TCONS_00008627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008627
Unique NameTCONS_00008627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2048

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008627 ID=TCONS_00008627|Name=TCONS_00008627|organism=Clytia hemisphaerica|type=transcript|length=2048bp
TGTGAGCGATGATAAAATCCTTGAATCAAGTGTTGCGAGCGATGACAAAA
TTCTTGAACCAACTGTTGCGAGCaatgacaaaatctttaaatcaaGTGTT
GCGAGCAATGACAAAATCCTTGAACCAAGTGTTGTGAGCGATGACAAAAT
CCTTGAATCAGGTGTTACGACCGAAGACAAAATCCTTGAATCAAGTGTCA
CAAGCGATGATAAGTTTTTTAAAGTGAGTGTCGCCAGTGATCGCAATGTC
TTTGATGACGATGATGTATTTGAGACAGCTCCGACGTCGACCTCATCATC
AAATATCTTCCTTTCTACGAGTCCATCAATGGAGTTTTTGGATCAAACTG
CCAAGGGAACTGATTCCCAACAACGGGAAAAGGCCGTCAGATTTTCTTCT
GACATCGAGGTGTTAGAGAGATCGTCAATCGAGGAATGTTATTCAAAACA
CCCAGACGATAATGTTAGATCTTTATGTAACATTGATGTCTTGGAGAAAT
TATCAACTGAGGAATGCTTTTCAGATCTTCCCAAGGCTACTGTAAAATCT
TTATGTAATTTTAAAAACGAAGGAGTTTCTGCAACTGCCGTTGTAACTGA
GTCCGCCGAAAAGTCTTCTGCAGAAAAACCGACAGAAGAAGTTGACACGA
CCAACAATATCACTGTATCCAATAGTGATAGTGGACAAGATTTCGTCAAG
CTTTACATGGGGTCTAGCGATCATACCGAACCCACCATGGACAAACAGAA
GCTTGACACTACCACAAATCTGATCACAAAAATCGAATTACCAAGCATTG
TAGTTACTGGCTCCGAGAAAAGTGAAAACGGAGAAAATGCATTGACATCT
CAAGGTGTATCAAATCTGATCACAAAAATCGAATTACCAAGCATAATAGT
TACTGGCCCCGAGAAAAGTGAAAACGGAGAAAATGCATTGACATCTCAAG
GTGTAGATGTAGTTGATAAAACAGAAAATCCTTCCGAGCGAACAGACCCT
ACCGTCGTGGAAATCTCATCAGTCTTGGAAACTACACCACTACGAGAACA
CGAGACAGTTGAGTCAGAAACGTCGACCGAGACAATCCAACACGTTGGAG
ACAATGCTTCTGATAGCAGTGGTGATTCGTTGGTCGTAATTGTCGATTCA
GGTTCTAAATTGGACATAGTGGGAAGTGTTTCGAGAGCAAGCACAAGCCT
GGCTGACATCCATGGCCAGTCCTCGGCAACATCGAGTAGTCTGCTATCAG
AGAATGTAGACGTCATGAGCGATTATTCCTCAAAGGAAACATTTAACCAG
ACGAAAATTAATTGTTTGGAGAAGATCATTACAGGATTTATAGACCAACA
GGAAAAAGATGAAATATACATCGCATCCTTGCTGGAAGAGTTGAGTTGCA
AAGTTAACATCATTTCAGAATGTGCTAAGAGGGAAACAAACCTCAAGAGG
AAATACGAACTAGACAAACACTATCTACAACAAAGCTCGGTCTCTACCGA
GAGACAGCTCAATGAAATTATTTTGTCTACACGCTATGAAAGCGATATGA
AGGACAGAGAGATGTTCAATGCTAGAAACAAGTATCAGAACTTGGTCGAG
GCTCTTGTCGAGAAAGACAAACGCTACAAACAAGAGGTCAGCGCTCGAAA
AAGAATTGAGTTGGAATTAGAAGACTCCAAACAAGAGCTCAAGCATGCTT
TTAAGTTCTTGAATAATTTGCACAAAAGTCACACCGAGTTGCAACATGGA
CATAAAGAATTGTTAGGAGAAGCAACAAGAAAgAATGAAGTTGATCCAAA
TTCATTAAGCAACGCATCGGTTGACCAAACGACTCGTGAACACCCtgcca
acaaaaacaaaaaagggcTTTACAGTCCCAGCGAGCCAACAATAGGTCTT
CTACAAATCGATACCATCACTAAAGAATGCGAATCCCAGTGTTCATCCAC
AAACAGACACCCATCGTCTTCATCGACAAGTAAACCAGATGTAGATGAAC
ACAGTGTctacaacaaaaacaaaaaagggaTTTACAGTCCCAGCGAGC
Run BLAST on NCBI

protein sequence of TCONS_00008627-protein

>TCONS_00008627-protein ID=TCONS_00008627-protein|Name=TCONS_00008627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=682bp
VSDDKILESSVASDDKILEPTVASNDKIFKSSVASNDKILEPSVVSDDKI
LESGVTTEDKILESSVTSDDKFFKVSVASDRNVFDDDDVFETAPTSTSSS
NIFLSTSPSMEFLDQTAKGTDSQQREKAVRFSSDIEVLERSSIEECYSKH
PDDNVRSLCNIDVLEKLSTEECFSDLPKATVKSLCNFKNEGVSATAVVTE
SAEKSSAEKPTEEVDTTNNITVSNSDSGQDFVKLYMGSSDHTEPTMDKQK
LDTTTNLITKIELPSIVVTGSEKSENGENALTSQGVSNLITKIELPSIIV
TGPEKSENGENALTSQGVDVVDKTENPSERTDPTVVEISSVLETTPLREH
ETVESETSTETIQHVGDNASDSSGDSLVVIVDSGSKLDIVGSVSRASTSL
ADIHGQSSATSSSLLSENVDVMSDYSSKETFNQTKINCLEKIITGFIDQQ
EKDEIYIASLLEELSCKVNIISECAKRETNLKRKYELDKHYLQQSSVSTE
RQLNEIILSTRYESDMKDREMFNARNKYQNLVEALVEKDKRYKQEVSARK
RIELELEDSKQELKHAFKFLNNLHKSHTELQHGHKELLGEATRKNEVDPN
SLSNASVDQTTREHPANKNKKGLYSPSEPTIGLLQIDTITKECESQCSST
NRHPSSSSTSKPDVDEHSVYNKNKKGIYSPSE
Run BLAST on NCBI

transcript from alignment at sc0000086:564286..567423-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008627 ID=TCONS_00008627|Name=TCONS_00008627|organism=Clytia hemisphaerica|type=transcript|length=3138bp|location=Sequence derived from alignment at sc0000086:564286..567423- (Clytia hemisphaerica)
TGTGAGCGATGATAAAATCCTTGAATCAAGTGTTGCGAGCGATGACAAAA
TTCTTGAACCAACTGTTGCGAGCAATGACAAAATCTTTAAATCAAGTGTT
GCGAGCAATGACAAAATCCTTGAACCAAGTGTTGTGAGCGATGACAAAAT
CCTTGAATCAGGTGTTACGACCGAAGACAAAATCCTTGAATCAAGTGTCA
CAAGCGATGATAAGTTTTTTAAAGTGAGTGTCGCCAGTGATCGCAATGTC
TTTGATGACGATGATGTATTTGAGACAGCTCCGACGTCGACCTCATCATC
AAATATCTTCCTTTCTACGAGTCCATCAATGGAGTTTTTGGATCAAACTG
CCAAGGGAACTGATTCCCAACAACGGGAAAAGGCCGTCAGATTTTCTTCT
GACATCGAGGTGTTAGAGAGATCGTCAATCGAGGAATGTTATTCAAAACA
CCCAGACGATAATGTTAGATCTTTATGTAACATTGATGTCTTGGAGAAAT
TATCAACTGAGGAATGCTTTTCAGATCTTCCCAAGGCTACTGTAAAATCT
TTATGTAATTTTAAAAACGAAGGAGTTTCTGCAACTGCCGTTGTAACTGA
GTCCGCCGAAAAGTCTTCTGCAGAAAAACCGACAGAAGAAGTTGACACGA
CCAACAATATCACTGTATCCAATAGTGATAGTGGACAAGATTTCGTCAAG
CTTTACATGGGGTCTAGCGATCATACCGAACCCACCATGGACAAACAGAA
GCTTGACACTACCACAAATCTGATCACAAAAATCGAATTACCAAGCATTG
TAGTTACTGGCTCCGAGAAAAGTGAAAACGGAGAAAATGCATTGACATCT
CAAGGTGTATCAAATCTGATCACAAAAATCGAATTACCAAGCATAATAGT
TACTGGCCCCGAGAAAAGTGAAAACGGAGAAAATGCATTGACATCTCAAG
GTGTAGATGTAGTTGATAAAACAGAAAATCCTTCCGAGCGAACAGACCCT
ACCGTCGTGGAAATCTCATCAGTCTTGGAAACTACACCACTACGAGAACA
CGAGACAGTTGAGTCAGAAACGTCGACCGAGACAATCCAACACGTTGGAG
ACAATGCTTCTGATAGCAGTGGTGATTCGTTGGTCGTAATTGTCGATTCA
GGTAAAGCTTGTACTTGATTTTTCGAGATCTCTCAACTAACGTGAAAGTT
GTTGGTTTTCTACTTTAGAATACTATTCTTCAATGTCTAAAGCAAGGCAA
TATTCTTAGAAAATGATGTTACTTCATTGTCTGGAATATCAGACAAAACT
TCTAAATTAAAAGAGTAATATTATACATTGATATAATATTTTTATTTTTA
TATATCTTTCAGGTTCTAAATTGGACATAGTGGGAAGTGTTTCGAGAGCA
AGCACAAGCCTGGCTGACATCCATGGCCAGTCCTCGGCAACATCGAGTAG
TCTGCTATCAGAGAATGTAGACGTCATGAGCGATTATTCCTCAAAGGAAA
CATTTAACCAGACGAAAATTAATTGTTTGGAGAAGATCATTACAGGATTT
ATAGACCAACAGGAAAAAGATGAAATATACATCGCATCCTTACTGGAAGA
GTTGAGTTGCAAAGTTAACATCATTTCAGAATGTGCTAAGAGGGAAACAA
ACCTCANACATCGCATCCTTGCTGGAAGAGTTGAGTTGCAAAGTTAACAT
CATTTCAGAATGTGCTAAGAGGGAAACAAACCTCAAGAGGAAATACGAAC
TAGACAAACACTATCTACAACAAAGCTCGGTCTCTACCGAGAGACAGCTC
AATGAAATTATTTTGTCTACACGCTATGAAAGCGATATGAAGGACAGAGA
GATGTTCAATGCTAGAAACAAGTATCAGAACTTGGTCGAGGCTCTTGTCG
AGAAAGACAAACGCTACAAACAAGAGGTATGAAATGTTTTTGACTATAGA
TGTTGGAACATAATTATCATCAACTTAAGCACTCCTTAGTTTGAATTTTT
CTTTGATTTAAACGGATATATTTTCACTTCAACTTCGAATAGTGAATCTA
ACCAAATTTACAAATCTATGTAATATAAGTAATACGAACAAATCTTATCG
GCAACCTGAATGTGCTGGTATGTGCTTTTCATATTGGTCACACGGAAGAT
ACACTATATAATCTTTAAAAATTGATATCTTTTTGCAGGTCAGCGCTCGA
AAAAGAATTGAGTTGGAATTAGAAGACTCCAAACAAGAGCTCAAGCATGC
TTTTAAGTTCTTGAATAATTTGCACAAAAGTCACACCGAGTTGCAACATG
GACATAAAGAATTGTTAGGAGAAGCAACAAGAAAGTAAGTTACAATCTCT
CAAGCTGATGTACGACGTTATTTGAACGTCCATCTAATGTTTTATGTATG
TTACAGAATCTTTCCCCTCGTTTTTTTAAAGACTAATGTACAAGCGACGA
GGTCAAGCAAAAAAGGCATAGAAAATAGATGACAGAAAAATTTCAATTTT
GACTGCAAAATGCCCTTGGAAAAAAGAACCATTCCAAATTTCAAAAATAT
CCTTTTCATGATATAGAAAACAGGCGCGCCTCTTATTCTGAAAAAGTAGA
GTTTACAACAGAAATTTTCAAAAGTAATTCTTTTTTTCGGCTTAAAAATA
CTGTGTGAGCAAATGGGAGGTGATACGTTAAATGATGTACAATATTGAAT
ATATTTTCAGGAATGAAGTTGATCCAAATTCATTAAGCAACGCATCGGTT
GACCAAACGACTCGTGAACACCCTGCCAACAAAAACAAAAAAGGGCTTTA
CAGTCCCAGCGAGCCAACAATAGGTCTTCTACAAATCGATACAAACACTA
AAGGATGCGAATCCCAGTGTTCATCCACAAACAGACACCCATCATCTTCA
TCGACAAGTAAACCAGATGTAGATGAACACAGTGTCTATAGCAAAAACAA
AAAAGGGATTTACAGTCCCAGCGAGCCAACAATAGGTCTTCTACAAATCG
ATACCATCACTAAAGAATGCGAATCCCAGTGTTCATCCACAAACAGACAC
CCATCGTCTTCATCGACAAGTAAACCAGATGTAGATGAACACAGTGTCTA
CAACAAAAACAAAAAAGGGATTTACAGTCCCAGCGAGC

Coding sequence (CDS) from alignment at sc0000086:564286..567423-

>TCONS_00008627 ID=TCONS_00008627|Name=TCONS_00008627|organism=Clytia hemisphaerica|type=CDS|length=2046bp|location=Sequence derived from alignment at sc0000086:564286..567423- (Clytia hemisphaerica)
GTGAGCGATGATAAAATCCTTGAATCAAGTGTTGCGAGCGATGACAAAAT
TCTTGAACCAACTGTTGCGAGCAATGACAAAATCTTTAAATCAAGTGTTG
CGAGCAATGACAAAATCCTTGAACCAAGTGTTGTGAGCGATGACAAAATC
CTTGAATCAGGTGTTACGACCGAAGACAAAATCCTTGAATCAAGTGTCAC
AAGCGATGATAAGTTTTTTAAAGTGAGTGTCGCCAGTGATCGCAATGTCT
TTGATGACGATGATGTATTTGAGACAGCTCCGACGTCGACCTCATCATCA
AATATCTTCCTTTCTACGAGTCCATCAATGGAGTTTTTGGATCAAACTGC
CAAGGGAACTGATTCCCAACAACGGGAAAAGGCCGTCAGATTTTCTTCTG
ACATCGAGGTGTTAGAGAGATCGTCAATCGAGGAATGTTATTCAAAACAC
CCAGACGATAATGTTAGATCTTTATGTAACATTGATGTCTTGGAGAAATT
ATCAACTGAGGAATGCTTTTCAGATCTTCCCAAGGCTACTGTAAAATCTT
TATGTAATTTTAAAAACGAAGGAGTTTCTGCAACTGCCGTTGTAACTGAG
TCCGCCGAAAAGTCTTCTGCAGAAAAACCGACAGAAGAAGTTGACACGAC
CAACAATATCACTGTATCCAATAGTGATAGTGGACAAGATTTCGTCAAGC
TTTACATGGGGTCTAGCGATCATACCGAACCCACCATGGACAAACAGAAG
CTTGACACTACCACAAATCTGATCACAAAAATCGAATTACCAAGCATTGT
AGTTACTGGCTCCGAGAAAAGTGAAAACGGAGAAAATGCATTGACATCTC
AAGGTGTATCAAATCTGATCACAAAAATCGAATTACCAAGCATAATAGTT
ACTGGCCCCGAGAAAAGTGAAAACGGAGAAAATGCATTGACATCTCAAGG
TGTAGATGTAGTTGATAAAACAGAAAATCCTTCCGAGCGAACAGACCCTA
CCGTCGTGGAAATCTCATCAGTCTTGGAAACTACACCACTACGAGAACAC
GAGACAGTTGAGTCAGAAACGTCGACCGAGACAATCCAACACGTTGGAGA
CAATGCTTCTGATAGCAGTGGTGATTCGTTGGTCGTAATTGTCGATTCAG
GTTCTAAATTGGACATAGTGGGAAGTGTTTCGAGAGCAAGCACAAGCCTG
GCTGACATCCATGGCCAGTCCTCGGCAACATCGAGTAGTCTGCTATCAGA
GAATGTAGACGTCATGAGCGATTATTCCTCAAAGGAAACATTTAACCAGA
CGAAAATTAATTGTTTGGAGAAGATCATTACAGGATTTATAGACCAACAG
GAAAAAGATGAAATATACATCGCATCCTTGCTGGAAGAGTTGAGTTGCAA
AGTTAACATCATTTCAGAATGTGCTAAGAGGGAAACAAACCTCAAGAGGA
AATACGAACTAGACAAACACTATCTACAACAAAGCTCGGTCTCTACCGAG
AGACAGCTCAATGAAATTATTTTGTCTACACGCTATGAAAGCGATATGAA
GGACAGAGAGATGTTCAATGCTAGAAACAAGTATCAGAACTTGGTCGAGG
CTCTTGTCGAGAAAGACAAACGCTACAAACAAGAGGTCAGCGCTCGAAAA
AGAATTGAGTTGGAATTAGAAGACTCCAAACAAGAGCTCAAGCATGCTTT
TAAGTTCTTGAATAATTTGCACAAAAGTCACACCGAGTTGCAACATGGAC
ATAAAGAATTGTTAGGAGAAGCAACAAGAAAGAATGAAGTTGATCCAAAT
TCATTAAGCAACGCATCGGTTGACCAAACGACTCGTGAACACCCTGCCAA
CAAAAACAAAAAAGGGCTTTACAGTCCCAGCGAGCCAACAATAGGTCTTC
TACAAATCGATACCATCACTAAAGAATGCGAATCCCAGTGTTCATCCACA
AACAGACACCCATCGTCTTCATCGACAAGTAAACCAGATGTAGATGAACA
CAGTGTCTACAACAAAAACAAAAAAGGGATTTACAGTCCCAGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004827XLOC_004827Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008627-proteinTCONS_00008627-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008627-exon-sc0000086-1575043694:566273..567423TCONS_00008627-exon-sc0000086-1575043694:566273..567423Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1575043694:565844..566061TCONS_00008627-exon-sc0000086-1575043694:565844..566061Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1575043694:565498..565764TCONS_00008627-exon-sc0000086-1575043694:565498..565764Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1575043694:565090..565235TCONS_00008627-exon-sc0000086-1575043694:565090..565235Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1575043694:564601..564713TCONS_00008627-exon-sc0000086-1575043694:564601..564713Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1575043694:564286..564438TCONS_00008627-exon-sc0000086-1575043694:564286..564438Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1510915933:566273..567423TCONS_00008627-exon-sc0000086-1510915933:566273..567423Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1510915933:565844..566061TCONS_00008627-exon-sc0000086-1510915933:565844..566061Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1510915933:565498..565764TCONS_00008627-exon-sc0000086-1510915933:565498..565764Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1510915933:565090..565235TCONS_00008627-exon-sc0000086-1510915933:565090..565235Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1510915933:564601..564713TCONS_00008627-exon-sc0000086-1510915933:564601..564713Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1510915933:564286..564438TCONS_00008627-exon-sc0000086-1510915933:564286..564438Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1491911889:566273..567423TCONS_00008627-exon-sc0000086-1491911889:566273..567423Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1491911889:565844..566061TCONS_00008627-exon-sc0000086-1491911889:565844..566061Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1491911889:565498..565764TCONS_00008627-exon-sc0000086-1491911889:565498..565764Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1491911889:565090..565235TCONS_00008627-exon-sc0000086-1491911889:565090..565235Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1491911889:564601..564713TCONS_00008627-exon-sc0000086-1491911889:564601..564713Clytia hemisphaericaexon
TCONS_00008627-exon-sc0000086-1491911889:564286..564438TCONS_00008627-exon-sc0000086-1491911889:564286..564438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:564286..567423 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0192919	0	0.152903	0.0641106	0	0	0.0248027	0	0	0	0	0.0256966	0	0	0	0	0	0.0148439	0	0	0	0.0272941	0	0	0.227841	0.0554571	0	0	0.0214125	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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