TCONS_00008580 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008580
Unique Name	TCONS_00008580
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3180

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000086:810525..816494+
coding sequence from alignment at sc0000086:810525..816494+

transcript sequence

>TCONS_00008580 ID=TCONS_00008580|Name=TCONS_00008580|organism=Clytia hemisphaerica|type=transcript|length=3180bp
CAATGAAAAGTCAATGATTCTCAACCAGTCAATGTGATcgagaaaaaaac
agaaaaaatgatatttttctaaaataaatgaaaatttgatatttttctta
ataTCGTATTTTCCTATTGGAAAGCCTTTCAATAATCAACAAGGATGAAC
TTACAAATGAGTCTAACAGTTTTCTATCACATACATCTATTTACTTATGT
TTTTGGAATAAATTACATCGTGTTTTACGATCaacattttacagaccaga
taaaTCTGATCAATTTTAAATCGATATCAATCGATCAAAACGATGCATGG
GATCTAATTCGATTTAATGGAAACGATACTTTACACAACATATCCACAAT
AAATCACCGAATCACAGATGAtaatgttgtttttgtttttaccaATTACA
TACCGTTTGTATCTGAATATTACCATGGAAGCAGTGACCTCATTTTGAAG
TTTGGAACCTCACTCCAAATTATGGAGAAATCAGCGACGAAACATACAAA
CAACATGTGTCTAATGTTCACACAATCCATGCGTCGATCTTTAACATATC
TCATGTACAGTTTACTCAAACCTCAAGTCGCCATTATTATGGATTCTAGC
GCATGCGCAATGAACTTTTTCGACGATCTTGAACAATCAGTCAAACCAAG
TCAATATAGTAAATGGTTCAAGGTGAATTTAAAACGTGTTATTTTCTCTC
AAGATGAAAATCACGAGATATTAAGAAGTGAATTTTATAATATCAAATCA
GGTGGATTTCAACTCGTTATTTTATTGGTTGCTGGACATTTGCAAAGTCA
CGTGTTTAGTGACgcaaatcatttcaatttacTTGGGTCCATGCCCCTAT
GGGTGATCCCTAATTTTAAGACGTCTGGAGATGagatttgttttgaattt
caacCAGCTAGGATTTTGTCTTTTGATTTGGAACGAAGATATGAAAATCA
ACCGTATTCAAAAATCGAAGATATTGTAAAATCGTCTGTCGGTTTGATTC
GAGACAAAATGACTAGCTCTTTATTGTTACAAtcagaagaaggagaagaa
gaacTCATCACCGACATCTATCGCAAAGCACAAGAAGTAGAAGAATTGGA
GCACCAACAGAGAATGCTGTTAAATTTACGGTACCGAAATATCGCTATTT
CATCAACCAATTGGATTGAAGAAAAAGCTGTCatagaaaattatcatttt
catttggtgaaaaataatttgaatttcttaCAACCCCTCGTTCcTTTGGG
GAATGACATCAGTCGAATTAAATGCGTGACAGTTGTTGACGAACCATTCA
CCATCATTGATGATTCTTTATACGATTCCTATCAAAACAAATGTACGTCT
GGGATGAAATGTGTCCAAATAATAAACCAAAACGGTGCCGCTGTCCGAAA
AATAAGTTGCTGTGTAGGATTTATTATTGATTTATTCAGTTTGGTTTTAA
AAGAAGTTGAAGTAAAACCTGACTTGTATATTGTAGAAGATGGAAAATAT
GGTGTGATGAATAATAAAGGAGTCTGGGATGGAATGATTGGTGACGTCAT
TTCGGGGAAAGCTGATCTAGCTGTTGCTGGTATAACCATTACTGAGTCAC
GTGAGAAGCACGTGAATTTTACGCTACCATTTTTAGAAGCAGAAATGGGG
ATTATTGTCAAACCGATCAAAAGAGTATtagattttgttaattttgaatt
tatttcacCCCTGTCTGGAGAGCTCCAATTGGTTCTTTGGTTTGTTGTAG
TTGGAATAATGGTTTTGAATTATACTTTTGAGAATAATTTATATGTATAT
AGCTTAACAACTGAGAACCGTCCTAAATATGCATACTATTCGACTTTTGA
AAGTATGACATATATCAGTGGCGTATTTCTTCAACGTGATTTGGGTGGTG
TCAATCCGAAACGCCCTGGCACCCGACTCTCAGCTTTGGTATTTGCATTT
GGTATGGTGATTGTCGTGACGACATACACAGCCGTTTTGGCTGCACAGAG
TGTACAAGATCAAGAAGAGAACCCCTTTGAAGGGTCCAAAGATATTAGGA
TGCGAAACCCATCTTCAGATTTTCGTTACGGTTTGTTGAAGAGTAGTAAT
TACGAGACATATTTTCGAAACAGTGAAATCGAAACACTGCGCTGGATGGG
AAAATTCATGGAAAAATATAACGTGGAATCGACAAGAGAAGGGGTAGAGA
AAGTCAAAAACGGatcaTTGGAAGCATTCATCGACGACTATAAGTTTTTG
TATTGGTATGTTTCAAACGATCAAAGTTGTGAATTGCGTGTTGTACAAGA
TGCTCTCATGAAAGGTGGCTATGGATTCGCTATGAACAAAGATTTTATTC
ATGCTGCTAATGTAAACCAGGCCATAATCAAATACACCGGTTCACACGAG
CTCAATGTTCTTTTCAATAAATGGTTTAGAAATGCTTGCAGCTCAGCTCA
AAGTACTCCCGTCATGGTTCGACTAGGAATTAACCATTTTGGAGGACTTT
TTCTGCTATTATGCACCACTATTGCGGCATGTTTTCCCTTACTTTTACCT
GAACATTGGTACGCCAAATATTTCAAAGACAAagtgagtcaacaaatcaa
aggAATTTTCGTTAAGGAAAAGACACAAAGTGATCTACAAAAAGCAAACG
TTAAATTAAGAGCCACCTTGAGTTGTGGGCTTCCTGCTGATAAAAGAGAA
AGATCTTTTTCTGTTATTGATGCTATAAGGAAAAGGGCGGAAGCATTAGC
TAAATTTGAGTGATAATGACTTCAGAATGTAAAAATTGTGATCCGTTGGA
AAGAAAACTTGAGTATTGGTTCTATCTGCTCGAAATACATTGTGGAAACC
AGGCCTATGTGCCCTGTTGCCCGACAATGTGACACTGAACCAAAATCTAA
ATGTAATTCCAACAAAAATTCTACTACCTATGGAATTggaaaagttgata
aaatgtgtAACAATTCTTACAAAGTTACAAAAGGTGTGGCAAAATCACTT
TGGGACAttatttctctttaaaaatggTGAACAAGACGAACTGAGGCTCA
AAAATATGATTTTACAGTAAACTCTCTCTAGTTCGAACCTCTGTTATTCG
tattttctttaattcgaactaaaatattgatcCCCTCAGGtgaaaagttg
tataaaatacTCTTTGTAAATCGAatatcg

Run BLAST on NCBI

protein sequence of TCONS_00008580-protein

>TCONS_00008580-protein ID=TCONS_00008580-protein|Name=TCONS_00008580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=872bp
MNLQMSLTVFYHIHLFTYVFGINYIVFYDQHFTDQINLINFKSISIDQND
AWDLIRFNGNDTLHNISTINHRITDDNVVFVFTNYIPFVSEYYHGSSDLI
LKFGTSLQIMEKSATKHTNNMCLMFTQSMRRSLTYLMYSLLKPQVAIIMD
SSACAMNFFDDLEQSVKPSQYSKWFKVNLKRVIFSQDENHEILRSEFYNI
KSGGFQLVILLVAGHLQSHVFSDANHFNLLGSMPLWVIPNFKTSGDEICF
EFQPARILSFDLERRYENQPYSKIEDIVKSSVGLIRDKMTSSLLLQSEEG
EEELITDIYRKAQEVEELEHQQRMLLNLRYRNIAISSTNWIEEKAVIENY
HFHLVKNNLNFLQPLVPLGNDISRIKCVTVVDEPFTIIDDSLYDSYQNKC
TSGMKCVQIINQNGAAVRKISCCVGFIIDLFSLVLKEVEVKPDLYIVEDG
KYGVMNNKGVWDGMIGDVISGKADLAVAGITITESREKHVNFTLPFLEAE
MGIIVKPIKRVLDFVNFEFISPLSGELQLVLWFVVVGIMVLNYTFENNLY
VYSLTTENRPKYAYYSTFESMTYISGVFLQRDLGGVNPKRPGTRLSALVF
AFGMVIVVTTYTAVLAAQSVQDQEENPFEGSKDIRMRNPSSDFRYGLLKS
SNYETYFRNSEIETLRWMGKFMEKYNVESTREGVEKVKNGSLEAFIDDYK
FLYWYVSNDQSCELRVVQDALMKGGYGFAMNKDFIHAANVNQAIIKYTGS
HELNVLFNKWFRNACSSAQSTPVMVRLGINHFGGLFLLLCTTIAACFPLL
LPEHWYAKYFKDKVSQQIKGIFVKEKTQSDLQKANVKLRATLSCGLPADK
RERSFSVIDAIRKRAEALAKFE

Run BLAST on NCBI

transcript from alignment at sc0000086:810525..816494+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008580 ID=TCONS_00008580|Name=TCONS_00008580|organism=Clytia hemisphaerica|type=transcript|length=5970bp|location=Sequence derived from alignment at sc0000086:810525..816494+ (Clytia hemisphaerica)
CAATGAAAAGTCAATGATTCTCAACCAGTCAATGTGATcgagaaaaaaac
agaaaaaatgatatttttctaaaataaatgaaaatttgatatttttctta
ataTCGTATTTTCCTATTGGAAAGCCTTTCAATAATCAACAAGGATGAAC
TTACAAATGAGTCTAACAGTTTTCTATCACATACATCTATTTACTTATGT
TTTTGGAATAAATTACATCGTGTTTTACGATCaacattttacagaccaga
taaaTCTGATCAATTTTAAATCGATATCAATCGATCAAAACGATGCATGG
GATCTAATTCGATTTAATGGAAACGATACTTTACACAACATATCCACAAT
AAATCACCGAATCACAGATGAtaatgttgtttttgtttttaccaATTACA
TACCGTTTGTATCTGAATATTACCATGGAAGCAGTGACCTCATTTTGAAG
TTTGGAACCTCACTCCAAATTATGGTAtgatctttttattttaatccACT
TGCATactaaacaatgaaaatactgGAATTGCCTCCGTCGgagggggttt
gtaggggttcgaaataccgttttcccgtcaaaatttttgctgaatcccgg
aatcccgaaaattgaaaaaataataacaccgtcacaccagcttgtacagg
gcaaaaatgtgcctaaataccgtcaccgtctgattttaaaattccgtttt
cccgtctcttttttcgtcaaatcccgtaataccgtactaaaaaaggacCA
ATCCAGTCACACCGTAAAcgtacaacccccccccctccgtcATATGGCAG
TCATACAACGATGACTGGGTCAATTATTCGAAAGAATTCATGTTTTAGGG
TCAATTTGTTTGTCTGTTCCAAATGATAGATTTGTGCACTGCCGTGttcc
ataaaaaatatttaattctATAAGAGTTTtaaacacacccctgtctcgat
TTTCTCATGTTAGGTGGCAATGagaaaatggtatttttgttagtctagca
agctagagggctaattcagacatagtagaaataaagcaaaaggtAATCGA
GGGAAcatttttagtttatacaaattaaattccgtaacaataatcgtatt
atcatacaatgcctatactactgtattacacgcattataaacgactccag
tctatattTTAGTTTGTCTTTTTAGGAGAAATCAGCGACGAAACATACAA
ACAACATGTGTCTAATGTTCACACAATCCATGCGTCGATCTTTAACATAT
CTCATGTACAGTTTACTCAAACCTCAAGTCGCCATTATTATGGATTCTAG
CGCATGCGCAATGAACTTTTTCGACGATCTTGAACAATCAGTCAAACCAA
GTCAATATAGTAAATGGTTCAAGGTGAATTTAAAACGTGTTATTTTCTCT
CAAGATGAAAATCACGAGATATTAAGAAGTGAATTTTATAATATCAAATC
AGGTGGATTTCAACTCGTTATTTTATTGGTTGCTGGACATTTGCAAAGTC
ACGTGTTTAGTGACgcaaatcatttcaatttacTTGGGTCCATGCCCCTA
TGGGTGATCCCTAATTTTAAGACGTCTGGAGATGagatttgttttgaatt
tcaacCAGCTAGGATTTTGTCTTTTGATTTGGAACGAAGATATGAAAATC
AACCGTATTCAAAAATCGAAGATATTGTAAAATCGTCTGTCGGTTTGATT
CGAGACAAAATGACTAGGTAAGAGCTCGAGATTAACAATAAAAGAACATC
GTTATTAACTAGGTGGGGAATTCTTTGATGGCAGGTTTTAAATTCAAAGA
GTGATTTTCAGCTGTGTGACTGACTATATGCGAAATTTTAAAACTTGTAT
ACTTATAATATTTCAATCTccaaaacctattcaatcaagatgattgaata
attATTGATTGGACAGAGAATTTCAATTATTCTAAGCCCAGTTTCAATAA
AAATCTTTACATAAAAATTTGTctgctttttttgggacacactgtattca
tattatgcaccattgcaatccaacagctgattggttgaaagtgatgcatt
gattgattttacgtcacttacaaccaatcagctattgggatcgtgatgta
atgtcagaagatattgcaatggtacatatcatgcatacatgttctttttt
tcctCCAGCTCTTTATTGTTACAAtcagaagaaggagaagaagaacTCAT
CACCGACATCTATCGCAAAGCACAAGAAGTAGAAGAATTGGAGCACCAAC
AGAGAATGCTGTTAAATTTACGGTACCGAAATATCGCTATTTCATCAACC
AATTGGATTGAAGAAAAAGCTGTCatagaaaattatcattttcatttggt
gaaaaataatttgaatttcttaCAACCCCTCGTTCGTAAGTGAATTGTTT
GGACTCAGATGTAAAcaatcctatcgtctacaccattgacttccaagccc
gaagacCTAGACTCAAGACTCCTTGGataggaaatgaagccacttgaTCC
CATCCAAAACACCTgtgcgtggtttttacacaaacgccggattgaaagta
aagtctatcgctagatttcaaaaaatgtagccctcaaaaacaaaggagcc
ACTAGATATAATCCGTTTTCATGAATGCTGCGCGTTCTAGGTGCgatctg
gatgggaaataagtggcttcactttttcttgcttgagaaaggttagatTC
TactctttaaactcaatggtccaCACAAGATCACTAGAAAGGGGATAGTT
TAAgaggcgggataaatttgaaaacagaggCTAGCTCAGGGCGGAGTACG
CAGTGgtggaggtgtttacagtgtaACGTTTGCTCCAATCTCTACCTCCG
CTGTTTGTTTCCGCAAACCACCGTGGTGGCTGTAGACTCTGCGCATATAt
gtcaaagttgacatttttaaattttccaatattcttttttgacttttttg
gcTATATGATTGTGCTTTAAATGCGTCCAAATACTGATGACGCATAATTC
AATTCTGGTTTAGCAAGATATTATAGCCGGGTGTCTCATATTTAAGATTG
ACAGAGTGGTTATGTAGTTAAAATACTGACTTAAAATCctgcaataaata
tttttgttaatttttttcaataatattaACTTAAAATTACGACTTGGCAA
AAAATTGAAGTTaaatttcgtttttcatttgtttcagcTTTGGGGAATGA
CATCAGTCGAATTAAATGCGTGACAGTTGTTGACGAACCATTCACCATCA
TTGATGATTCTTTATACGATTCCTATCAAAACAAATGTACGTCTGGGATG
AAATGTGTCCAAATAATAAACCAAAACGGTGCCGCTGTCCGAAAAATAAG
TTGCTGTGTAGGATTTATTATTGATTTATTCAGTTTGGTTTTAAAAGAAG
TTGAAGTAAAACCTGACTTGTATATTGTAGAAGATGGAAAATATGGTGTG
ATGAATAATAAAGGAGTCTGGGATGGAATGATTGGTGACGTCATTTCGGG
GAAAGCTGATCTAGCTGTTGCTGGTATAACCATTACTGAGTCACGTGAGA
AGCACGTGAATTTTACGCTACCATTTTTAGAAGCAGAAATGGGGATTATT
GTCAAACCGATCAAAAGAGTATtagattttgttaattttgaatttatttc
acCCCTGTCTGGAGAGCTCCAATTGGTTCTTTGGTTTGTTGTAGTTGGAA
TAATGGTTTTGAATTATACTTTTGAGAATAATTTATATGTATATAGCTTA
ACAACTGAGAACCGTCCTAAATATGCATACTATTCGACTTTTGAAAGTAT
GACATATATCAGTGGCGTATTTCTTCAACGTGATTTGGGTGGTGTCAATC
CGAAACGCCCTGGCACCCGACTCTCAGCTTTGGTATTTGCATTTGGTATG
GTGATTGTCGTGACGACATACACAGCCGTTTTGGCTGCACAGAGTGTACA
AGATCAAGAAGAGAACCCCTTTGAAGGGTCCAAAGATATTAGGGTCAGTT
TCTCTCACACATCCCTGTTTCGATTATTTAATAAGAGCCAGAACATCCCT
GTCTTCCACTTTCAGATAATCTTGTATTTTCCTAAAAGCCGCATGTTCCC
TGGGGCGCTGGGGGACTGGGTAATATTGAGGATGCTCTCAAATTAGTTAT
CAAAAAAGGCTATTTTTGTCTTTATTATATGGCTTAGCTATTCAAAACAC
TCGATTGCTGCTATTGTGAAATTGATTGGTCAAAAAATTATCAGAATCAC
GCTATCAGAAAATTTCATAACCGAGTTTAAGAAGCAGAGAGCGAATTTGT
AATCTCCTTGCCGTTTGAATTTAAGAACCAGCTTTCTTTACTGGAagata
tataaaaaagaaacagaCCATCCAATCTTGAAAGACTCAAATCTAAGTCT
TATAATTTCTAAATCAACGATTGTTTTTAGATGCGAAACCCATCTTCAGA
TTTTCGTTACGGTTTGTTGAAGAGTAGTAATTACGAGACATATTTTCGAA
ACAGTGAAATCGAAACACTGCGCTGGATGGGAAAATTCATGGAAAAATAT
AACGTGGAATCGACAAGAGAAGGGGTAGAGAAAGTCAAAAACGGGTAAGT
GttgggtggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGG
GGGGCTAGGCTgattggggggggggcagtaGGCTGGCCTTGGTCTCAGTG
AGATGATATGAATATGTTAGAACAGTTAGACACATAGAATGAAGGAGCTA
TtatgatttcattttcatttaaacACTTTGTGTTAATTTGTATCTTTGGT
TGAAACTATTGATTACAAATAAAtgggttgaaaattttcattttcagatc
aTTGGAAGCATTCATCGACGACTATAAGTTTTTGTATTGGTATGTTTCAA
ACGATCAAAGTTGTGAATTGCGTGTTGTACAAGATGCTCTCATGAAAGGT
GGCTATGGATTCGCTATGAACAAAGATTTTATTCATGCTGCTAATGTAAA
CCAGGCCATAATCAAATACACCGGTTCACACGAGCTCAATGTTCTTTTCA
ATAAATGGTTTAGAAATGCTTGCAGCTCAGCTCAAAGTACTCCCGTCATG
GTTCGACTAGGAATTAACCATTTTGGAGGACTTTTTCTGCTATTATGCAC
CACTATTGCGGCATGTTTTCCCTTACTTTTACCTGAACATTGGTACGCCA
AATATTTCAAAGACAAagtgagtcaacaaatcaaaggAATTTTCGTTAAG
GAAAAGACACAAAGTGATCTACAAAAAGCAAACGTTAAATTAAGAGCCAC
CTTGAGTTGTGGGCTTCCTGCTGATAAAAGAGAAAGATCTTTTTCTGTTA
TTGATGCTATAAGGAAAAGGGCGGAAGCATTAGCTAAATTTGAGTGATAA
TGACTTCAGAATGTAAAAATTGTGATCCGTTGGAAAGAAAACTTGAGTAT
TGGTTCTATCTGCTCGAAATACATTGTGGAAACCAGGCCTATGTGCCCTG
TTGCCCGACAATGTGACACTGAACCAAAATCTAAATGTAATTCCAACAAA
AATTCTACTACCTATGGAATTggaaaagttgataaaatgtgtAACAATTC
TTACAAAGTTACAAAAGGTGTGGCAAAATCATTTTGGGATAttatttctc
tttaaaaattgtgAACAAGGNAGAATTTACAAAAACACTTTGGGACAtta
tttctctttaaaaatggTGAACAAGACGAACTGAGGCTCAAAAATATGAT
TTTACAGTAAACTCTCTCTAGTTCGAACCTCTGTTATTCGtattttcttt
aattcgaactaaaatattgatcCCCTCAGGtgaaaagttgtataaaatac
TCTTTGTAAATCGAatatcg

Coding sequence (CDS) from alignment at sc0000086:810525..816494+

>TCONS_00008580 ID=TCONS_00008580|Name=TCONS_00008580|organism=Clytia hemisphaerica|type=CDS|length=2619bp|location=Sequence derived from alignment at sc0000086:810525..816494+ (Clytia hemisphaerica)
ATGAACTTACAAATGAGTCTAACAGTTTTCTATCACATACATCTATTTAC
TTATGTTTTTGGAATAAATTACATCGTGTTTTACGATCaacattttacag
accagataaaTCTGATCAATTTTAAATCGATATCAATCGATCAAAACGAT
GCATGGGATCTAATTCGATTTAATGGAAACGATACTTTACACAACATATC
CACAATAAATCACCGAATCACAGATGAtaatgttgtttttgtttttacca
ATTACATACCGTTTGTATCTGAATATTACCATGGAAGCAGTGACCTCATT
TTGAAGTTTGGAACCTCACTCCAAATTATGGAGAAATCAGCGACGAAACA
TACAAACAACATGTGTCTAATGTTCACACAATCCATGCGTCGATCTTTAA
CATATCTCATGTACAGTTTACTCAAACCTCAAGTCGCCATTATTATGGAT
TCTAGCGCATGCGCAATGAACTTTTTCGACGATCTTGAACAATCAGTCAA
ACCAAGTCAATATAGTAAATGGTTCAAGGTGAATTTAAAACGTGTTATTT
TCTCTCAAGATGAAAATCACGAGATATTAAGAAGTGAATTTTATAATATC
AAATCAGGTGGATTTCAACTCGTTATTTTATTGGTTGCTGGACATTTGCA
AAGTCACGTGTTTAGTGACgcaaatcatttcaatttacTTGGGTCCATGC
CCCTATGGGTGATCCCTAATTTTAAGACGTCTGGAGATGagatttgtttt
gaatttcaacCAGCTAGGATTTTGTCTTTTGATTTGGAACGAAGATATGA
AAATCAACCGTATTCAAAAATCGAAGATATTGTAAAATCGTCTGTCGGTT
TGATTCGAGACAAAATGACTAGCTCTTTATTGTTACAAtcagaagaagga
gaagaagaacTCATCACCGACATCTATCGCAAAGCACAAGAAGTAGAAGA
ATTGGAGCACCAACAGAGAATGCTGTTAAATTTACGGTACCGAAATATCG
CTATTTCATCAACCAATTGGATTGAAGAAAAAGCTGTCatagaaaattat
cattttcatttggtgaaaaataatttgaatttcttaCAACCCCTCGTTCc
TTTGGGGAATGACATCAGTCGAATTAAATGCGTGACAGTTGTTGACGAAC
CATTCACCATCATTGATGATTCTTTATACGATTCCTATCAAAACAAATGT
ACGTCTGGGATGAAATGTGTCCAAATAATAAACCAAAACGGTGCCGCTGT
CCGAAAAATAAGTTGCTGTGTAGGATTTATTATTGATTTATTCAGTTTGG
TTTTAAAAGAAGTTGAAGTAAAACCTGACTTGTATATTGTAGAAGATGGA
AAATATGGTGTGATGAATAATAAAGGAGTCTGGGATGGAATGATTGGTGA
CGTCATTTCGGGGAAAGCTGATCTAGCTGTTGCTGGTATAACCATTACTG
AGTCACGTGAGAAGCACGTGAATTTTACGCTACCATTTTTAGAAGCAGAA
ATGGGGATTATTGTCAAACCGATCAAAAGAGTATtagattttgttaattt
tgaatttatttcacCCCTGTCTGGAGAGCTCCAATTGGTTCTTTGGTTTG
TTGTAGTTGGAATAATGGTTTTGAATTATACTTTTGAGAATAATTTATAT
GTATATAGCTTAACAACTGAGAACCGTCCTAAATATGCATACTATTCGAC
TTTTGAAAGTATGACATATATCAGTGGCGTATTTCTTCAACGTGATTTGG
GTGGTGTCAATCCGAAACGCCCTGGCACCCGACTCTCAGCTTTGGTATTT
GCATTTGGTATGGTGATTGTCGTGACGACATACACAGCCGTTTTGGCTGC
ACAGAGTGTACAAGATCAAGAAGAGAACCCCTTTGAAGGGTCCAAAGATA
TTAGGATGCGAAACCCATCTTCAGATTTTCGTTACGGTTTGTTGAAGAGT
AGTAATTACGAGACATATTTTCGAAACAGTGAAATCGAAACACTGCGCTG
GATGGGAAAATTCATGGAAAAATATAACGTGGAATCGACAAGAGAAGGGG
TAGAGAAAGTCAAAAACGGatcaTTGGAAGCATTCATCGACGACTATAAG
TTTTTGTATTGGTATGTTTCAAACGATCAAAGTTGTGAATTGCGTGTTGT
ACAAGATGCTCTCATGAAAGGTGGCTATGGATTCGCTATGAACAAAGATT
TTATTCATGCTGCTAATGTAAACCAGGCCATAATCAAATACACCGGTTCA
CACGAGCTCAATGTTCTTTTCAATAAATGGTTTAGAAATGCTTGCAGCTC
AGCTCAAAGTACTCCCGTCATGGTTCGACTAGGAATTAACCATTTTGGAG
GACTTTTTCTGCTATTATGCACCACTATTGCGGCATGTTTTCCCTTACTT
TTACCTGAACATTGGTACGCCAAATATTTCAAAGACAAagtgagtcaaca
aatcaaaggAATTTTCGTTAAGGAAAAGACACAAAGTGATCTACAAAAAG
CAAACGTTAAATTAAGAGCCACCTTGAGTTGTGGGCTTCCTGCTGATAAA
AGAGAAAGATCTTTTTCTGTTATTGATGCTATAAGGAAAAGGGCGGAAGC
ATTAGCTAAATTTGAGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004799	XLOC_004799	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00008580-protein	TCONS_00008580-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000086	supercontig	sc0000086:810525..816494 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0477654	0.0432119	0.0254406	0.0244667	0.0295697	0.035442	2.91697	2.77395	2.37481	3.14101	1.46201	2.20295	2.25548	1.4021	0.122052	0.123704	1.18329	1.92951	6.01692	6.35883	3.64029	3.91954	0.821503	1.24478	1.11542	0.743752	0.0770146	0.0650686	0.0371748	0.0123131

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR019594	Glu/Gly-bd
IPR001638	Solute-binding_3/MltF_N
IPR001320	Iontro_rcpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005234	extracellular-glutamate-gated ion channel activity
GO:0004970	ionotropic glutamate receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005234	extracellular-glutamate-gated ion channel activity
molecular_function	GO:0004970	ionotropic glutamate receptor activity

Blast

[Close]

BLAST of TCONS_00008580 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 3.567e-51
Identity = 142/495 (28.69%), Postives = 235/495 (47.47%), Query Frame = 1

Query: 1267 IKCVTVVDEPFTI---IDDSLYDSYQNKCTSGMKCVQIINQNGAAVRKI----------------SCCVGFIIDLFSLVLKEVEVKPDLYIVEDGKYGVMNNKGVWDGMIGDVISGKADLAVAGITITESREKHVNFTLPFLEAEMGIIVKPIKRVLDFVNFEFISPLSGELQLVLWFVVVGIMVLNYTFENNLYVYSLTTENRPKYAYYSTFESMTYISGVFLQRDLGGVNPKRPGTRLSALVFAFGMVIVVTTYTAVLAAQSVQDQEENPFEGSKDIRMRNPSSDFRYGLLKSSNYETYFRNSEIETLRWMGKFMEKYNVESTREGVEKVKNGS--LEAFIDDYKFLYWYVSNDQSCELRVVQDALMKGGYGFAMNKDFIHAANVNQAIIKYTGSHELNVLFNKWFRNACSSAQSTPV--MVRLGINHFGGLFLLLC--------TTIAA--CFPLLLP--------EHWYAKYFKDKVSQQIKGIFVKEKTQ 2628
            ++ VT+++ PF     +DD      +  C +G  C+  +  + + +  +                 CC G+ IDL   + +++    DLYIV DGKYG   N G W G++GD++ G A +AV   +I  +R + ++FT PF    +GI+V+   R        F+ PL   + L + FV + I  +  T       + LT + R +   +S   ++     +   R +    PK    R    ++A   +  ++TYTA LAA  V ++      G  D ++ +PS  FR+G ++ S+ E Y R S  E    M ++M +YNV +T +GVE +KN    L+AFI D   L + VS D  C+L  V       GYG  +  +    AN+++ I +Y     +++L +KW+R      +S  V   +++GI HF GLF+LLC        TTI     + LLLP        ++W   +   ++ + I   F++EK Q
Sbjct:  515 LRVVTLIEHPFVFTREVDD------EGLCPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKN-GHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVR--TRDTAAPIGAFMWPLHWTMWLGI-FVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPE----MHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRVVPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIKNKSKLQYWL--HTSQRLHRAINTSFIEEKQQ 993

The following BLAST results are available for this feature:

BLAST of TCONS_00008580 vs. Swiss-Prot (Human)

BLAST of TCONS_00008580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NMD3A	3.567e-51	28.69	Glutamate receptor ionotropic, NMDA 3A OS=Homo sap...	[more]

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TCONS_00008580 (transcript) - C. hemisphaerica