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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008613 ID=TCONS_00008613|Name=TCONS_00008613|organism=Clytia hemisphaerica|type=transcript|length=1441bp TTAAATTCTAAGCtgaaatgtcaaaataaaaagttttccttATCCATTTG TAAATCGACTTTAACATGAGTATAAAGTTGTTTTTCTTCCACGCTTATCA ACCCATATTGAAGGGAGTTCAGACCATCATCTTTCCAAAATTTTGTAGAG TTCCAAAGTTTGTAATTCAGTTTTTGTTGAGCCTCAATGTCACGTTTGGT GTAGCCATTCCGTGGATGGTTCATCATCGTATATCTTGCAGTTTTTATAG ACTGTCTATGAACATTGAAACCATTCATTCGAAGTCTCCAATAAATATTA TCATCTTCGCCTCCCCAGCCATAAAACAGATTTGTAGCTCCGTTAATTTT TCGGAAATGACTTGATAACATCGAGGATACACCACCGAAGATTTCCTTAT ATGGTAATATGTATCGGAAGATGTTGACACCCACTGATAAATGCGTTGGA GATGTTTTGCAACCGTAATCGATTTTATCGTTTTCAGGTAGAAGATCAAC ATCGTGTACGATGAAACATTGATAGGGAAATAATTTCAAACCTTGATCGA ATCCGATATTGAATAATTTAGCTCTATTGAATTTATCTTGGCCAGTTTGC TCCACCACTAGAATTCTATAGTGTAATTTCTGCCGTTTTAAGATTGGATG TAACTGTCGTAGAAGGATAGGTAATTGCAATTCACGGTTTCGGAACGGGA TTACAATCAAAGTGGATTGCTTTGGTTTACAATCTTCAGGTTGCCACCAA CCTCCTTTCTTGACAAACTTGAGCTCGTTCTCATAAAGCCATTCTAACGA GATCTCTTGTTGTAAAACAGCGAGCGGTCCAATAAGAGAAGTTTTGTTGC ATTCAATTGCTTCACCACAATTCGTTTTTATGTGAACATCAATCTCTGGG CTGTGTTGTGAGACATTGTTGCTCTCCAGCCAGTTATTGAAATCCTTAGA GCAGCTACTTATGTTTAATGTGGAACTCAATTCATTAGAATGTATCTTTT GAACCAATTCTGATGTTTCATTAGTGTTGATTCCGGTGGAATTGTCTCGT TTAACACTGAGCAACTTACTTTGGataaaagttgaagaaatttttgcatC GAATTATCTGTGTTATGTTGCATCTGtttcaattttgaatcaaatttcTC ATTCCTCTTCATAATAAGTTTACCGATTGCTTTTACCACGGTCTCGGCGT TAAACGTTGGCTGATCATGGCCTGGTTGAACCACTTGGATGTTTCGGACA TTTTGATATTCACGATTTAAACAAAATATTGAATCTTTAAAAATTGTCAC TGTCAGAAGAAtgaagaataaaatgaaaacttttgaattcgAACTCTTCG CGGTGATAGAAGTGACTTGGACCATCTTGGAGGCCTTACTTTAAATAATA CCGAATCTACGATTCTTTATCATTATATCTTTAACCTTGTT Run BLAST on NCBI transcript from alignment at sc0000086:434726..442687- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008613 ID=TCONS_00008613|Name=TCONS_00008613|organism=Clytia hemisphaerica|type=transcript|length=7962bp|location=Sequence derived from alignment at sc0000086:434726..442687- (Clytia hemisphaerica) TTAAATTCTAAGCTGAAATGTCAAAATAAAAAGTTTTCCTTATCCATTTG
TAAATCGACTTTAACATGAGTATAAAGTTGTTTTTCTTCCACGCTTATCA
ACCCATATTGAAGGGAGTTCAGACCATCATCTTTCCAAAATTTTGTAGAG
TTCCAAAGTTTGTAATTCAGTTTTTGTTGAGCCTCAATGTCACGTTTGGT
GTAGCCATTCCGTGGATGGTTCATCATCGTATATCTTGCAGTTTTTATAG
ACTGTCTATGAACATTGAAACCATTCATTCGAAGTCTCCAATAAATATTA
TCATCTTCGCCTCCCCAGCCATAAAACAGATTTGTAGCTCCGTTAATTTT
TCGGAAATGACTTGATAACATCGAGGATACACCACCGAAGATTTCCTTAT
ATGGTAATATGTATCGGAAGATGTTGACACCCACTGATAAATGCGTTGGA
GATGTTTTGCAACCGTAATCGATTTTATCGTTTTCAGGCAGAAGATCAAC
ATCATGTATAATAATGCATTGATATGGGAATAATTTCAAACCTTGATCAA
ATCCGATATTGAGTAGTTTAGCTCTATTGAATTTATCTTGGTCATTCTGT
TCGACAACCATGATGCGATAGTGTAAATTCTGCCGCTTTAAGATTGGATG
TAACTGTCGTAGAAGGATAGGTAATTGCAATTCACGGTTTCTGAAAGGGA
TTACAATCAAAGTGGATTGTCTTGGTTTACAATCTTCAGGTTGCCACCAT
CCTCCTTTCTTGACAAACTTGAGCTCGTTCTCATAAAGCCATTCTAACGA
GATCTCTTGTTGTAAAACAGCGAGCGGTCCAATAAGAGAAGTTTTGTTGC
ATTCAATTGCTTCACCACAATTCGTTTTTATGTGAACATCAATCTCTGGG
CTGTGTTGTGAGACATTGTTGCTCTCCAGCCAGTTATTGAAATCCTTAGA
GCAGCTACTTATGTTTAATGTGGAACTCAATTCATTAGAATGTATCTTTT
GAACCAATTCTGATGTTTCATTAGTGTTGATTCCGGTGGAATTGTCTCGT
TTAACACTGAGCAACTTACTTTGGATAAAAGTTGAAGAAATTTTTGCATC
GAATTATCTGTGTTATGTTGCATCTGTTTCAATTTTGAATCAAATTTCTC
ATTCCTCTTCATAATAAGTTTACCGATTGCTTTTACCACGGTCTCGGCGT
TAAACGTTGGCTGATCATGGCCTGGTTGAACCACTTGGATGTTTCGGACA
TTTTGATATTCACGATTTAAACAAAATATTGAATCTTTAAAAATTGTCAC
TGTCAGAAGAATGAAGAATAAAATGAAAACTTTTGAATTCGAACTCTTCG
CGGTGATAGAAGTGACTTGGACCATCTTGGAGGCCTTACTTTAAATAATA
CCGAATCTACGATTCTTTATCATTATATCTTTAACCTTGTTTACCACTTG
CCAAGCTCTCTCACGGAAGTTTATCACATTTTCACACGTTTTGTTAGCAG
AAAATTCTTTATACTTTATCAATTATCAGAATCTTGCAGTTGCCAAGTGA
TATTCCATTGAATTATTCCGCCTTCTGGTGTTTTAATTAAGCAATGGTTG
CAAAATTTACTGAAAAAAGGTGTCTTTATTACTTCAGTAGACAAAAGACA
CGAGAATGTGAGAGACCGGCCTCCCTAAAAGTTCATATTTTACATTTTTC
AAGTAATGAAATGTTAAGTTGAGACTCGTAAGATTCGAGATAAATTTAGT
GAACATTCTTAGTCATCAAACCACGATAATTCCAAGCCAAAGGGGAAAAT
TGTCTCCAGTGGGGGCTTTCATAGTCCTCATAGTACCTTTCTTATCAGGA
GGGGGGTTTAGTATGAGAGAGAGAGGGATTTAAAGTATGTTGTAATATGT
CTGTGATGCAGGGTAGCTCCAGCTGTATAGAGAAGTGTGAAGCAAGGATT
TACTCTATAAACAGTGGCAAAAATAACTAATACAATTTTATGTCCCTTTG
TTCAAAATATTTTTTTAGTATCTCTTTTCTATCCTAAAACTGAAAATAAA
AGTATCTTAAAAATATACCCTAAAATTTCGGACGCAAGCACACAAACTAA
AATAAAAACTTTTCTTTATCCATTCTTAAGTTTGCTTTGACGTGAGTATA
AAGTGGCTTCTCTTCAACANAGGGATTTAAGGTATGTTGTAATATGTCTG
TGATACAGGGTAGCTCCAGCTGTATAGAGAAGTGTGAAGCAAGGATTTAC
TCTATAAACAGTGGCAAAAATAACTAATACAATTTTATGTCCCTTTGTTC
AAAATATTTTTTTAGTATCTCTTTTCTATCCTAAAACTGAAAATAAAAGT
ATCTTAAAAATATACCCTAAAATTTCGGACGCAAGCACACAAACTAAAAT
AAAAACTTTTCTTTATCCATTCTTAAGTTTGCTTTGACGTGAGTATAAAG
TGGCTTCTCTTCAACACTAACCAAATCATACTGTAAAGTATTCAGACCAT
CCTGAGCAAAATACCGATTAGAGTTACTCAGCTTTTGATTCAGTTTCGAC
TNAACACTAACCAAGTCATACTGTAAAGTGTTCAGACCATCCTGAGCAAA
ATACCGATTGGAGTTACTCAGCTTTTGATTCAGTTTCGACTGCTCGTTTC
CAGTTGGCCGGTTTTTATTTGAATGTTTCAGCATTTTGTATCGTGCAACT
GAAATAGAGTGTCGGTGTACCGTCAGTCCGCTCGCCCGTAACCGATTATA
CAAATTATCGTCCTCGCCACCCCATCCGTAAAATAGATTGGTAGCTCCGT
TAACTTGCCGGTAATGTTTGGACCACAAGGATGAAACACCACCAAAGATT
TCCTTATAGGGGAGAATATACCTCATAGTGCTTACACCTGCTGATAAATG
TTTCGGCGAAACTTGGCAACCGTAATCGATTTTATCGTTTTCAGGTAGAA
GATCAACATCGTGTACGATGAAACATTGATATGGAAATAATTTCAAACCT
TGATCGAATCCGATATTGAATAATTTAGCTCTATTGAATTTATCTTGGCC
AGTTTGCTCCACCACTAGAATTCTGTAGTGTAATTTCTGCCGTTTTAAGA
TTGGATGTAACTGTCGTAGAAGGATAGGTAATTGCAATTCACGGTTTCGG
AACGGGATTACAATCAAAGTCGATTGCTTTGGTTTACAATCTTCAGGTTG
CCACCAACCTCCTTTCTTGACAAACTTGAGCTCGTTCTCATAAAGCCATT
CTAACGAGATCTCTTGTTGTAAAACAGCGAGCGGTCCAATAAGAGAAGTT
TTGTTGCATTCAATTGCTTCACCACAATTCGTTTTTATGTAAACATCAAT
CTCTGGGCTGTGTTGTGAGACATTGTTGCTCTCCAGCCAGTTATTGAAAT
CCTTAGAGCAGCTACTTATGTTTACTGTGGAACTCAATTCATTAGAATGT
ATCTTTTGAACCAATTCTGATGTTTCATTAGTGTTGATTCCGGTGGAATT
GTCTCGTTTAACACTGAGCAACTTACTTTGGATAAAAGTTGAAGAAATTT
TTGCATCGAATTATCTGTGTTATGTTGCATCTGTTTCAATTTTGAATCAA
ATTTCTCATTCCTCTTCATAATAAGTTTACCGATTGCTTTTACCACGGTC
TCGGCGTTAAACGTTGGCTGATCATGGCCTGGTTGAACCACTTGGATGTT
TCGGACATTTTGATATTCACGATTTAAACAAAATATTGAATCTTTAAAAA
TTGTCACTGTCAGAAGAATGAAGAATAAAATGAAAACTTTTGAATTCGAA
CTCTTCGCGGTGATAGAAGTGACTTGGACCATCTTGGAGGCCTTACTTTA
AATAATACCGAATCTACGATTCTTTATCATTATATCTTTAACCTTGTTTA
CCACTTGCCAAGCTCTCTCACGGAAGTTTATCACATTTTCACACGTTTTG
TTAGCAGAAAATTCTTTATACTTTATCAATTATCAGAATCTTGCAGTTGC
CAAGTGATATTCCATTGAATTATTCCGCCTTCTGGTGTTTTAATTAAGCA
ATGGTTGCAAAATTTACTGAAAAAAGGTGTCTTTATTACTTCAGTAGACA
AAAGACACGAGAATGTGAGAGACCGGCCTCCCTAAAAGTTCATATTTTAC
ATTTTTCAAGTAATGAAATGTTAAGTTGAGACTCGTAAGATTCGAGATAA
ATTTAGTGAACATTCTTAGTCATCAAACCACGATAATTCCAAGCCAAAGG
GGAAAATTGTCTCCAGTGGGGGCTTTCATAGTCCTCATAGTACCTTTCTT
ATCAGGAGGGGGGTTTAGTATGAGAGAGAGAGGGATTTAAAGTATGTTGT
AATATGTCTGTGATGCAGGGTAGCTCCAGCTGTATAGAGAAGTGTGAAGC
AAGGATTTACTCTATAAACAGTGGCAAAAATAACTAATACAATTTTATGT
CCCTTTGTTCAAAATATTTTTTTAGTATCTCTTTTCTATCCTAAAACTGA
AAATAAAAGTATCTTAAAAATATACCCTAAAATTTCGGACGCAAGCACAC
AAACTAAAATAAAAACTTTTCTTTATCCATTCTTAAGTTTGCTTTGACGT
GAGTATAAAGTGGCTTCTCTTCAACACTAACCAAATCATACTGTAAAGTA
TTCAGACCATCCTGAGCAAAATACCGATTAGAGTTACTCAGCTTTTGATT
CAGTTTCGACTGCTCGTTTCCAGTTGGTCGGTTTTTATTTGAATGTTTCA
GCATTTTGTATCGTGCAACTGAAATAGAGTGTCGGTGAACCGTCAGTCCG
TTTGCCCTTAACCGATTATACAAATTATCGTCCTCGCCACCCCATCCGTA
AAAAAGATTCGTAGCTCCGTTAACTTGCCGGTAATGTTTTGACCACAAGG
ATGAAACACCACCAAAGATTTCATTATAGGGGAGAATATACCTCATAGTG
CTTACACCTGCTGATAAATGTTTCGGCGAAACTTGGCAACCGTAATCGAT
TTTATCGTTCTCAGGTAGAAGATCAACATCGTGTACGATGAAACATTGAT
AGGGAAATAATTTCAAACCTTGATCGAATCCGATATTGAATAATTTAGCT
CTATTGAATTTATCTTGGCCAGTTTGCTCCACCACTAGAATTCTATAGTG
TAATTTCTGCCGTTTTAAGATTGGATGTAACTGTCGTAGAAGGATAGGTA
ATTGCAATTCACGGTTTCGGAAAGGGATTACAATCAAAGTGGATTGTTTT
GGTTTACAATCTTCAGGCTGCCACCACCCTCCTTTCTTGACAAACTTGAG
CTCGTTCTCATAAAGCCAATCTAATGAGACATTAGCTTCATTTACAGCCA
ACGGACCAATCAAACTTGAGGCCGTTGAGCAATTCTGTATATCTTTAGCA
GAGCAATGCGTTTTACGGTAAACGGCAAACTCTTCATTATCTGTTGGTGA
ATTTTTCGTATACCACTCTTTAAAGTCATCAGGACATCTTCCATGACTCT
TAGTTGCGTCTGTAACTAAATCTTTTATTGGCGGTGGCCGATAATTATCT
CTATTCTTCAAGGTCGTTTCGTTAACACTTTGAATCATATTGGTGAATAA
ATTCAAGATATTTTGTAGTGAATTCTTAACATTGCTTTCGATCCCTTTTG
CAGTCTCTTTAAGCTTGGAATCCAAAGTAAGTTGTGTCTCTACCTTTGTC
TTGTTGAAGACCTGTTCAATAGCACTCATCGATAAAGTAGGCCGATATTG
ATGGCCCGGTTGAACCAGTTGTATGTTCTTCACATTGCGATACTCACGAT
TGATGCTGAATAATGAATCTTTGAAAATGATAATCAAAAGTAAAAATGCA
ACTACAAAGAATAATTTGCCTTGAGAATTCGACATTGTCTGTTGCCCAAT
CATGATTTTGTNGTTTATCACATTTTCACACGTTTTGTTAGCAGAAAATT
CTTTATACTTTATCAATTATCAGAATCTTGCAGTTGCCAAGTGATATTCC
ATTGAATTATTCCGCCTTCTGGTGTTTTAATTAAGCAATGGTTGCAAAAT
TTACTGAAAAAAGGTGTCTTTATTACTTCAGTAGACAAAAGACACGAGAA
GAAAAAATGTGAGAGACCGGCCTCCCTAAAAGTTCATATTTTACATTTTT
CAAGTAATGAAATGTTAAGTTGAGACTCGTAAGATTCGAGATAAATTTAG
TGAACATTCTTAGTCATCAAACCACGATAATTCCAAGCCAAAGGGGAAAA
TTGTCTCCAGTGGGGGCTTTCATAGTCCTCATAGTACCTTTCTTATCAGG
AGGGGGGTTTAGTATGAGAGAGAGAGGGATTTAAAGTATGTTGTAATATG
TCTGTGATGCAGGGTAGCTCCAGCTGTATAGAGAAGTGTGAAGCAAGGAT
TTACTCTATAAACAGTGGCAAAAATAACTAATACAATTTTATGTCCCTTT
GTTCAAAATATTTTTTTAGTATCTCTTTTCTATCCTAAAACTGAAAATAA
AAGTATCTTAAAAATATACCCTAAAATTTCGGACGCAAGCACACAAACTA
AAATAAAAACTTTTCTTTATCCATTCTTAAGTTTGCTTTGACGTGAGTAT
AAAGTGGCTTCTCTTCAACACTAACCAAATCATACTGTAAAGTATTCAGA
CCATCCTGAGCAAAATACCGATTAGAGTTACTCAGCTTTTGATTCAGTTT
CGACTGCTCGTTTCCAGTTGGTCGGTTTTTATTTGAATGTTTCAGCATTT
TGTATCGTGCAACTGAAATAGAGTGTCGGTGAACCGTCAGTCCGTTTGCC
CTTAACCGATTATACAAATTATCGTCCTCGCCACCCCATCCGTAAAAAAG
ATTCGTAGCTCCGTTAACTTGCCGGTAATGTTTTGACCACAAGGATGAAA
CACCACCAAAGATTTCATTATAGGGGAGAATATACCTCATAGTGCTTACA
CCTGCTGATAAATGTTTCGGCGAAACTTGGCAACCGTAATCGATTTTATC
GTTCTCAGGTAGAAGATCAACATCGTGTACGATGAAACATTGATAGGGAA
ATAATTTCAAACCTTGATCGAATCCGATATTGAATAATTTAGCTCTATTG
AATTTATCTTGGCCAGTTTGCTCCACCACTAGAATTCTATAGTGTAATTT
CTGCCGTTTTAAGATTGGATGTAACTGTCGTAGAAGGATAGGTAATTGCA
ATTCACGGTTTCGGAACGGGATTACAATCAAAGTGGATTGCTTTGGTTTA
CAATCTTCAGGTTGCCACCAACCTCCTTTCTTGACAAACTTGAGCTCGTT
CTCATAAAGCCATTCTAACGAGATCTCTTGTTGTAAAACAGCGAGCGGTC
CAATAAGAGAAGTTTTGTTGCATTCAATTGCTTCACCACAATTCGTTTTT
ATGTGAACATCAATCTCTGGGCTGTGTTGTGAGACATTGTTGCTCTCCAG
CCAGTTATTGAAATCCTTAGAGCAGCTACTTATGTTTAATGTGGAACTCA
ATTCATTAGAATGTATCTTTTGAACCAATTCTGATGTTTCATTAGTGTTG
ATTCCGGTGGAATTGTCTCGTTTAACACTGAGCAACTTACTTTGGATAAA
AGTTGAAGAAATTTTTGCATCGAATTATCTGTGTTATGTTGCATCTGTTT
CAATTTTGAATCAAATTTCTCATTCCTCTTCATAATAAGTTTACCGATTG
CTTTTACCACGGTCTCGGCGTTAAACGTTGGCTGATCATGGCCTGGTTGA
ACCACTTGGATGTTTCGGACATTTTGATATTCACGATTTAAACAAAATAT
TGAATCTTTAAAAATTGTCACTGTCAGAAGAATGAAGAATAAAATGAAAA
CTTTTGAATTCGAACTCTTCGCGGTGATAGAAGTGACTTGGACCATCTTG
GAGGCCTTACTTTAAATAATACCGAATCTACGATTCTTTATCATTATATC
TTTAACCTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008613-exon-sc0000086-1575043694:442201..442687 | TCONS_00008613-exon-sc0000086-1575043694:442201..442687 | Clytia hemisphaerica | exon |
TCONS_00008613-exon-sc0000086-1575043694:434726..435679 | TCONS_00008613-exon-sc0000086-1575043694:434726..435679 | Clytia hemisphaerica | exon |
TCONS_00008613-exon-sc0000086-1510915933:442201..442687 | TCONS_00008613-exon-sc0000086-1510915933:442201..442687 | Clytia hemisphaerica | exon |
TCONS_00008613-exon-sc0000086-1510915933:434726..435679 | TCONS_00008613-exon-sc0000086-1510915933:434726..435679 | Clytia hemisphaerica | exon |
TCONS_00008613-exon-sc0000086-1491911889:442201..442687 | TCONS_00008613-exon-sc0000086-1491911889:442201..442687 | Clytia hemisphaerica | exon |
TCONS_00008613-exon-sc0000086-1491911889:434726..435679 | TCONS_00008613-exon-sc0000086-1491911889:434726..435679 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000086 | supercontig | sc0000086:434726..442687 - |
Blast
BLAST of TCONS_00008613 vs. Swiss-Prot (Human)
Match: B4GT5 (Beta-1,4-galactosyltransferase 5 OS=Homo sapiens GN=B4GALT5 PE=2 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 5.102e-64 Identity = 121/337 (35.91%), Postives = 185/337 (54.90%), Query Frame = -3
Query: 51 RDNSTGINTNETSELVQKIHSNELSSTLNISSCSKDFNNWLESNNVSQHSPEIDVHIKTN-CGEAIECNKTSLIGPLAVLQQEISLEWLYE--NELKFVKKGGWWQPEDCKPKQSTLIVIPFRNRELQLPILLRQLHPILKRQKLHYRILVVEQTGQDKFNRAKLFNIGFDQGLKLFPYQCFIVHDVDLLPENDKIDYGCKTSPTHLSVGVNIFRYILPYKEIFGGVSSMLSSHFRKINGATNLFYGWGGEDDNIYWRLRMNGFNVHRQSIKTARYTMMNHPRNGYTKRDIEAQQKLNYKLWNSTKFWKD-DGLNSLQYGLISVEEKQLYTHVKVDL 1049
RDN I ++++ ++ +S++N S D N+ + PE + + C E + S+ GP+ + EI +++++E ++ +K GG W+P DC P+ I+IPFRNR LP+L R L P+L+RQ+L + VVEQ G FNRA LFN+GF + +K + C I HDVD +PE+D+ YGC P H + ++ + Y+LPY E FGGVS + FRKING N F+GWGGEDD+++ R++ G++V R T +Y + H G E Q Y L +K + DGLN+L Y ++ LY ++ V+L
Sbjct: 54 RDNVRTIGAQVYEQVLRSAYAKR-NSSVNDSDYPLDLNHSETFLQTTTFLPEDFTYFANHTCPERL----PSMKGPIDINMSEIGMDYIHELFSKDPTIKLGGHWKPSDCMPRWKVAILIPFRNRHEHLPVLFRHLLPMLQRQRLQFAFYVVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPNAFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPHHHRG------EVQFLGRYALLRKSKERQGLDGLNNLNY-FANITYDALYKNITVNL 378
The following BLAST results are available for this feature:
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