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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008607 ID=TCONS_00008607|Name=TCONS_00008607|organism=Clytia hemisphaerica|type=transcript|length=1265bp
TACATGTCGGGTATCTTATGTAGATTATATCTCCTATCTTTTGTTATCAt
aatcttataaataaagaggTGGTGATCAATTTTTccatattgaaaatttt
ttccaaagaaGGCAAAAATAATTAGGAAATAAACAAACCAAGCATGAAGG
CTGCTATTGTCATTGTTTCCACCATCTTGGCTCTTAACAATGGTAACCCA
ATCAAAAGAAATGATCTCTTAACCGTAAACGATGGAAAGCTGTTGATCAC
TAACGATGGAGAGCTGTTGACTGCGAACGACAGAAAGTTGTTGACCGTGA
ACGACAGAAAGCTGTTGACCGTGAACGATGGAGAGCTGTTGACCGTGAAC
GACGGAAAGCTGTTGACTGCGAACGACGGAAAGCTGTTGACCGTGAACGA
CGGAAAGCTGTTGACCGTGAACGACGGAAAGCTATTGACTGCGAACGACG
GAAAGCTGTTGACCGTGAACGACGAAAAGCTGTTGACCGCGAACGATGGA
GAGCTGTTGACCGCGAACGATGGAGAGCTGTTGACTGCGAACGACAGAAA
GCTGTTGACCGTGAACGACGGAAAGCTGTTGACTGCGAACGACGGAAAGC
TGTTGACCGTGAACGACGGAAAGCTGTTGACCGCTAACGACGAAAAGCTG
TTGACCGTGAACGACGGAAAGCTGTTGACCGTGAACGACGGAAAGCTGTT
GACTGCGAACGACGGAAAGCTGTTGACCGTAAACGATGGAAAGCTGTTGA
CTGCGAACGACGGAAAGCTGTTGACCGTGAACGACGGAAAGCTGTTGACC
GTGAACGACGAAAAGCTGTTGACTGCGAACGACGGAAAGCTGTTGACCGT
GAACGACGGAAAGCTGTTGACTGCGAACGACGGAAAGCTGTTGACCGCGA
ACGACGGAAAGCTGTTGACCGCTAATGATGATTGTCAAAATGGTAAAGTA
GCATATCAAATACTTATGAACATCGCACGACGGGCATCTCGCAACTTTTT
GTGGTGATGTTTGCTTGGATTATAGGTTTatgttcattttcaatttcatt
ttatccaCTGACTGctccaaataaaatttttcaaactttttttaatttgt
ttgtgTAGGGAGAGCGTAATCTGAAATTCgtaatatctttaaaactaGAA
TCCTTGTCAATTCAAAACTAGAGATGAATCTGACTTACATTTGATGGCTA
ATTTAATGGGAAATTAAGATTGAAAGATTAGAATGAAAGAGAAAGTTATT
TGTATTATTGTAGCA Run BLAST on NCBI protein sequence of TCONS_00008607-protein >TCONS_00008607-protein ID=TCONS_00008607-protein|Name=TCONS_00008607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MKAAIVIVSTILALNNGNPIKRNDLLTVNDGKLLITNDGELLTANDRKLL
TVNDRKLLTVNDGELLTVNDGKLLTANDGKLLTVNDGKLLTVNDGKLLTA
NDGKLLTVNDEKLLTANDGELLTANDGELLTANDRKLLTVNDGKLLTAND
GKLLTVNDGKLLTANDEKLLTVNDGKLLTVNDGKLLTANDGKLLTVNDGK
LLTANDGKLLTVNDGKLLTVNDEKLLTANDGKLLTVNDGKLLTANDGKLL
TANDGKLLTANDDCQNGKVAYQILMNIARRASRNFLW Run BLAST on NCBI transcript from alignment at sc0000086:407501..409382- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008607 ID=TCONS_00008607|Name=TCONS_00008607|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at sc0000086:407501..409382- (Clytia hemisphaerica)
TACATGTCGGGTATCTTATGTAGATTATATCTCCTATCTTTTGTTATCAT
AATCTTATAAATAAAGAGGTGGTGATCAATTTTTCCATATTGAAAATTTT
TTCCAAAGAAGGCAAAAATAATTAGGAAATAAACAAACCAAGGTTGGTAG
CTTATTTAATTCTAAATGTTTTTCAACTTGTGCAGCATTTTTAATTTGGT
CCAAACATGAGCTAAAATCTGCAAATCTAGGGTTGTAACGAAAGGCTTGA
TTCCACTCGCTGACTTGACAATTCTCTTTTAGTAGGGGGTGATCCCTTTG
GACCCGTGACATCTTATATGCAACGCGAACAAACCTAGTCCATTACAAAG
AATGAAGTTTTAGAGTTTTTTACCAGGCTTTTTTTGCTAAGGCCTTGAAA
AATCTTTTATGACGAATTTTCAAAGTCAATAAAACCCAAAACCACTTATA
CCAATCGCAAGCTCTGGAAAAACGATATATAGTAAATAAAGGATATATTT
CATTGAGTTTGAAACTTCGTTAAATCTTAGAGGTTAAGGAGTCTTCCTCT
GACGTCAGTTTTAAGTAATGAAAAATTTGCTTAACCCTTAACAAAAACCC
CTTCTCCCTAAAACTCTTTGAATACTTCATTCATTGAAATGGACCAGGTT
TGATTGCGTCGCGTAAAAGATGTCAGGGGTCCTAAACCCCCTACTATTTT
AAAAGTGACAAATAATTACACTTAAATTGTAACACTTTATATAAGCTTTA
ATTTCTCAGCATGAAGGCTGCTATTGTCATTGTTTCCACCATCTTGGCTC
TTAACAATGGTAACCCAATCAAAAGAAATGATCTCTTAACCGTAAACGAT
GGAAAGCTGTTGATCACTAACGATGGAGAGCTGTTGACTGCGAACGACAG
AAAGTTGTTGACCGTGAACGACAGAAAGCTGTTGACCGTGAACGATGGAG
AGCTGTTGACCGTGAACGACGGAAAGCTGTTGACTGCGAACGACGGAAAG
CTGTTGACCGTGAACGACGGAAAGCTGTTGACCGTGAACGACGGAAAGCT
ATTGACTGCGAACGACGGAAAGCTGTTGACCGTGAACGACGAAAAGCTGT
TGACCGCGAACGATGGAGAGCTGTTGACCGCGAACGATGGAGAGCTGTTG
ACTGCGAACGACAGAAAGCTGTTGACCGTGAACGACGGAAAGCTGTTGAC
TGCGAACGACGGAAAGCTGTTGACCGTGAACGACGGAAAGCTGTTGACCG
CTAACGACGAAAAGCTGTTGACCGTGAACGACGGAAAGCTGTTGACCGTG
AACGACGGAAAGCTGTTGACTGCGAACGACGGAAAGCTGTTGACCGTAAA
CGATGGAAAGCTGTTGACTGCGAACGACGGAAAGCTGTTGACCGTGAACG
ACGGAAAGCTGTTGACCGTGAACGACGAAAAGCTGTTGACTGCGAACGAC
GGAAAGCTGTTGACCGTGAACGACGGAAAGCTGTTGACTGCGAACGACGG
AAAGCTGTTGACCGCGAACGACGGAAAGCTGTTGACCGCTAATGATGATT
GTCAAAATGGTAAAGTAGCATATCAAATACTTATGAACATCGCACGACGG
GCATCTCGCAACTTTTTGTGGTGATGTTTGCTTGGATTATAGGTTTATGT
TCATTTTCAATTTCATTTTATCCACTGACTGCTCCAAATAAAATTTTTCA
AACTTTTTTTAATTTGTTTGTGTAGGGAGAGCGTAATCTGAAATTCGTAA
TATCTTTAAAACTAGAATCCTTGTCAATTCAAAACTAGAGATGAATCTGA
CTTACATTTGATGGCTAATTTAATGGGAAATTAAGATTGAAAGATTAGAA
TGAAAGAGAAAGTTATTTGTATTATTGTAGCA Coding sequence (CDS) from alignment at sc0000086:407501..409382- >TCONS_00008607 ID=TCONS_00008607|Name=TCONS_00008607|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at sc0000086:407501..409382- (Clytia hemisphaerica)
ATGAAGGCTGCTATTGTCATTGTTTCCACCATCTTGGCTCTTAACAATGG
TAACCCAATCAAAAGAAATGATCTCTTAACCGTAAACGATGGAAAGCTGT
TGATCACTAACGATGGAGAGCTGTTGACTGCGAACGACAGAAAGTTGTTG
ACCGTGAACGACAGAAAGCTGTTGACCGTGAACGATGGAGAGCTGTTGAC
CGTGAACGACGGAAAGCTGTTGACTGCGAACGACGGAAAGCTGTTGACCG
TGAACGACGGAAAGCTGTTGACCGTGAACGACGGAAAGCTATTGACTGCG
AACGACGGAAAGCTGTTGACCGTGAACGACGAAAAGCTGTTGACCGCGAA
CGATGGAGAGCTGTTGACCGCGAACGATGGAGAGCTGTTGACTGCGAACG
ACAGAAAGCTGTTGACCGTGAACGACGGAAAGCTGTTGACTGCGAACGAC
GGAAAGCTGTTGACCGTGAACGACGGAAAGCTGTTGACCGCTAACGACGA
AAAGCTGTTGACCGTGAACGACGGAAAGCTGTTGACCGTGAACGACGGAA
AGCTGTTGACTGCGAACGACGGAAAGCTGTTGACCGTAAACGATGGAAAG
CTGTTGACTGCGAACGACGGAAAGCTGTTGACCGTGAACGACGGAAAGCT
GTTGACCGTGAACGACGAAAAGCTGTTGACTGCGAACGACGGAAAGCTGT
TGACCGTGAACGACGGAAAGCTGTTGACTGCGAACGACGGAAAGCTGTTG
ACCGCGAACGACGGAAAGCTGTTGACCGCTAATGATGATTGTCAAAATGG
TAAAGTAGCATATCAAATACTTATGAACATCGCACGACGGGCATCTCGCA
ACTTTTTGTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008607-exon-sc0000086-1575043694:409241..409382 | TCONS_00008607-exon-sc0000086-1575043694:409241..409382 | Clytia hemisphaerica | exon |
| TCONS_00008607-exon-sc0000086-1575043694:407501..408623 | TCONS_00008607-exon-sc0000086-1575043694:407501..408623 | Clytia hemisphaerica | exon |
| TCONS_00008607-exon-sc0000086-1510915933:409241..409382 | TCONS_00008607-exon-sc0000086-1510915933:409241..409382 | Clytia hemisphaerica | exon |
| TCONS_00008607-exon-sc0000086-1510915933:407501..408623 | TCONS_00008607-exon-sc0000086-1510915933:407501..408623 | Clytia hemisphaerica | exon |
| TCONS_00008607-exon-sc0000086-1491911889:409241..409382 | TCONS_00008607-exon-sc0000086-1491911889:409241..409382 | Clytia hemisphaerica | exon |
| TCONS_00008607-exon-sc0000086-1491911889:407501..408623 | TCONS_00008607-exon-sc0000086-1491911889:407501..408623 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:407501..409382 - |
Blast
The following BLAST results are available for this feature:
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