TCONS_00008615 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008615
Unique NameTCONS_00008615
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008615 ID=TCONS_00008615|Name=TCONS_00008615|organism=Clytia hemisphaerica|type=transcript|length=1375bp
TTAAATTCTAAGCtgaaatgtcaaaataaaaagttttccttATCCATTTG
TAAATCGACTTTAACATGAGTATAAAGTTGTTTTTCTTCCACGCTTATCA
ACCCATATTGAAGGGAGTTCAGACCATCATCTTTCCAAAATTTTGTAGAG
TTCCAAAGTTTGTAATTCAGTTTTTGTTGAGCCTCAATGTCACGTTTGGT
GTAGCCATTCCGTGGATGGTTCATCATCGTATATCTTGCAGTTTTTATAG
ACTGTCTATGAACATTGAAACCATTCATTCGAAGTCTCCAATAAATATTA
TCATCTTCGCCTCCCCAGCCATAAAACAGATTTGTAGCTCCGTTAATTTT
TCGGAAATGACTTGATAACATCGAGGATACACCACCGAAGATTTCCTTAT
ATGGTAATATGTATCGGAAGATGTTGACACCCACTGATAAATGCGTTGGA
GATGTTTTGCAACCGTAATCGATTTTATCGTTTTCAGGTAGAAGATCAAC
ATCGTGTACGATGAAACATTGATAGGGAAATAATTTCAAACCTTGATCGA
ATCCGATATTGAATAATTTAGCTCTATTGAATTTATCTTGGCCAGTTTGC
TCCACCACTAGAATTCTATAGTGTAATTTCTGCCGTTTTAAGATTGGATG
TAACTGTCGTAGAAGGATAGGTAATTGCAATTCACGGTTTCGGAAAGGGA
TTACAATCAAAGTGGATTGTTTTGGTTTACAATCTTCAGGCTGCCACCAC
CCTCCTTTCTTGACAAACTTGAGCTCGTTCTCATAAAGCCAATCTAATGA
GACATTAGCTTCATTTACAGCCAACGGACCAATCAAACTTGAGGCCGTTG
AGCAATTCTGTATATCTTTAGCAGAGCAATGCGTTTTACGGTAAACGGCA
AACTCTTCATTATCTGTTGGTGAATTTTTCGTATACCACTCTTTAAAGTC
ATCAGGACATCTTCCATGACTCTTAGTTGCGTCTGTAACTAAATCTTTTA
TTGGCGGTGGCCGATAATTATCTCTATTCTTCAAGGTCGTTTCGTTAACA
CTTTGAATCATATTGGTGAATAAATTCAAGATATTTTGTAGTGAATTCTT
AACATTGCTTTCGATCCCTTTTGCAGTCTCTTTAAGCTTGGAATCCAAAG
TAAGTTGTGTCTCTACCTTTGTCTTGTTGAAGACCTGTTCAATAGCACTC
ATCGATAAAGTAGGCCGATATTGATGGCCCGGTTGAACCAGTTGTATGTT
CTTCACATTGCGATACTCACGATTGATGCTGAATAATGaatctttgaaaa
tgataatcAAAAGTAAAAATGCAACTACAAAGAATAATTTGCCTTGAGAA
TTCGACATTGTCTGTTGCCCAATCA
Run BLAST on NCBI

transcript from alignment at sc0000086:436786..442687-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008615 ID=TCONS_00008615|Name=TCONS_00008615|organism=Clytia hemisphaerica|type=transcript|length=5902bp|location=Sequence derived from alignment at sc0000086:436786..442687- (Clytia hemisphaerica)
TTAAATTCTAAGCTGAAATGTCAAAATAAAAAGTTTTCCTTATCCATTTG
TAAATCGACTTTAACATGAGTATAAAGTTGTTTTTCTTCCACGCTTATCA
ACCCATATTGAAGGGAGTTCAGACCATCATCTTTCCAAAATTTTGTAGAG
TTCCAAAGTTTGTAATTCAGTTTTTGTTGAGCCTCAATGTCACGTTTGGT
GTAGCCATTCCGTGGATGGTTCATCATCGTATATCTTGCAGTTTTTATAG
ACTGTCTATGAACATTGAAACCATTCATTCGAAGTCTCCAATAAATATTA
TCATCTTCGCCTCCCCAGCCATAAAACAGATTTGTAGCTCCGTTAATTTT
TCGGAAATGACTTGATAACATCGAGGATACACCACCGAAGATTTCCTTAT
ATGGTAATATGTATCGGAAGATGTTGACACCCACTGATAAATGCGTTGGA
GATGTTTTGCAACCGTAATCGATTTTATCGTTTTCAGGCAGAAGATCAAC
ATCATGTATAATAATGCATTGATATGGGAATAATTTCAAACCTTGATCAA
ATCCGATATTGAGTAGTTTAGCTCTATTGAATTTATCTTGGTCATTCTGT
TCGACAACCATGATGCGATAGTGTAAATTCTGCCGCTTTAAGATTGGATG
TAACTGTCGTAGAAGGATAGGTAATTGCAATTCACGGTTTCTGAAAGGGA
TTACAATCAAAGTGGATTGTCTTGGTTTACAATCTTCAGGTTGCCACCAT
CCTCCTTTCTTGACAAACTTGAGCTCGTTCTCATAAAGCCATTCTAACGA
GATCTCTTGTTGTAAAACAGCGAGCGGTCCAATAAGAGAAGTTTTGTTGC
ATTCAATTGCTTCACCACAATTCGTTTTTATGTGAACATCAATCTCTGGG
CTGTGTTGTGAGACATTGTTGCTCTCCAGCCAGTTATTGAAATCCTTAGA
GCAGCTACTTATGTTTAATGTGGAACTCAATTCATTAGAATGTATCTTTT
GAACCAATTCTGATGTTTCATTAGTGTTGATTCCGGTGGAATTGTCTCGT
TTAACACTGAGCAACTTACTTTGGATAAAAGTTGAAGAAATTTTTGCATC
GAATTATCTGTGTTATGTTGCATCTGTTTCAATTTTGAATCAAATTTCTC
ATTCCTCTTCATAATAAGTTTACCGATTGCTTTTACCACGGTCTCGGCGT
TAAACGTTGGCTGATCATGGCCTGGTTGAACCACTTGGATGTTTCGGACA
TTTTGATATTCACGATTTAAACAAAATATTGAATCTTTAAAAATTGTCAC
TGTCAGAAGAATGAAGAATAAAATGAAAACTTTTGAATTCGAACTCTTCG
CGGTGATAGAAGTGACTTGGACCATCTTGGAGGCCTTACTTTAAATAATA
CCGAATCTACGATTCTTTATCATTATATCTTTAACCTTGTTTACCACTTG
CCAAGCTCTCTCACGGAAGTTTATCACATTTTCACACGTTTTGTTAGCAG
AAAATTCTTTATACTTTATCAATTATCAGAATCTTGCAGTTGCCAAGTGA
TATTCCATTGAATTATTCCGCCTTCTGGTGTTTTAATTAAGCAATGGTTG
CAAAATTTACTGAAAAAAGGTGTCTTTATTACTTCAGTAGACAAAAGACA
CGAGAATGTGAGAGACCGGCCTCCCTAAAAGTTCATATTTTACATTTTTC
AAGTAATGAAATGTTAAGTTGAGACTCGTAAGATTCGAGATAAATTTAGT
GAACATTCTTAGTCATCAAACCACGATAATTCCAAGCCAAAGGGGAAAAT
TGTCTCCAGTGGGGGCTTTCATAGTCCTCATAGTACCTTTCTTATCAGGA
GGGGGGTTTAGTATGAGAGAGAGAGGGATTTAAAGTATGTTGTAATATGT
CTGTGATGCAGGGTAGCTCCAGCTGTATAGAGAAGTGTGAAGCAAGGATT
TACTCTATAAACAGTGGCAAAAATAACTAATACAATTTTATGTCCCTTTG
TTCAAAATATTTTTTTAGTATCTCTTTTCTATCCTAAAACTGAAAATAAA
AGTATCTTAAAAATATACCCTAAAATTTCGGACGCAAGCACACAAACTAA
AATAAAAACTTTTCTTTATCCATTCTTAAGTTTGCTTTGACGTGAGTATA
AAGTGGCTTCTCTTCAACANAGGGATTTAAGGTATGTTGTAATATGTCTG
TGATACAGGGTAGCTCCAGCTGTATAGAGAAGTGTGAAGCAAGGATTTAC
TCTATAAACAGTGGCAAAAATAACTAATACAATTTTATGTCCCTTTGTTC
AAAATATTTTTTTAGTATCTCTTTTCTATCCTAAAACTGAAAATAAAAGT
ATCTTAAAAATATACCCTAAAATTTCGGACGCAAGCACACAAACTAAAAT
AAAAACTTTTCTTTATCCATTCTTAAGTTTGCTTTGACGTGAGTATAAAG
TGGCTTCTCTTCAACACTAACCAAATCATACTGTAAAGTATTCAGACCAT
CCTGAGCAAAATACCGATTAGAGTTACTCAGCTTTTGATTCAGTTTCGAC
TNAACACTAACCAAGTCATACTGTAAAGTGTTCAGACCATCCTGAGCAAA
ATACCGATTGGAGTTACTCAGCTTTTGATTCAGTTTCGACTGCTCGTTTC
CAGTTGGCCGGTTTTTATTTGAATGTTTCAGCATTTTGTATCGTGCAACT
GAAATAGAGTGTCGGTGTACCGTCAGTCCGCTCGCCCGTAACCGATTATA
CAAATTATCGTCCTCGCCACCCCATCCGTAAAATAGATTGGTAGCTCCGT
TAACTTGCCGGTAATGTTTGGACCACAAGGATGAAACACCACCAAAGATT
TCCTTATAGGGGAGAATATACCTCATAGTGCTTACACCTGCTGATAAATG
TTTCGGCGAAACTTGGCAACCGTAATCGATTTTATCGTTTTCAGGTAGAA
GATCAACATCGTGTACGATGAAACATTGATATGGAAATAATTTCAAACCT
TGATCGAATCCGATATTGAATAATTTAGCTCTATTGAATTTATCTTGGCC
AGTTTGCTCCACCACTAGAATTCTGTAGTGTAATTTCTGCCGTTTTAAGA
TTGGATGTAACTGTCGTAGAAGGATAGGTAATTGCAATTCACGGTTTCGG
AACGGGATTACAATCAAAGTCGATTGCTTTGGTTTACAATCTTCAGGTTG
CCACCAACCTCCTTTCTTGACAAACTTGAGCTCGTTCTCATAAAGCCATT
CTAACGAGATCTCTTGTTGTAAAACAGCGAGCGGTCCAATAAGAGAAGTT
TTGTTGCATTCAATTGCTTCACCACAATTCGTTTTTATGTAAACATCAAT
CTCTGGGCTGTGTTGTGAGACATTGTTGCTCTCCAGCCAGTTATTGAAAT
CCTTAGAGCAGCTACTTATGTTTACTGTGGAACTCAATTCATTAGAATGT
ATCTTTTGAACCAATTCTGATGTTTCATTAGTGTTGATTCCGGTGGAATT
GTCTCGTTTAACACTGAGCAACTTACTTTGGATAAAAGTTGAAGAAATTT
TTGCATCGAATTATCTGTGTTATGTTGCATCTGTTTCAATTTTGAATCAA
ATTTCTCATTCCTCTTCATAATAAGTTTACCGATTGCTTTTACCACGGTC
TCGGCGTTAAACGTTGGCTGATCATGGCCTGGTTGAACCACTTGGATGTT
TCGGACATTTTGATATTCACGATTTAAACAAAATATTGAATCTTTAAAAA
TTGTCACTGTCAGAAGAATGAAGAATAAAATGAAAACTTTTGAATTCGAA
CTCTTCGCGGTGATAGAAGTGACTTGGACCATCTTGGAGGCCTTACTTTA
AATAATACCGAATCTACGATTCTTTATCATTATATCTTTAACCTTGTTTA
CCACTTGCCAAGCTCTCTCACGGAAGTTTATCACATTTTCACACGTTTTG
TTAGCAGAAAATTCTTTATACTTTATCAATTATCAGAATCTTGCAGTTGC
CAAGTGATATTCCATTGAATTATTCCGCCTTCTGGTGTTTTAATTAAGCA
ATGGTTGCAAAATTTACTGAAAAAAGGTGTCTTTATTACTTCAGTAGACA
AAAGACACGAGAATGTGAGAGACCGGCCTCCCTAAAAGTTCATATTTTAC
ATTTTTCAAGTAATGAAATGTTAAGTTGAGACTCGTAAGATTCGAGATAA
ATTTAGTGAACATTCTTAGTCATCAAACCACGATAATTCCAAGCCAAAGG
GGAAAATTGTCTCCAGTGGGGGCTTTCATAGTCCTCATAGTACCTTTCTT
ATCAGGAGGGGGGTTTAGTATGAGAGAGAGAGGGATTTAAAGTATGTTGT
AATATGTCTGTGATGCAGGGTAGCTCCAGCTGTATAGAGAAGTGTGAAGC
AAGGATTTACTCTATAAACAGTGGCAAAAATAACTAATACAATTTTATGT
CCCTTTGTTCAAAATATTTTTTTAGTATCTCTTTTCTATCCTAAAACTGA
AAATAAAAGTATCTTAAAAATATACCCTAAAATTTCGGACGCAAGCACAC
AAACTAAAATAAAAACTTTTCTTTATCCATTCTTAAGTTTGCTTTGACGT
GAGTATAAAGTGGCTTCTCTTCAACACTAACCAAATCATACTGTAAAGTA
TTCAGACCATCCTGAGCAAAATACCGATTAGAGTTACTCAGCTTTTGATT
CAGTTTCGACTGCTCGTTTCCAGTTGGTCGGTTTTTATTTGAATGTTTCA
GCATTTTGTATCGTGCAACTGAAATAGAGTGTCGGTGAACCGTCAGTCCG
TTTGCCCTTAACCGATTATACAAATTATCGTCCTCGCCACCCCATCCGTA
AAAAAGATTCGTAGCTCCGTTAACTTGCCGGTAATGTTTTGACCACAAGG
ATGAAACACCACCAAAGATTTCATTATAGGGGAGAATATACCTCATAGTG
CTTACACCTGCTGATAAATGTTTCGGCGAAACTTGGCAACCGTAATCGAT
TTTATCGTTCTCAGGTAGAAGATCAACATCGTGTACGATGAAACATTGAT
AGGGAAATAATTTCAAACCTTGATCGAATCCGATATTGAATAATTTAGCT
CTATTGAATTTATCTTGGCCAGTTTGCTCCACCACTAGAATTCTATAGTG
TAATTTCTGCCGTTTTAAGATTGGATGTAACTGTCGTAGAAGGATAGGTA
ATTGCAATTCACGGTTTCGGAAAGGGATTACAATCAAAGTGGATTGTTTT
GGTTTACAATCTTCAGGCTGCCACCACCCTCCTTTCTTGACAAACTTGAG
CTCGTTCTCATAAAGCCAATCTAATGAGACATTAGCTTCATTTACAGCCA
ACGGACCAATCAAACTTGAGGCCGTTGAGCAATTCTGTATATCTTTAGCA
GAGCAATGCGTTTTACGGTAAACGGCAAACTCTTCATTATCTGTTGGTGA
ATTTTTCGTATACCACTCTTTAAAGTCATCAGGACATCTTCCATGACTCT
TAGTTGCGTCTGTAACTAAATCTTTTATTGGCGGTGGCCGATAATTATCT
CTATTCTTCAAGGTCGTTTCGTTAACACTTTGAATCATATTGGTGAATAA
ATTCAAGATATTTTGTAGTGAATTCTTAACATTGCTTTCGATCCCTTTTG
CAGTCTCTTTAAGCTTGGAATCCAAAGTAAGTTGTGTCTCTACCTTTGTC
TTGTTGAAGACCTGTTCAATAGCACTCATCGATAAAGTAGGCCGATATTG
ATGGCCCGGTTGAACCAGTTGTATGTTCTTCACATTGCGATACTCACGAT
TGATGCTGAATAATGAATCTTTGAAAATGATAATCAAAAGTAAAAATGCA
ACTACAAAGAATAATTTGCCTTGAGAATTCGACATTGTCTGTTGCCCAAT
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004820XLOC_004820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008615-exon-sc0000086-1575043694:442201..442687TCONS_00008615-exon-sc0000086-1575043694:442201..442687Clytia hemisphaericaexon
TCONS_00008615-exon-sc0000086-1575043694:436786..437673TCONS_00008615-exon-sc0000086-1575043694:436786..437673Clytia hemisphaericaexon
TCONS_00008615-exon-sc0000086-1510915933:442201..442687TCONS_00008615-exon-sc0000086-1510915933:442201..442687Clytia hemisphaericaexon
TCONS_00008615-exon-sc0000086-1510915933:436786..437673TCONS_00008615-exon-sc0000086-1510915933:436786..437673Clytia hemisphaericaexon
TCONS_00008615-exon-sc0000086-1491911889:442201..442687TCONS_00008615-exon-sc0000086-1491911889:442201..442687Clytia hemisphaericaexon
TCONS_00008615-exon-sc0000086-1491911889:436786..437673TCONS_00008615-exon-sc0000086-1491911889:436786..437673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:436786..442687 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0337048	0	0.308395	1.26197	0.00395225	0.425943	0.361336	0.000509317	0.119754	0.10856	0	0	0.0741651	0.0754751	0.297419	0	0.468951	0.00131523	0.16825	0	0.0836101	0.0986847	0.141313	0	0	0	0.0344078
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003859Galactosyl_T
IPR029044Nucleotide-diphossugar_trans
IPR027995Galactosyl_T_N
IPR027791Galactosyl_T_C
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
[Close]
BLAST of TCONS_00008615 vs. Swiss-Prot (Human)
Match: B4GT5 (Beta-1,4-galactosyltransferase 5 OS=Homo sapiens GN=B4GALT5 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.845e-64
Identity = 111/289 (38.41%), Postives = 165/289 (57.09%), Query Frame = -3 
Query:   51 EEFAVYRKTHCSAKDIQNCSTASSLIGPLAVNEANVSLDWLYE--NELKFVKKGGWWQPEDCKPKQSTLIVIPFRNRELQLPILLRQLHPILKRQKLHYRILVVEQTGQDKFNRAKLFNIGFDQGLKLFPYQCFIVHDVDLLPENDKIDYGCKTSPTHLSVGVNIFRYILPYKEIFGGVSSMLSSHFRKINGATNLFYGWGGEDDNIYWRLRMNGFNVHRQSIKTARYTMMNHPRNGYTKRDIEAQQKLNYKLWNSTKFWKD-DGLNSLQYGLISVEEKQLYTHVKVDL 908
            E+F  +    C  +         S+ GP+ +N + + +D+++E  ++   +K GG W+P DC P+    I+IPFRNR   LP+L R L P+L+RQ+L +   VVEQ G   FNRA LFN+GF + +K   + C I HDVD +PE+D+  YGC   P H +  ++ + Y+LPY E FGGVS +    FRKING  N F+GWGGEDD+++ R++  G++V R    T +Y  + H   G      E Q    Y L   +K  +  DGLN+L Y   ++    LY ++ V+L
Sbjct:  104 EDFTYFANHTCPER-------LPSMKGPIDINMSEIGMDYIHELFSKDPTIKLGGHWKPSDCMPRWKVAILIPFRNRHEHLPVLFRHLLPMLQRQRLQFAFYVVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPNAFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPHHHRG------EVQFLGRYALLRKSKERQGLDGLNNLNY-FANITYDALYKNITVNL 378
The following BLAST results are available for this feature:
BLAST of TCONS_00008615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT53.845e-6438.41Beta-1,4-galactosyltransferase 5 OS=Homo sapiens G... [more]
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