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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008622 ID=TCONS_00008622|Name=TCONS_00008622|organism=Clytia hemisphaerica|type=transcript|length=1727bp
TCATTATGCTAGCCTTGAATGcagaaagtaaaagaaaaagtttggaaaag
ggaaAGCATGACGACCTCAGATGGAAACAAATCTGCTGACACAGCATTTG
GAGTCAACCAAAATGGTAGCACAGCTACGACGGCCACAAACCctcaaaag
aagcaaacaacACGAAAAGTTTTCAGCCATGCAGCTCAACTAGAACTCGA
AAACGCTTTTCGTATGTCACCCTATTTGACAGCTTGGAAACGACAATGTC
TCTCACAAAAATTGAGCCTGACCGAAAGACAAGTTAGAGTATGGTTCCAA
AATCGACGCATGCGTATTAAAAGTGAGCGCGGACGTTGCGGTAAACCATC
ACCAACGAAAAAACACGTCGAGACAAGCAGCACCAAAGCGTCACCTCCAC
CCGATTACAGCACAGCCACAACGACCACAGGCTTTCCGAACAGTTTAATG
CCTTATACTTCTTTCCAGCCTAGTTTCCAATCTCCTTTCAATCAAGCTCC
AATCTACACAGCCACTTATCAAAATGGAGCATTTTCAGAAGGATTATCGT
TGCCTTTCAACGTATTATCGAgcaaaatcaatcaaatttcGAACAATGAT
TCTACAGTTTCGACGACTAACTTTCCAATTACGACCAATAGTTATCCTAT
TACGACATCCAACACATTTTACGATACTAAAAACACAGACTGTTTACGGC
TTCCATGCTACGCCACCAGTAGCGAAAGTTACGAGCAACAACAAAATCAG
TTTCTTGAACAACAGAAAGGacaacaaattcaacaaaacactcaacaatt
ttttcaacaagATAATGAAACTGCTCAATTTATAAACAACTTTGATATTA
CAGAATTGAGAGCGTTGACAACCTGCTCTTACGAATCTTCTTTAGCTGAT
GTGATGACTTATGGGAATGTTATTTAAAACTGTTATCTAGGATCTTCAGC
CCCAGCTGTAATGTGGAAACCATGCCAGCGTAATTAGACTTACTCCATTG
ATGGTGGTTTCTACATAATAGTAAGAAAAAGTACACATTGAAAGCTAACA
GACTCTAAGGCATAAATCTTCTGACCTGCAGCTTCCCGAGTTCAAATTTT
ATCGCCTGAAGGAACAGTGTTGGATAATTGCAAGTATTGATCCAGTCTAA
ATGAATCCTTCTAAAATCGAACTCGAACCCTTTAGAAAAGGTTTTAAGGG
ATAAAAGAGATGTATTTAGTcagcaaaaatgaaaatgggGAATACAGTGT
TTGTTTTGGGTCGTTTGAAGGAACTCAATTAGATTTAGAATTTATTAGAA
GATGGTATTTGCTGAGTTTATTTGGTAAAGATtatctaaaactcaaaaag
agaAATGGACTACAATTCAGATTTCTCATTATTCTTTTAGGTTGTACATA
ATTTACTCAGAATATCTATGTATATAATTTAGgttttttatcaaagtttt
tttcttagaatatttttttgaatactTAGTAAGAATATCAGACAAGATGT
ACAGTCTTTCCTCTCTTGGAACTAAGAATGTTCGGGTGTTCTTAGGCATG
CTCTCAACAtgcaatgctggacaaaaggttgtagacaaatgaaatttcag
tgaaaaatgatgagaaatagagcaaaatgactcttcactgtgtctgaaag
gggatggaagttaagaaaaacacttttgaagtcgtttcattgcttttgaa
ttgcttttgaggaaaccacaagcaaaa Run BLAST on NCBI transcript from alignment at sc0000086:518432..520254- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008622 ID=TCONS_00008622|Name=TCONS_00008622|organism=Clytia hemisphaerica|type=transcript|length=1823bp|location=Sequence derived from alignment at sc0000086:518432..520254- (Clytia hemisphaerica)
TCATTATGCTAGCCTTGAATGCAGAAAGTAAAAGAAAAAGTTTGGAAAAG
GGGTAAAATTAGATTTTTAATGCAAGTAACTAAAATTTTAGTTCATCTTG
TTCTCCCTGCTTTTGATTGGTAATTGGTGATATTTTTCTTCATTTTAGAA
AGCATGACGACCTCAGATGGAAACAAATCTGCTGACACAGCATTTGGAGT
CAACCAAAATGGTAGCACAGCTACGACGGCCACAAACCCTCAAAAGAAGC
AAACAACACGAAAAGTTTTCAGCCATGCAGCTCAACTAGAACTCGAAAAC
GCTTTTCGTATGTCACCCTATTTGACAGCTTGGAAACGACAATGTCTCTC
ACAAAAATTGAGCCTGACCGAAAGACAAGTTAGAGTATGGTTCCAAAATC
GACGCATGCGTATTAAAAGTGAGCGCGGACGTTGCGGTAAACCATCACCA
ACGAAAAAACACGTCGAGACAAGCAGCACCAAAGCGTCACCTCCACCCGA
TTACAGCACAGCCACAACGACCACAGGCTTTCCGAACAGTTTAATGCCTT
ATACTTCTTTCCAGCCTAGTTTCCAATCTCCTTTCAATCAAGCTCCAATC
TACACAGCCACTTATCAAAATGGAGCATTTTCAGAAGGATTATCGTTGCC
TTTCAACGTATTATCGAGCAAAATCAATCAAATTTCGAACAATGATTCTA
CAGTTTCGACGACTAACTTTCCAATTACGACCAATAGTTATCCTATTACG
ACATCCAACACATTTTACGATACTAAAAACACAGACTGTTTACGGCTTCC
ATGCTACGCCACCAGTAGCGAAAGTTACGAGCAACAACAAAATCAGTTTC
TTGAACAACAGAAAGGACAACAAATTCAACAAAACACTCAACAATTTTTT
CAACAAGATAATGAAACTGCTCAATTTATAAACAACTTTGATATTACAGA
ATTGAGAGCGTTGACAACCTGCTCTTACGAATCTTCTTTAGCTGATGTGA
TGACTTATGGGAATGTTATTTAAAACTGTTATCTAGGATCTTCAGCCCCA
GCTGTAATGTGGAAACCATGCCAGCGTAATTAGACTTACTCCATTGATGG
TGGTTTCTACATAATAGTAAGAAAAAGTACACATTGAAAGCTAACAGACT
CTAAGGCATAAATCTTCTGACCTGCAGCTTCCCGAGTTCAAATTTTATCG
CCTGAAGGAACAGTGTTGGATAATTGCAAGTATTGATCCAGTCTAAATGA
ATCCTTCTAAAATCGAACTCGAACCCTTTAGAAAAGGTTTTAAGGGATAA
AAGAGATGTATTTAGTCAGCAAAAATGAAAATGGGGAATACAGTGTTTGT
TTTGGGTCGTTTGAAGGAACTCAATTAGATTTAGAATTTATTAGAAGATG
GTATTTGCTGAGTTTATTTGGTAAAGATTATCTAAAACTCAAAAAGAGAA
ATGGACTACAATTCAGATTTCTCATTATTCTTTTAGGTTGTACATAATTT
ACTCAGAATATCTATGTATATAATTTAGGTTTTTTATCAAAGTTTTTTTC
TTAGAATATTTTTTTGAATACTTAGTAAGAATATCAGACAAGATGTACAG
TCTTTCCTCTCTTGGAACTAAGAATGTTCGGGTGTTCTTAGGCATGCTCT
CAACATGCAATGCTGGACAAAAGGTTGTAGACAAATGAAATTTCAGTGAA
AAATGATGAGAAATAGAGCAAAATGACTCTTCACTGTGTCTGAAAGGGGA
TGGAAGTTAAGAAAAACACTTTTGAAGTCGTTTCATTGCTTTTGAATTGC
TTTTGAGGAAACCACAAGCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008622-exon-sc0000086-1575043694:520203..520254 | TCONS_00008622-exon-sc0000086-1575043694:520203..520254 | Clytia hemisphaerica | exon |
| TCONS_00008622-exon-sc0000086-1575043694:518432..520106 | TCONS_00008622-exon-sc0000086-1575043694:518432..520106 | Clytia hemisphaerica | exon |
| TCONS_00008622-exon-sc0000086-1510915933:520203..520254 | TCONS_00008622-exon-sc0000086-1510915933:520203..520254 | Clytia hemisphaerica | exon |
| TCONS_00008622-exon-sc0000086-1510915933:518432..520106 | TCONS_00008622-exon-sc0000086-1510915933:518432..520106 | Clytia hemisphaerica | exon |
| TCONS_00008622-exon-sc0000086-1491911889:520203..520254 | TCONS_00008622-exon-sc0000086-1491911889:520203..520254 | Clytia hemisphaerica | exon |
| TCONS_00008622-exon-sc0000086-1491911889:518432..520106 | TCONS_00008622-exon-sc0000086-1491911889:518432..520106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:518432..520254 - |
Blast
The following BLAST results are available for this feature:
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