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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008608 ID=TCONS_00008608|Name=TCONS_00008608|organism=Clytia hemisphaerica|type=transcript|length=1547bp
ttttgcgaTAACTTtttgccataacttacccgagtctTTACAAttgggat
tttttttgtgaCAAACATGGTCATAGTCGTGAAAACTTtgctttttctta
taaagtaatATATTTACACAGTTTGAAATCATAAAATACAGCAAGCACAC
ACAATCAACTATGTCTTGATTTTCGcattagaaaatcacttttatttgga
tttttagagACAGTTGGTATCCTTGACAACGCGGGAGACTCCATTTCATA
GATGGTAGTTTCACCAGTAGCAAAACTGTTATTACTACTGTTTTCATCTG
AGTAAATGATCAGCGTCTTCGGTTTCAACAGTTTCCGTTCGTAAGGTTTG
CTATTGTTATTGAAGTTTGTTATTCCAGCATTTTTGATGATTTCCTTATG
AGATAAACGATGCTCTTTTGATCTGTTTGTTGGTACACACGAAACAGAGT
GTTTGATTAGAGATTTTATAGTTTTGCGGAATCTACCATGCATCTTAGCA
TAGATGAATACGTTAGCGCAACAGTTGGCCGTTTGTATGACTTTAAGAGC
GTCGTTCCAACGAACCATGGCTTTCGAATACGGGATGCCGTCGCCGTCGA
TCCATGATAAGGAGAAAATGATATGCAGCAGATCACGTGGTAATACCAAG
CAAATAAACATGATTTGCATCACGATAATGACACGGATGACGTGCTCTGT
TTCACGTCGGTTGTTTGACATATGTTCCGGATCCGTAGGGCAATACGTAT
TACGTTTCCGTAAACATAATATAATCCTCGTTGTAGTGTAGGTAAATATG
ATAACGAAAAACACATCTCTTGCTAACAAAATTGAAGTCGTAATTTTGAT
ATACTTCAAACGATTTGACGGCGTTACTAAACAACCAACACTCCCATACG
GTAACGGCTTGACGTGATGCGTCAAAGCATCCAAATAATAGGTCTCACAT
AATACAGCGAGGACGACTGCTAGAGCTACGGATATATGAATATACTTCTT
TTTGAATTGACCTTGAAACGGACTACATATAGCACGGTATCGATCAAGCG
CCAAAATACAAATAATTCCAACTGATATATTGATGAAAACACGACCTAAG
AATggtaaaattttacaccctaaCGTTCCAAAATGCCACTGTCCATAACA
TGACGCAATCCAGTAAATGAAAACAAAGGGTGTGAAAATGGATGCACAGA
AGTCCACAGCAGCCAGGTATAAAATCAACACTTCGGAAACTGTTTTACGA
GCTGTTTTATGGAACAgaccaaaacaataacaaatacTTGCGTTACCAAA
AATACCAAGAATCATTACTAAGGTGTATACGAAGAGTTGCATGTAGTCAG
GATATCTGAGTACACATGGTCCCATACGTACAGGTGGTTTTCTTGTTGTG
TTGAAGGTTTTGTTGAATGTACTGTTGAATAGAGTTTGAAATGATGTTGT
AGCAAAGTAATATGTTGTGTTGTTGGTCATTTTTATAATGGTAACATTTG
AATCTGAAATATGACGAAAAGAAATCAAAGTATATGATGCAGTAAGG Run BLAST on NCBI transcript from alignment at sc0000086:421613..423231- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008608 ID=TCONS_00008608|Name=TCONS_00008608|organism=Clytia hemisphaerica|type=transcript|length=1619bp|location=Sequence derived from alignment at sc0000086:421613..423231- (Clytia hemisphaerica)
TTTTGCGATAACTTTTTGCCATAACTTACCCGAGTCTTTACAATTGGGAT
TTTTTTTGTGACAAACATGGTCATAGTCGTGAAAACTTTGCTTTTTCTTA
TAAAGTAATATATTTACACAGTTTGAAATCATAAAATACAGCAAGCACAC
ACAATCAACTATGTCTTGATTTTCGCATTAGAAAATCACTTTTATTTGGA
TTTTTAGAGACAGTTGGTATCCTTGACAACGCGGGAGACTCCATTTCATA
GATGGTAGTTTCACCAGTAGCAAAACTGTTATTACTACTGTTTTCATCTG
AGTAAATGATCAGCGTCTTCGGTTTCAACAGTTTCCGTTCGTAAGGTTTG
CTATTGTTATTGAAGTTTGTTATTCCAGCATTTTTGATGATTTCCTTATG
AGATAAACGATGCTCTTTTGATCTGTTTGTTGGTACACACGAAACAGAGT
GTTTGATTAGAGATTTTATAGTTTTGCGGAATCTACCATGCATCTTAGCA
TAGATGAATACGTTAGCGCAACAGTTGGCCGTTTGTATGACTTTAAGAGC
GTCGTTCCAACGAACCATGGCTTTCGAATACGGGATGCCGTCGCCGTCGA
TCCATGATAAGGAGAAAATGATATGCAGCAGATCACGTGGTAATACCAAG
CAAATAAACATGATTTGCATCACGATAATGACACGGATGACGTGCTCTGT
TTCACGTCGGTTGTTTGACATATGTTCCGGATCCGTAGGGCAATACGTAT
TACGTTTCCGTAAACATAATATAATCCTCGTTGTAGTGTAGGTAAATATG
ATAACGAAAAACACATCTCTTGCTAACAAAATTGAAGTCGTAATTTTGAT
ATACTTCAAACGATTTGACGGCGTTACTAAACAACCAACACTCCCATACG
GTAACGGCTTGACGTGATGCGTCAAAGCATCCAAATAATAGGTCTCACAT
AATACAGCGAGGACGACTGCTAGAGCTACGGATATATGAATATACTTCTT
TTTGAATTGACCTTGAAACGGACTACATATAGCACGGTATCGATCAAGCG
CCAAAATACAAATAATTCCAACTGATATATTGATGAAAACACGACCTAAG
AATGGTAAAATTTTACACCCTAACGTTCCAAAATGCCACTGTCCATAACA
TGACGCAATCCAGTAAATGAAAACAAAGGGTGTGAAAATGGATGCACAGA
AGTCCACAGCAGCCAGGTATAAAATCAACACTTCGGAAACTGTTTTACGA
GCTGTTTTATGGAACAGACCAAAACAATAACAAATACTTGCGTTACCAAA
AATACCAAGAATCATTACTAAGGTGTATACGAAAAGTTGTATGTAGTCAG
GATATCTGAGTACACATGGTCCCATACGTACAGGTGGTTNCAAGGTGTAT
ACGAAGAGTTGCATGTAGTCAGGATATCTGAGTACACATGGTCCCATACG
TACAGGTGGTTTTCTTGTTGTGTTGAAGGTTTTGTTGAATGTACTGTTGA
ATAGAGTTTGAAATGATGTTGTAGCAAAGTAATATGTTGTGTTGTTGGTC
ATTTTTATAATGGTAACATTTGAATCTGAAATATGACGAAAAGAAATCAA
AGTATATGATGCAGTAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008608-exon-sc0000086-1575043694:421910..423231 | TCONS_00008608-exon-sc0000086-1575043694:421910..423231 | Clytia hemisphaerica | exon |
| TCONS_00008608-exon-sc0000086-1575043694:421613..421837 | TCONS_00008608-exon-sc0000086-1575043694:421613..421837 | Clytia hemisphaerica | exon |
| TCONS_00008608-exon-sc0000086-1510915933:421910..423231 | TCONS_00008608-exon-sc0000086-1510915933:421910..423231 | Clytia hemisphaerica | exon |
| TCONS_00008608-exon-sc0000086-1510915933:421613..421837 | TCONS_00008608-exon-sc0000086-1510915933:421613..421837 | Clytia hemisphaerica | exon |
| TCONS_00008608-exon-sc0000086-1491911889:421910..423231 | TCONS_00008608-exon-sc0000086-1491911889:421910..423231 | Clytia hemisphaerica | exon |
| TCONS_00008608-exon-sc0000086-1491911889:421613..421837 | TCONS_00008608-exon-sc0000086-1491911889:421613..421837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:421613..423231 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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