TCONS_00008610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008610
Unique NameTCONS_00008610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008610 ID=TCONS_00008610|Name=TCONS_00008610|organism=Clytia hemisphaerica|type=transcript|length=1416bp
GTCATTTTGTAGACGTTTGCATTTAGCCTTTTTTCTAGATTAAAAGTCAA
GTATTTGAACAGAAGACCAGATAGACAAACATAAAGTATATCATTTTTAT
TATCTTTACAATACCAAACTAATAATCTTCATGAAAAATACCAATATACC
CTTGGAAAAGAAATCACTTTATAAGTTTTATTTGTGATCTTGAGCCACTG
ACTAAATCAcaaaaagttaactttgaagTATCAgtaattttcattctttt
tggtgaaatttttctttttaaaaagGGTGGAATCTCAAGACTTATCATCA
TGAATTTAATCCTTTTGTTTTGTGTTGTCCTGTTCACATCACAAGATTGC
ATCAAAGCTGCAGGTCTACCTGGTAAACAATGTGAGCATATTCAGGAAGC
AGGACAAGAGCTGGCAGAAAATATCAACCAGTTTGATAAACTGTTACAAG
ATGTTGTGATGCGGTGTTATGAAGAAGCACAATTGATCATCGAATCTTCA
TTGAGATTCCTCAAAAATCACATGGGAGGAATGAGACTATCTAAAACTGC
AGGAACAGCGCCGATCGAATCAACCTCAAAAATGGCAGCCATCGGTAAAT
CAATGGGTATTGCATTGAGATTGACATTTTCACAAGGTCATACGAAGTTC
TTTGATTTGGTAAAGAAAGCAGGAGATATGGTTGTCGAAGATTCGATTGT
CACTGATGTATTGATCCAATATAATCAAAATACGAAGAGAAGTGTACCAC
ACATTACACTTGGAACACTAAACAACATCGATGACAAAATCTCCACACTT
CGACAAGACATGAACACATCACTGATCAGCGTTGAGAAGAATCTCCACAA
TGTTGCTAAATTGTTATTCACAATGCTGACTGATAGCTTGAAAGATCTTG
TCAccgatcaaaattttaaaactcATCTGGACAACATCCGTGGAAGCATA
TCATCGTATTTGATATCTGCTGTTCATTCGGTGATCGATTCACACCATGA
GAGGTTCTTCTTACTGGTGAAACATTCCGCACAATTGATTGAAATGATCG
ATAGCATTGTTGCCCCTATGAAAAATGATCCAAAGAAGTTATCAGAAGCA
CTGAGCCCTGCAAAAGAATTGATCGATGAAGCGATCTCTGATTTGAAGAA
ATCAATTGGATTGAATGAAATGAATCGACAGTTGAAAATGAAGTTAACCT
GGATACAAAAAATTTACGGGGACCTCAAAACATCTCTTCAAGGGTAGACT
TTCACTATCTTTATTGTATTGAGCGGGTTTTAGAATAAATCTGAGGAAAT
AACAATTTGAAAATACAAATGTATCGATATTATAGTAGCTTTTATTGGAC
CTGATCCCATTAGAAAAAACTGCGAATCTTGTTTGTGTGACAAATAATCT
GTATGGTGACAAATCG
Run BLAST on NCBI

transcript from alignment at sc0000086:423544..427060-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008610 ID=TCONS_00008610|Name=TCONS_00008610|organism=Clytia hemisphaerica|type=transcript|length=3517bp|location=Sequence derived from alignment at sc0000086:423544..427060- (Clytia hemisphaerica)
GTCATTTTGTAGACGTTTGCATTTAGCCTTTTTTCTAGATTAAAAGTCAA
GTATTTGAACAGAAGACCAGATAGACAAACATAAAGTATATCATTTTTAT
TATCTTTACAATACCAAACTAATAATCTTCATGAAAAATACCAATATACC
CTTGGAAAAGAAATCACTTTATAAGTTTTATTTGTGATCTTGAGCCACTG
ACTAAATCACAAAAAGTTAACTTTGAAGTATCAGTAATTTTCATTCTTTT
TGGTGAAATTTTTCTTTTTAAAAAGGTAAGGAGATTTTTAAATTTTCAAA
CAATTTCTCTTTTCAGGATATGTCAATCTCACAGTATTCCATGTTTTTGT
TAATTCAGCTTTCTCAAACAGGGTTGACGTCAGTGATAGACTTTGAAGAA
ATTTACAAAGTAAATTTTTTCTGAAATGAAATAAAAAACTCTCGTACACA
AAAGAGCGCAAAAGAAGGTCAAGATGGTAAGTATGGCGAATATAAATGAA
ATATCTTTTATCTCATCTATTCTAATGCCGATTGAAACTCTTACTTGCAA
TTTAGCCTCTAGCTTTTGTTAAGGATCCCCTACATAATGGCATAAAATGT
TAAACCAGATCGTCGAATGAGAACATTGATTGTCTCTGAATGAAATTTTT
TCTTCACAAAATTAAGCTTCAATATTCATATAAAATAAGGCTTTTTAAAC
TCTTCACCAATTTCTTCAAATGTTCAACATTCTCCAACATTTTCTTTATG
TTTCATCTTTTAAAATCTGTTAACAATTTTTTCAACATTATTCTTTCTTC
AAAAAGTAATAATTCTTTTTGTCTACCAAAATGCTTCGATTACTTTAGAA
AAGTAAGGTTACGTCGAAAAATCTGGCGGGAAAACGCATTTTTCAGTTAT
TCGAACTCCCGGTTATTCGAAGTAGATATGCTATGATTACCATGGTAGTT
ACCCCCCTTGGAGCTGCAAATAACCAGGAGTCTATTGTATTTACTAGTTG
TGATTTTATTGGCGCGGCCTTCATCCAAGATCATAGATGATTTCTAAGGT
CACTATTTTTCTCGCTGAACACGCGTTGAACAGCCTTTGTTGTCTTCAAA
TATTGTGATACTCATGGTGAAAATAGCAATGTTTAGGCATTGAAATAAAT
TTATTTGTCCCACACATTTAGGGTGGAATCTCAAGACTTATCATCATGAA
TTTAATCCTTTTGTTTTGTGTTGTCCTGTTCACATCACAAGATTGCATCA
AAGCTGCAGGTCTACCTGGTAAACAATGTGAGCATATTCAGGAAGCAGGA
CAAGAGCTGGCAGAAAATATCAACCAGTTTGATAAACTGTTACAAGATGT
TGTGATGCGGTGTTATGAAGAAGCACAATTGATCATCGAATCTTCATTGA
GATTCCTCAAAAATCACATGGGAGGAATGAGACTATCTAAAACTGCAGGA
ACAGGTAATGATGGTCTTGCTTTAAATCCAGCAGTACGTCCAGGGGAAAC
AATCGGAGGTTACGGTGTATGCCGCTTTCAAGGATTCTTTTTTTGACCTT
TAAAGTTCCGCTAAGCATCGTAATAACCATAATAACTATGATTCCAGGCT
CCGTCTAAGGGTCATCAAAAGCAGAAAAAAATCCCGGTTTTACTCTGACA
AGACTATATTGTGGGAAAAAGTGCCGATCTTCCCAAATTTTGGGCTTTTT
TCCTTGATTTTTAACCAAGGAATTTCCGAATTTAAAAATTAAGATTTTAA
CGTATTTGTTTTCTGTTTAGCGCCGATCGAATCAACCTCAAAAATGGCAG
CCATCGGTAAATCAATGGGTATTGCATTGAGATTGACATTTTCACAAGGT
CATACGAAGTTCTTTGATTTGGTAAAGAAAGCAGGAGATATGGTTGTCGA
AGATTCGATTGTCACTGATGTATTGATCCAATATAATCAAAGTAGGTTAT
TCATGTTTTAACTTTTGATCCTTGAAAGAAGCCTTTATACAGAGTTTATG
AAAACAAACCACGTAAGGGTTAAAACGTTTCTGAGCTTCGTTGCAAGTTT
TGATTACAGCTTTACCTTTATCGGCAGAGTACGGTGGAAGGTGGAAGAGT
TTTATTGCAAAACACTCATTTTTCAGATACGAAGAGAAGTGTACCACACA
TTACACTTGGAACACTAAACAACATCGATGACAAAATCTCCACACTTCGA
CAAGACATGAACACATCACTGATCAGCGTTGAGAAGAATCTCCACAATGT
TGCTAAATTGTTATTCACAATGCTGACTGATAGCTTGAAAGATCTTGTCA
CCGATCAAAATTTTAAAACTCGTAAGAATAGACAATTTTATAAATTACGT
CACCAGCAAACACTTACATCATTTTCCAATAAATAATTCTATGGTAATCA
ATTTCCGAGGAGTTCATAAGAAGTTTACTCTATTTGTAATAGTATATAAA
TATCCTTGGTAAAGGCTTCAAAGCGAGGCAGTCACTGTAGTCAAAAAAAT
TAATGAAAATATATTTTCAACAAATTTATCGAGGAAAACCTTCATAAAAT
GATAGAATATATTCCAATGATCAGCTAAGTGTTTAAGTTCGAGTTCGAGT
TGGAATTAGCGAGAGTCAACTGTATTTAAGTTTCGCTGATGAATGACTTT
TTCATTCTTTCAGATCTGGACAACATCCGTGGAAGCATATCATCGTATTT
GATATCTGCTGTTCATTCGGTGATCGATTCACACCATGAGAGGTTCTTCT
TACTGGTGAAACATTCCGCACAATTGATTGAAATGATCGATAGCATTGTT
GCCCCTATGAAAAATGGTACGGCATTGGACTCGAATCTCCTCTTAAACGC
GTTACTTAAGTTTAACAGAATCAGTGCCTTGATAGAGTCACGGTTGTGGC
ATAATTTTGCACCTGTTTTAAAAGGGTTTAAGGTCTTTCCTGGAAAAGAT
TGAAGATTCCATTCTAACCCTCTTCTCTAAAATTAGGTCCCTGTTCCTTT
CAGGTAAAGAGCAAAATGTTCCAGAATAATCAGTGAAATGGAAAGGCTTA
AAGCATAAGGCTTAAAGCATAAGGCATTGAGTAGGTGATTAGGGTCTTAG
ATTGACTTCGATTAAAGGACCATTTAATTATCGACATGAGAAGATTATAT
CCATTATCTAACTTGTTCGTTTCTTTAGATCCAAAGAAGTTATCAGAAGC
ACTGAGCCCTGCAAAAGAATTGATCGATGAAGCGATCTCTGATTTGAAGA
AATCAATTGGATTGAATGAAATGAATCGACAGTTGAAAATGAAGTTAACC
TGGATACAAAAAATTTACGGGGACCTCAAAACATCTCTTCAAGGGTAGAC
TTTCACTATCTTTATTGTATTGAGCGGGTTTTAGAATAAATCTGAGGAAA
TAACAATTTGAAAATACAAATGTATCGATATTATAGTAGCTTTTATTGGA
CCTGATCCCATTAGAAAAAACTGCGAATCTTGTTTGTGTGACAAATAATC
TGTATGGTGACAAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004817XLOC_004817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008610-exon-sc0000086-1575043694:426786..427060TCONS_00008610-exon-sc0000086-1575043694:426786..427060Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1575043694:425607..425889TCONS_00008610-exon-sc0000086-1575043694:425607..425889Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1575043694:425120..425290TCONS_00008610-exon-sc0000086-1575043694:425120..425290Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1575043694:424740..424934TCONS_00008610-exon-sc0000086-1575043694:424740..424934Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1575043694:424245..424397TCONS_00008610-exon-sc0000086-1575043694:424245..424397Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1575043694:423544..423882TCONS_00008610-exon-sc0000086-1575043694:423544..423882Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1510915933:426786..427060TCONS_00008610-exon-sc0000086-1510915933:426786..427060Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1510915933:425607..425889TCONS_00008610-exon-sc0000086-1510915933:425607..425889Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1510915933:425120..425290TCONS_00008610-exon-sc0000086-1510915933:425120..425290Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1510915933:424740..424934TCONS_00008610-exon-sc0000086-1510915933:424740..424934Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1510915933:424245..424397TCONS_00008610-exon-sc0000086-1510915933:424245..424397Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1510915933:423544..423882TCONS_00008610-exon-sc0000086-1510915933:423544..423882Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1491911889:426786..427060TCONS_00008610-exon-sc0000086-1491911889:426786..427060Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1491911889:425607..425889TCONS_00008610-exon-sc0000086-1491911889:425607..425889Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1491911889:425120..425290TCONS_00008610-exon-sc0000086-1491911889:425120..425290Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1491911889:424740..424934TCONS_00008610-exon-sc0000086-1491911889:424740..424934Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1491911889:424245..424397TCONS_00008610-exon-sc0000086-1491911889:424245..424397Clytia hemisphaericaexon
TCONS_00008610-exon-sc0000086-1491911889:423544..423882TCONS_00008610-exon-sc0000086-1491911889:423544..423882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:423544..427060 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	2.51342	0.769735	2.7099	0.99115	1.02576	0.382538	23.6772	21.7461	1.73592	3.40038	9.89247	11.3314	0.819774	1.22285	0.349979	0	4.47033	4.31208
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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