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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008606 ID=TCONS_00008606|Name=TCONS_00008606|organism=Clytia hemisphaerica|type=transcript|length=1056bp
ttcgagagttctagcaatagtttatcgttcaacttggagagggaatgttt
gtaaacatagaattttttttcataacagttatttggggggtcggaattaa
gctgggctgtcggcgggctttaggacctctcacggtatgtggtgtgtttg
gggcattaaggctcttagcTTAAGACCATGTCtcctatagcggctttatt
tattagagggatttttagagtgtctcatatttgctagcaacttgcgaatt
gaggtggagtctggatcgcttcgcaacccttatacaatacggctagtacC
CTGAAATCAAACGTTGGCAAAGCAGTTTAATCCGGCTACAGATTAAGTTT
ATTTACACCCTTCAAAAGTGTATACAGTGTACCCTCATAAATCGCCATAG
CCTTCATACTCGTAGATATCAAGACATCTTGTGATGTTGTGACCATATAC
CAAACTTCCACTTATTCGCTATTTTGGTTATTTGCTCGTGTCGTTCGCTA
CTATGTCTACCATTTTTTGGCGCGAAACTTCTAAATGACATTGCTCCATT
TTCAATTCCGCCCCTTCCACCCTCCTCTCTATAACCGCTTTATTGGGCGG
GAAGACAATAAACGCCACCATCATCACTTTGCCGCCCACTTTATTCAATA
TTGCAGCCAAGTAGCGGCTCGACCTTCCTTTCGATATTCTGTTGATTTTG
CCAGTGGCCAACAGCAATCATGagtTCACACAAGACTTTCATCATCAAGC
GAAAGTTGGCTAAGAAGATGAAACAAAACAGACCTGTACCTCAGTGGATC
AGAATGAGAACTGGTAATAAAATCAAGTACAACGCCAAGAGACGTCACTG
GAGAAGAACCAAGTTGGGATTGTAAATCTTCCTGTCCCTCCACCACAGTG
TACAAACATCAATGTGTGAcgaaataaaaacaatgatttcGTTATTGAAA
TCTGCCAAAAACTCCCATTTGTTTCTTATCTCGAAAACTCTCTTCGGact
tcattttcttcaatttttttttttttggcacaaataaaccttttcataaa
ttacgc Run BLAST on NCBI transcript from alignment at sc0000086:369308..376611- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008606 ID=TCONS_00008606|Name=TCONS_00008606|organism=Clytia hemisphaerica|type=transcript|length=7304bp|location=Sequence derived from alignment at sc0000086:369308..376611- (Clytia hemisphaerica)
TTCGAGAGTTCTAGCAATAGTTTATCGTTCAACTTGGAGAGGGAATGTTT
GTAAACATAGAATTTTTTTTCATAACAGTTATTTGGGGGGTCGGAATTAA
GCTGGGCTGTCGGCGGGCTTTAGGACCTCTCACGGTATGTGGTGTGTTTG
GGGCATTAAGGCTCTTAGCTTAAGACCATGTCTCCTATAGCGGCTTTATT
TATTAGAGGGATTTTTAGAGTGTCTCATATTTGCTAGCAACTTGCGAATT
GAGGTGGAGTCTGGATCGCTTCGCAACCCTTATACAATACGGCTAGTACC
CTGAAATCAAACGTTGGCAAAGCAGTTTAATCCGGCTACAGATTAAGTTT
ATTTACACCCTTCAAAAGTGTATACAGTGTACCCTCATAAATCGCCATAG
CCTTCATACTCGTAGATATCAAGACATCTTGTGATGTTGTGACCATATAC
CAAACTTCCACTTATTCGCTATTTTGGTTATTTGCTCGTGTCGTTCGCTA
CTATGTCTACCATTTTTTGGCGCGAAACTTCTAAATGACATTGCTCCATT
TTCAATTCCGCCCCTTCCACCCTCCTCTCTATAACCGCTTTATTGGGCGG
GAAGACAATAAACGCCACCATCATCACTTTGCCGCCCACTTTATTCAATA
TTGCAGCCAAGTAGCGGCTCGACCTTCCTTTCGATATTCTGTTGATTTTG
CCAGTGGCCAACAGCAATCATGGTAAGTATTTTACTGCTAAACTCTAAAA
ATTCGTTTATTCACTCTGAAATACTGTTTATTTACGAAAGATTAATGGTT
TTACTGTAATATTTACGAACTATCAGGTAACCACGATCGATTATTCCAGA
GATATTGACGGATTGATGATGTAGGGTAGTTTAGTTTATGTCAATCACAG
AAGTTGTCATCCGCTGGAAATCTTCTAACTAAATCTTAAAGAATTTTTTC
ATTGACATTTTCTTAACCTGATAACAGCTGTTCATAATTTTTTTGTACAG
TAAACCTCTGAAGGGGCTTGAAAATTAAACATTAGAGGAAAAAGTCCTCT
CGTGCAAATAATCTTAATTTTTTTGTTTTTCCGGTCCACTGACCAGGTGA
AAATTTCCTTTGTCGTTAGTCAGGGGCAAAATTCTTTGTCATACACCATT
GTTTGTCTATTGTGTAGACTAGACAAACTAGGCTGACTTAGTTCTTGTGT
ATAGTTTGTCCAGTGGTGAAAAGTGTAATCATTCAACAGCAGACATCTCA
CGTCTGGTGGTTCCTGATCGTGATTTGATGTCTTGAAATTTAGATTTTTT
AAGGGTTTATTTATGATCTATTCCAGACCCCCGCGCTCGATAGGATCGAT
CATCGGAACGGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATCGTTAATCGATTCGTCATCGATCGTTAATCGATTCGTCATCGAT
CGTTAATCGATTCGTCATCGATTATAAATCGATTATGCATCGATGACGAA
TCGATTATGCATCGATGACGAATCGATTAACGATCGATGACAAATCGATA
GAGTCGATAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATCTC
CTATCCGGATCGATAAGTAATCCATCAATCACATATCGATCCGTCATCGA
GCCGTTCCGATGATCGATCCTATCGAGCGCGGGGGTCTGGTCTATTTTGG
AATGCATGGATAGATCCAATTTATTGCTTAGTATAGTTTGTATCACCTTA
GCAACCCTAAGGAAAAAAAAAATTGTTATTAATTTCGCCTAGGCCAAACA
AAAGAAGTCTTGTTCCCGGAAATCGGTCAGGTGAACCTATTTTTGAAAGT
CACCCGGCCGCAAAAATAATTAGTGGCCAAAATGTGGCGGAGCCCGATTT
TCGAAAAAAAAATTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACA
GGTTTCTTGGACTTTGTGAAATATTGGATCATTGTTTTTTTCTGATTTTT
TGCATGAAAGTAGGTAAAAGATGGCTCAAGCAGATTTTTGTAAAAAAAGA
ATTTTTCAGCTTAAAAAACCCATCTTTATCTATAAGAATCACTATTAAAA
AGAAAACATCAATGTTCTTATCCGAATTACTGAATTTATTGATGAGATAG
ATGTTTTTTTTGCTCACGAAGTCTTAATTATGAAAGAATATTTCAAGAGA
ATGAAATTTTGGTTCCTGAACGTTTTTTTTATAAGAAACAAACGACTAAT
TTAATAGATCGTCACTATTTGTGTTCTTTGTTTAATGGTCACGTCACGTA
GATATCAATTATAAATGTGTTAAATGCATAACCAGGTAGGTCCATGAAAG
TATCACTTGTTTTTCTTTTATGCTCTCAGAAATTTTTTTTTTTTCAAACT
CAATATTTCAGACAACAAAAAGCAAAACGTTTTCTCAAGAAAACGAAAGT
TTTATAACAGAGTAAATAATATACAGCCAAGACGAACAGACGTTCTTAAA
TACACGTTTTTTTTTATATAAGGAACCTTAACTTTGCTCTGAGCCTGGAG
TTCCTTATTTTTACAGAAAATTTCAGCCTCAAAGTTCCTTTTGAGTTCCT
TATTTACATAGCTAGTTCAAGTGAAAACTCTTACTTTTACTGTTCCTTAA
AAGTATAAAACTTGTTTTCTTATTCTTAGCCTGAGCAGTTCCTTAACAAT
TCCTTATTTTTTGGACTACTTTCAGCCTCGAGTTCCTTATAAACGTGTTC
CTTATAAAAAAAAAAAACGTGTATTAGTATTGTATAATATTTGTGACCCT
TTCTGAGATATTCTATGGGGCAAAATAATGGCGTGTAGGCATTTCTTTTG
GCGTTCTGTGAACAAGTGATCAATTCAATTTAACCAATCAATGCTAACAA
TCCCACATCCAGGCAGTTTTTTTCTTATAAGCAAGGATTTATTATACACT
GGATATACAACTAACAGATTTTTGCTGATTTCTCGTGCACTAGCTATGTC
CGCAGTAATAAAAGTATTGTTCACTCTCCTTCCCTCATTAAATGATTTTT
TGAAGCATTTTTATTGCATTTCTTATCGAAAATCACTTATCAAATTCCCA
AAAGAGACTTACNTTAAATGTTTTTTCGAAGCATTTTTATTGCATTTCTT
ATCGAAAATCACTTATCAAATTCCCAAAAGAGACTTACAACTTTCCTGTG
AGAGTCGAATTCTTCCACTTAATTGATAATTATAAGTCATTATGACGTTT
CAAGCTGTGAGAAAGATGCAAAAGACGTGTTGTATATAAGAAATTTAATG
TTGACACCGGAAATTTTCAAACTTCAACCTCAAAAAAACCACCTTGCCAC
CACGTGCCTCCATAGGATTTTCATACCACAGTGGAGCCAAGAAACTCGAG
TCTTATGTATGTTAATAGCTCTTCTGGGAACAGCCTTGGGAAGATATTTC
CAATTCAAAATTTTGTGTCACTATAAGCATTTTGGCTGGATTTCTTGTCT
AATGATGTTTTTCACACATTAGATTTCACAACTGTATCTGGCTTGGAATA
CTAGCCTTGCTTTCAAACTTTTTTCTGCAAATGTACAAAAAGAAAGAGCT
AGAGAAATTTTTTAAAATAAGACAGATAAATATTTTAAAAAATCAGACAT
CTTCGAGCCGCCATGACAGTTGTCCTTTGCGGACAAAGCTAGAACATCAA
TTGTTTTCTGAAACAAAGGAAATACAATGATTGCTCTCCATCGTTTTATG
AGTCGTTTATCCAGTGTATAATAAATCTTTGTTATAAGCATATACACGTT
TTTTTTTAAGAAACACGAGGCTCAGAATGGGCTTTTCCAGAAAAAATTCG
TTCATGGGGGGTGGAGGATATATTATTTTTTCTGTGATCTACCCCTGGAC
ATGTCGATTTTACACCCCCTGGACATGTGTTTTACCCCTGGACAAGCATC
AAGTTGACCCCCTGGACACAAATATTTACCCCTGGACATCGCAGATTTAC
CCCATGGACATGGCAGTTTTTCAGTATTTTTTCAATACCCCTGGACAATA
TATCCTCCACCCCCCATGAATGTTTTTTTTCTGGAAGAGCCCAATGCCTA
AAAACTAAGAAACATGCTGAGGCTGAGAATGAGAAAATAACATTTTTTGA
TTCGGTTTTTTTAAAAACCTTCCAATCCAGCCTTCTAGTAGGTTAATTAT
GTCAAAAAGTTTAGAAACATGTAAGAAACATTTAAGGCTAAAAAGGCCAA
TTTCTTAAGAAACATTGAGGCTGCTTGGTAGGACTAGTTTCTTAAAAAAA
GAACGTGTACTTCATAAAAATCAAATTAATTACTAACTCTTGATAGACAG
TGACATACCCTTCGGTTAGTAGTTCTTAAGTAAAAGGGATGACGTGCAAT
ATGAGCATATTTATTTTTCTTATAAGCATATACTTCCGGAGAATCAAATC
ATTAACTCTTGATAGGACGGTGATATGACCTTTTGTAATTATTTCTTACA
AATTAAACAATCCTTTTCTTAAATTGGTCTAATTTTTTAGCGATTTTGAG
CCTCGCTGTTCTTTTAAAATTGTTCTTTCAAAAGAAAAGTGTATGGATTG
CAGTTCATTAAAGTGAGATAAAGTAAATATTTATGTGTTCTTTTCATCAA
GGCTCGATGTAAAGTACATTAAAGGAAGAAATTTTGGCGAGTGGCTGAAA
AAGTTTTTTCGTAGGGAATTTAATTTGGTGGATCAGGGAAAAGCTAATTT
TGGCAAGAATTTAATTTGGAAATCAGGGATCCGAAATCAGCGTGAAAACA
TTGATGTCAGGGTAAATTATGAAAAATCAGACATAAAGAGGAAAAACTTT
AATTTGGCAGGAATTTAATTTGGCAGATGGTGGAAAAAATTTAATTTGAC
AGGAACTTAAAATTTGGCAGATTTTGGGCAAATCTGCAAAATTTTCTTCG
CGCAAAAATTTCTTCCTTTAATATAGTTTTCAGATTAGCTTCCATCTCTA
CTTTTTGTTTTTTCCCATTCAGTTTAAATTATGGGCAAAATTTTTGACTT
CAAGTCGTCTTGTTTTATCTTAAAAAACAACAGAATTAAAAGATTTTCAA
TTTTCCAAGGTTCTTATTTTGAGATCGAGCCTTTATCCTGTGGACGACAT
TAGCAAAAATTAGCTGTAGGTGAGATTTAATAAAAGGAAGTGCTGTTGTT
TAAAAGTCAAAAAGTTAGTAGCACTTTTGAATTGATCAAAGATCTGTAGT
TAAGATTGCTACACGTTTTTTTTTTTTTAAGAAACTAGTTTTACCAAGCA
GCCTCATTGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTCTTA
CATGTTTCTAAACTTTTTGCCACAATCGGCCTCATGGAAGGCTGGATTGG
AAGGTTCTTAAAAAATAACGAATTGAAAAATGTTATTTTCTCATTCTGAG
CCTCAGCATGTTTCTTAGATGTTTCTTAGTTTTTAGGCATTATGAGCCTC
ATGTTTCTTAAAAGTGTGTTTCTTAAAAAAAAAACAATGTGTAATTAGAA
ATGTAGAAGATTGCTCAAAAAAATTATCAAGCAAATCTCTCTCTTCACGG
ATCTTAGACTTTATTGTGGATAACTTTTCAAATGATTTTCACCAGCATAA
TTTTGTTTTTATTTTAAGAGTTCACACAAGACTTTCATCATCAAGCGAAA
GTTGGCTAAGAAGATGAAACAAAACAGACCTGTACCTCAGTGGATCAGAA
TGAGAACTGGTAATAAAATCAAGTAAGTCTACTTTTTTCTCACAAAAGGT
TCTTCCAGAGAAAAATTGAAAATGGACGGGTGGAGGCCAGAGCCGTAAAA
AATTTTTCAGCCAGGCTCTAGCAGTCGACGTAGTTTGTCAAAATATTTGC
TTGGAGCCATGAACTTAACATTAAGGGACGAAGTAGAAAAATTAATCTAA
TTAATTTCAGTAATACCCCACCTTGAATTTAAGACAATTCAGCAGAAGAC
CTCATCTTCAGCTGAAGTCATCATTTTACATTAATCCAAACAGAGAAACT
GAAAATATTTCTAATTTCCTTCAGGTACAACGCCAAGAGACGTCACTGGA
GAAGAACCAAGTTGGGATTGTAAATCTTCCTGTCCCTCCACCACAGTGTA
CAAACATCAATGTGTGACGAAATAAAAACAATGATTTCGTTATTGAAATC
TGCCAAAAACTCCCATTTGTTTCTTATCTCGAAAACTCTCTTCGGACTTC
ATTTTCTTCAATTTTTTTTTTTTTGGCACAAATAAACCTTTTCATAAATT
ACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008606-exon-sc0000086-1575043694:375890..376611 | TCONS_00008606-exon-sc0000086-1575043694:375890..376611 | Clytia hemisphaerica | exon |
| TCONS_00008606-exon-sc0000086-1575043694:369840..369943 | TCONS_00008606-exon-sc0000086-1575043694:369840..369943 | Clytia hemisphaerica | exon |
| TCONS_00008606-exon-sc0000086-1575043694:369308..369537 | TCONS_00008606-exon-sc0000086-1575043694:369308..369537 | Clytia hemisphaerica | exon |
| TCONS_00008606-exon-sc0000086-1510915933:375890..376611 | TCONS_00008606-exon-sc0000086-1510915933:375890..376611 | Clytia hemisphaerica | exon |
| TCONS_00008606-exon-sc0000086-1510915933:369840..369943 | TCONS_00008606-exon-sc0000086-1510915933:369840..369943 | Clytia hemisphaerica | exon |
| TCONS_00008606-exon-sc0000086-1510915933:369308..369537 | TCONS_00008606-exon-sc0000086-1510915933:369308..369537 | Clytia hemisphaerica | exon |
| TCONS_00008606-exon-sc0000086-1491911889:375890..376611 | TCONS_00008606-exon-sc0000086-1491911889:375890..376611 | Clytia hemisphaerica | exon |
| TCONS_00008606-exon-sc0000086-1491911889:369840..369943 | TCONS_00008606-exon-sc0000086-1491911889:369840..369943 | Clytia hemisphaerica | exon |
| TCONS_00008606-exon-sc0000086-1491911889:369308..369537 | TCONS_00008606-exon-sc0000086-1491911889:369308..369537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:369308..376611 - |
Blast
BLAST of TCONS_00008606 vs. Swiss-Prot (Human)
Match: RL39 (60S ribosomal protein L39 OS=Homo sapiens GN=RPL39 PE=1 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 6.935e-23 Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 3
Query: 720 MSSHKTFIIKRKLAKKMKQNRPVPQWIRMRTGNKIKYNAKRRHWRRTKLGL 872
MSSHKTF IKR LAKK KQNRP+PQWIRM+TGNKI+YN+KRRHWRRTKLGL
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
The following BLAST results are available for this feature:
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