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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008545 ID=TCONS_00008545|Name=TCONS_00008545|organism=Clytia hemisphaerica|type=transcript|length=2643bp
ctttgcacaagcttctgcacacgggaagacatagtggcccctactaTGAT
ATGTTATTCATGTATTCAGTTGTTGTCAATGACATTGAAATGACTATAGC
TACAAGTCTGGTCTCgataattttagtttgatgactAGCTTGATATAAac
agaaattttgaataatttttctggGCTCAACATCAAAACTTCCTGAGTGG
CTTTTTCAACTGTGAAACACAAATATTGAATGTTTGGATGGTGACAAAGA
CTCTagcttattttcattatttgtcctggattccttttgaaaattacttc
atttttattttagtgtCTCAGTACTAGAGTCATGCTCTTCAGTATCAAAG
GCAAGCCCAAAACTAGAGGTACACAAAAGTTTGTCAGGATCTGcgacaaa
atttttgattgcCTAAATGGGCAGTATCCTAACCAAGATATGGCAACAAG
AAAACCGGCAAAACCTGCTCTCAGACAGTTTATATGCACTGTTTGATGAA
ATACGAAGCATTTATTAAGTGGCAAGCAATAGAAATTGCAATTGGTAATT
TGAAATGCTTTCAGTGGGTTCGTTTAGACATCCTGGCATATGTAATTGCt
ttcgattttcttttgtttcaattgTTATACACTATTGTTCAGTTTaccaa
atgcctaatgatgccagcgagCGGTAATTTGAAATGCCATTCTGAGCTAA
GGAATCGCCATTTCTGGCATTTCAAGCTAAACAAAGAAACTAAAACAAAG
AACAAAATTGACATTTGTGACTTGTTGAAGTGTCTGCACGCTTTCTATTC
AGGTTTTTCTATAAACTATAAAATTTGCATCTTTTGCTGTATCTCAAGGC
TACGGCAAGCAGTGGGATaaacaatcaaaataaattctATTTGGAGTAAT
TGGCAATATGCCAGGATATGTAAACGCAACCAGTTTCAGTTTTAGAATAA
AAGAATTGATAGTTAGATACTTTAAatattaaaactaaaatttgtaAAAC
GTAAACATTGACAAAATTGGAGAAAAGAGGGAGCGTCACTTAACATGTCC
AATAAAATTTCCATCACGGATTACActctttatttttataagaaccatga
aATTTGAGCTAAGGTCGTTGAGGCTCAAAccgtttttaaatttttacact
ttcagcctcaaattgttcttaatttgttcttattttttgagtttttttag
cgggcattttttgttttgtttctattATTGCCCTATTTTTACCTTTGTTT
GACGAAAAATAGACATTCCAGCCTTGgacttaaattgttcttaatttttt
accattttgaacctcattgttcttatataaaaagtgtAGTCCGTGAACGG
GCTGTCAAGATGTAAAAACTTttgattgacttgaaattaatCTTTGAAAT
ATAACATTGATAACTAACCACACATAAAAATTATACGGTACTTTTCCGTG
GCTTTCTTGCCACCGTaattttactttcgatttcgaccATCTGTAACACG
TAAACTTGCGCGGGTAAACGCGTTTTGAAATGTCGATTTAGACATTGTAT
CATATGAGCTTTTGAGGTTCCCACAACTACTCAATATCGTCTGTATAATA
ATGCATTgaaccaaaattaaatttaattttgtttCTCGTTTAGCTTCTTA
CATTTCATGGATTGGAAATTGGAACCAGCTTATATCATTTGTACCAATCG
AAGAATGAAATATCAAtgcttttattttttcttgtttaTTGTTAACAATC
ACGAGGCACATTTCGATTtatgtaattcttataaaaaaactgtgtACCCA
GGATAGAATTTTACAAATACCATCTCTCAATTGCacttagaaaatttcaa
aaatttttctttgcacTCTTagagaaacaaaacaaatttttactgCATTT
TGAGTGCCAGATACTGTATATAGCAGATCAAATTTTGTGAAATAATGGTC
TTTTTTGCTTGATGCTTctaatttaaatcaaaattattcTTTGTTCGTAA
TTATAGAATCGTAACAATTTATGACCTTGAATTTGATTTCGAAACTTTTT
GCACCAAACAAAAGATAGATTTTTGAATTCTCTTTGCaaataaattttgt
taaatataattatatttttttttcatttttatataaaCATTTTGCTTTTA
TCACCAATTAAGTATTTTACAATGAAAAGCGTGCCAATTTTAtgataact
tttgaagaaattaatgacaatgttttttaaataagtttATAGACTTTagt
ttttaaaactgttttactACCGCAaattacttttttatgatggaTAGTTG
AAAATATCAAGTTGAGGAAAGATGTTTCTCTACTCTTTTTGACTAATTGT
TAGGGGGTCACTTTGCTACTTTTCCGATTCTTCAACACCACCGCCCCGCC
CCCAATTTCACTTTATTAGGACCCCTcccccattttatgactttttgcct
cgaaattgcctaaaagtgccaaaaaccttcattttcctggGGAAAATCAC
TAAATTCACTCCAATATCACTTTAATGTGacctccccccccccattttat
gactttttgcctcgaaattgcctaaaagtgccaaaaaccttcattttcct
ggGGAAAATCACTAAATTCACTCCAATATCACTTTAATGtgac Run BLAST on NCBI transcript from alignment at sc0000086:340468..343110+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008545 ID=TCONS_00008545|Name=TCONS_00008545|organism=Clytia hemisphaerica|type=transcript|length=2643bp|location=Sequence derived from alignment at sc0000086:340468..343110+ (Clytia hemisphaerica)
ctttgcacaagcttctgcacacgggaagacatagtggcccctactaTGAT
ATGTTATTCATGTATTCAGTTGTTGTCAATGACATTGAAATGACTATAGC
TACAAGTCTGGTCTCgataattttagtttgatgactAGCTTGATATAAac
agaaattttgaataatttttctggGCTCAACATCAAAACTTCCTGAGTGG
CTTTTTCAACTGTGAAACACAAATATTGAATGTTTGGATGGTGACAAAGA
CTCTagcttattttcattatttgtcctggattccttttgaaaattacttc
atttttattttagtgtCTCAGTACTAGAGTCATGCTCTTCAGTATCAAAG
GCAAGCCCAAAACTAGAGGTACACAAAAGTTTGTCAGGATCTGcgacaaa
atttttgattgcCTAAATGGGCAGTATCCTAACCAAGATATGGCAACAAG
AAAACCGGCAAAACCTGCTCTCAGACAGTTTATATGCACTGTTTGATGAA
ATACGAAGCATTTATTAAGTGGCAAGCAATAGAAATTGCAATTGGTAATT
TGAAATGCTTTCAGTGGGTTCGTTTAGACATCCTGGCATATGTAATTGCt
ttcgattttcttttgtttcaattgTTATACACTATTGTTCAGTTTaccaa
atgcctaatgatgccagcgagCGGTAATTTGAAATGCCATTCTGAGCTAA
GGAATCGCCATTTCTGGCATTTCAAGCTAAACAAAGAAACTAAAACAAAG
AACAAAATTGACATTTGTGACTTGTTGAAGTGTCTGCACGCTTTCTATTC
AGGTTTTTCTATAAACTATAAAATTTGCATCTTTTGCTGTATCTCAAGGC
TACGGCAAGCAGTGGGATaaacaatcaaaataaattctATTTGGAGTAAT
TGGCAATATGCCAGGATATGTAAACGCAACCAGTTTCAGTTTTAGAATAA
AAGAATTGATAGTTAGATACTTTAAatattaaaactaaaatttgtaAAAC
GTAAACATTGACAAAATTGGAGAAAAGAGGGAGCGTCACTTAACATGTCC
AATAAAATTTCCATCACGGATTACActctttatttttataagaaccatga
aATTTGAGCTAAGGTCGTTGAGGCTCAAAccgtttttaaatttttacact
ttcagcctcaaattgttcttaatttgttcttattttttgagtttttttag
cgggcattttttgttttgtttctattATTGCCCTATTTTTACCTTTGTTT
GACGAAAAATAGACATTCCAGCCTTGgacttaaattgttcttaatttttt
accattttgaacctcattgttcttatataaaaagtgtAGTCCGTGAACGG
GCTGTCAAGATGTAAAAACTTttgattgacttgaaattaatCTTTGAAAT
ATAACATTGATAACTAACCACACATAAAAATTATACGGTACTTTTCCGTG
GCTTTCTTGCCACCGTaattttactttcgatttcgaccATCTGTAACACG
TAAACTTGCGCGGGTAAACGCGTTTTGAAATGTCGATTTAGACATTGTAT
CATATGAGCTTTTGAGGTTCCCACAACTACTCAATATCGTCTGTATAATA
ATGCATTgaaccaaaattaaatttaattttgtttCTCGTTTAGCTTCTTA
CATTTCATGGATTGGAAATTGGAACCAGCTTATATCATTTGTACCAATCG
AAGAATGAAATATCAAtgcttttattttttcttgtttaTTGTTAACAATC
ACGAGGCACATTTCGATTtatgtaattcttataaaaaaactgtgtACCCA
GGATAGAATTTTACAAATACCATCTCTCAATTGCacttagaaaatttcaa
aaatttttctttgcacTCTTagagaaacaaaacaaatttttactgCATTT
TGAGTGCCAGATACTGTATATAGCAGATCAAATTTTGTGAAATAATGGTC
TTTTTTGCTTGATGCTTctaatttaaatcaaaattattcTTTGTTCGTAA
TTATAGAATCGTAACAATTTATGACCTTGAATTTGATTTCGAAACTTTTT
GCACCAAACAAAAGATAGATTTTTGAATTCTCTTTGCaaataaattttgt
taaatataattatatttttttttcatttttatataaaCATTTTGCTTTTA
TCACCAATTAAGTATTTTACAATGAAAAGCGTGCCAATTTTAtgataact
tttgaagaaattaatgacaatgttttttaaataagtttATAGACTTTagt
ttttaaaactgttttactACCGCAaattacttttttatgatggaTAGTTG
AAAATATCAAGTTGAGGAAAGATGTTTCTCTACTCTTTTTGACTAATTGT
TAGGGGGTCACTTTGCTACTTTTCCGATTCTTCAACACCACCGCCCCGCC
CCCAATTTCACTTTATTAGGACCCCTcccccattttatgactttttgcct
cgaaattgcctaaaagtgccaaaaaccttcattttcctggGGAAAATCAC
TAAATTCACTCCAATATCACTTTAATGTGacctccccccccccattttat
gactttttgcctcgaaattgcctaaaagtgccaaaaaccttcattttcct
ggGGAAAATCACTAAATTCACTCCAATATCACTTTAATGtgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008545-exon-sc0000086-1491911889:340468..343110 | TCONS_00008545-exon-sc0000086-1491911889:340468..343110 | Clytia hemisphaerica | exon |
| TCONS_00008545-exon-sc0000086-1510915933:340468..343110 | TCONS_00008545-exon-sc0000086-1510915933:340468..343110 | Clytia hemisphaerica | exon |
| TCONS_00008545-exon-sc0000086-1575043694:340468..343110 | TCONS_00008545-exon-sc0000086-1575043694:340468..343110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:340468..343110 + |
Blast
The following BLAST results are available for this feature:
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