attttattaaaactactttctattcataaaaataaTCATTTGATATCTCA
ATATActatggaaattgtttgaatacgaggcaagtgatgtccgcgacgta
atttatgaaaagatctatcgaccataacaaacaaacaaatcttTTTATTT
ATGTCTTTGTTGACATTTTGACGGAAATTCCAACCAAAAGAAATCAATAC
AAAATATACCAGAAATGACATCaggaagaaaatctttttagacgtaaaaa
aagacaaaacaacactgaaaagaagaaaacaatatTTGTTAAAATCTGAC
TATCAACATCATAATAGAATATTGATTAATAGATAATAGATAATGATGCA
TTGTTGcacgaaaacaaaaaacaatgatTATGGTTAGATTCTTCTCTAGT
GAATAGCTTAGTTACTGTAATACTGTAATAATAGGTTACTGTAAATGATA
TAGGACGATATAGAATGCttgactctctctctctctctctaattcgaatt
cgaatctgatcgaatgaaattaaaaatatcatAATATCATATATAAAACA
TTCAGTATACTGTAATAGTTTCtgtaagttcgaattatagaaagatttga
ataaaagaGGTTTTTGTATTAGCGTCCATTATAGAATGCATGCTAAATGG
AAAGGAAATTTACTAAAATTTCTGCGACTAAATTTTCACATCTGCTATAT
TTTATATAGACAATTTATTGAATGTTTTTCCTCCGTTTATTCGAGAAAGG
CGCTCAAAAAAGGAGCgttcatttgaagtaataaggTAATCTTTTTTCTC
TAGATCGCACGACGTCTTTCACAAACCCGACGTTTCTCGGTAGACACGGC
ATACCGACACAAAGCAAACCCAGAAAAGGACCGACGACGTACGTCAGTAG
GTGTCAACAACAATAACAGTTTTAGTAGACAATTATCAGCACCAGCATCA
GCACCAGAATATCCAACGCAACACCCGAATCCCGAAGAAATGTATCCAGG
TATGATTTCTCTTGTTTCAAAACTGTACATTAtcaacaaatttgatttta
gcagggtgaacaaaataattgaaaattgcCATTTTGGAGTGATTTCAGCC
CAAAAAAAGCATTCTAATAAATAGAGCCTCCTGATTATGGATATACAATT
ATTTCTCACGTATAAATCGTTGTATACAAAGTTATAGGCTTTAGAAGGTT
ACTCATTGgagtgaaaaaatatcaaaaaagttCCTACGAGCTACCTTCTA
AAGGCAGACACATTCAATGAAAGAATTTACAATAAAGAAATTATCACTAT
ATCGTGCAATCGGGTACACCAGGTTTATGATCCTGCTGCTTGACATTTCA
CCACATTTGTTCATTTTTAGACAAAATCAAAGCATGGCTCAATCGTAGCT
TGGATGCTTTATCCGTCACAGTTGAAGAGCAACACGAGAAAGACCAAATT
TTTGAGCTAGAGCCGGAAGATAAAAACCACCAATCCATAAATAAAGGAAC
TCGTTGCTCTGTCTCTTCCAGTGAGGGTTCTACCAGCAGCCATCCAAGCT
TCAGTCGCCTTCCAACATTACTACAAAATGAATTAAACCAGACAACATCA
ACACTTATTGACGTCTCATGGGACATCACAAAGAGTGATTTATTCATTGA
AACGGAAGACACTTTATTCCCAGTGGAAAAGAATTTTATTGCATACGTTT
CTGAGAAATTTCAATCGTTGATTGAAGAATCGACTTCAATACAGATTGGT
GGATCAGTCTTCTTGGTATTGAACCAATACACGACGAATGAGATAAAAAC
TGTTTTGGCGTATATCCATGCATCTGATGATACACCAATAACTGGTAAAT
AATATTCATTTAAAATTCTATCCCCAACTGATCGCTTTCTCAAGGAAAGT
TTTCCACCCTAAGAGACTGTTCATCTGCcgtttccagaccatctaaaaag
aacgatgaataactattaaaaagcgacaaaaagaacgactaACCCTAACt
ttaaccctaactatcaaaaacgacatatttcgccgtcccAAACCCCGACC
TTGTTGACTacatattcattactttttgtacTTTACGCTATTTAACAACT
AGCGGCTTAAAGAACGATAAATAACGCATACGtagtctctatttgggtga
gctggaaacattagatgaactaactcTTAATTTGAgatttagaaaacaaa
aacaacgaaTCTGTTACGTTAACGCGTTTAAGATGGAAAAAGCAGTGGCT
TCATTTCCGATTCAAGAGTCTCCTCTCTATCCCCACTGCTTGAGTAGCTT
TCCGAAAGTAAAATAACCATCTTTGTCTCTTTTAATTTCAGACCAAAACG
TGGCATCTTATTTACAACTTGGTGATGAATTTAAAGTACCACGTCTCATT
TACCAATGTGAGAAATATCTTCGTTCGTCAAAAACCTTCAATCCGGTTAT
CACATCACATTTAGCAAAACAATACCAACTAGATGCTTTATTGGAATTTT
CATACAGTGAGATCAGTAAAATAGATGATATTGAAGATTCCCAAGAATTT
CAGTTGTTGGATTCGACAGCACAGAATCAAATATTGAAATACATTGTTAA
ACGTTATAAGAAAGCTTCCAAAACGTTGTCACAGTTTGATGTACATTTAT
GCAATCACCATGGTGTTGACCCTAAGAATAACCAATGTTGTTTTAGAGCT
GCAACTTATTCGACAGAAAATAATCGTATATTTTTGGTTCGCATGGAAAA
GCCGGAAGAAAGACTCTTATCAAAATTCCAGACCGCTTTAATGTGCGATT
CAGAGAAATTGATTAGTTCTGACACAAATAAAACTACATATAATTCAAAG
TTTCATTCagtttagaaataaaaaaaacatttatataCAGTTCATAATGT
CTATATCAACCAGTGTCAACCAGTAAGTCTTCTACTTTATACAAAACTCT
TTACAGGAAAGGCACAAAGCTTCGGTTAGaataagggagtggtcagaaaa
tttttaacTGTATTTGGAATTATTATTTGGATGTTTCTGGAAGGAATGCG
GAATAGTAGTTTATACAAATGACTTTGGAATTGCTAAAATATCATGTGAA
TTCTTTGTCACAACAAAAGgtagaagaaatagaagaagaaattttggcag
gaattcaaTTTGGTGGGTGGtctaaaaattctttttaatgGTAATTTCAT
TTGGAGGTGAAGAGGAAAAGATAAATTTAGCGGGAATTTTATTTGGTGGA
TGAGGgttatttttggccaaaaaaactattaaataaacaaaaaactgttt
taagaAATGAAATAGCATAATAGTTCAACTCTAATAATTTTGGGAATGAA
TGAAATAATTTAAATATTGTTGGAATTTGATCGTAGTCgcacggtcaggc
gcgtgccactttattatttaatttaccaccctaaactcgatctaatcctt
ttttttacacttttttctattgtctgtAAGTGCAAAagaaaagactggga
cggttttagggtggtaaaacggacaaaaaatgccttGTGCAATAATTggc
ggtcgaaaaggtgtattagtcCACGAAAGTTGACAATAACTCTATTAGGA
TTTTACAAATACTGTTTAGGGATTGAATATAATAAAGAACCTTGAAACTG
ATCACTATAGCCTTTACCAGGAAATTTTTGGTTATAAATACTCTCTGTAT
TTTTGTGAACTTtcgaggaaaaaatatttttaaactgaaaattgTACATA
TTGTAAATAGGTGTATAAAGTTTTAACAATggttttttttgtatttaata
ttttttatgtttgttttaaaaatttctgtcATAAATCTTAATTTACACAA
AAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008531-exon-sc0000086-1491911889:62993..63095 | TCONS_00008531-exon-sc0000086-1491911889:62993..63095 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1510915933:62993..63095 | TCONS_00008531-exon-sc0000086-1510915933:62993..63095 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1575043694:62993..63095 | TCONS_00008531-exon-sc0000086-1575043694:62993..63095 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1491911889:64946..65141 | TCONS_00008531-exon-sc0000086-1491911889:64946..65141 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1510915933:64946..65141 | TCONS_00008531-exon-sc0000086-1510915933:64946..65141 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1575043694:64946..65141 | TCONS_00008531-exon-sc0000086-1575043694:64946..65141 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1491911889:65513..65986 | TCONS_00008531-exon-sc0000086-1491911889:65513..65986 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1510915933:65513..65986 | TCONS_00008531-exon-sc0000086-1510915933:65513..65986 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1575043694:65513..65986 | TCONS_00008531-exon-sc0000086-1575043694:65513..65986 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1491911889:66484..67995 | TCONS_00008531-exon-sc0000086-1491911889:66484..67995 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1510915933:66484..67995 | TCONS_00008531-exon-sc0000086-1510915933:66484..67995 | Clytia hemisphaerica | exon |
| TCONS_00008531-exon-sc0000086-1575043694:66484..67995 | TCONS_00008531-exon-sc0000086-1575043694:66484..67995 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:62993..67995 + |
Blast
The following BLAST results are available for this feature:
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