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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008648 ID=TCONS_00008648|Name=TCONS_00008648|organism=Clytia hemisphaerica|type=transcript|length=1540bp
CGTGATTCTAATCAGAGTTTAATATAAAGTGGTAGTAGAAAACTTCTTCC
GTTAAAAGGCCTCGCAAAATACTTGAAATAGTGTACCCacctgacacaca
acgttgttccaacgttcatctaacgttttatGAATGTTGTCGAGACAGCC
TTGTGTGCCGGTGGTTGGGATAAGTACGTCATTATATGAAATACATAAGG
AGTGCAAACTTAGTTGTATAAAAATTTCGTGGTTTAAAATTTATGTAGga
aatttcttcacttttgtaaaaaactttGTCACGACTCCCTTGAAGTTGAC
TAAAACGTTTATCATCAGGGAAAAACTTCGTCAGTTTTCCCGACGCATTT
CgtctttaaaacattttaaacagTAACCGTCTCAGAATGCATGTCTTTCG
TCAATGAAGCATTCCTCTTTTTACAGCACAATTTCAATAGTTCACGTCTT
AAAGATTTCTGTGTTAAAAAGTACATGACGGGGTTGAAAGCACTAACGGC
CCAGGGTACAAACATCATTGCCATGTTTAGAGCTTTGGATTCTAAATAAA
CATTGTTTATCATTTCGTACGTTTGAATACCGAGATAGAAAGACCATCCC
GCTAAAAATGGTAAAGGTGCAATACAACTCCATACAGCTTCGGTTATCCT
CTTTGTTGTGTTCTTTTGTCGCTTAGCAACTTCTTGTTTACCAATCAGAG
TAATGATAAGCGAATCACGTGATTTGATTCCACCAATCAGACGATGTTTT
GTGAAAACAAGAGCGATGAAGATATAACAGAAAGCTGTCACCACAATGGC
GACTAGAAAAGCAACAATGATGGCCAGCCAGAAAACAATAGTGTTATATT
TGAATGACGTTACAGTAAATGCACGTGTCATTGAAAGTCCGAAAAGAACA
AAACAATAACCCCAAACAATTCCGATTCCCGATTTTACGATGATTGAATT
CCGTTTACGATACCATTGTGCGATCCCGATGCTTAACATCCGATCAAATG
CGATCAAAGACACCGACAACATTGATGCCGACGATAAAAACATATCGAGA
GAcggaaacaaaaacattttcaaacgtCCCGACATCGGGAATGTCGGTAA
CAAAATGCTTATGACGAACGCAGCCATGTTTAATAAAACCAATACGTCGG
CGATGACCAAATTAAAAACGCAATACCATGACGGTTTGAAAAATcgtttt
tgtgtgaaaagtaAAAACATCATTCCGCCGTTAGCGATGAATCCGAAAAT
GAAGATTATGACGCTGATTATTAGGATCACACGTCCTTGACTCGTGTCCA
AGCCACTCTTATTAGAATTTGTTGTAGGAACATGTTGTGGTTGATTAGCA
TTTAAATCGTCTACTTGTGAAGTTGGGTTGCAAGTGACGTTAAATAATTG
CTGAATGACTAACGGGTTGAATTCGTCGTTGCAGAATAACAGTCTGATCA
TATTGTGTGTCAAAGTGATATTGCCGTATTGAAAAGTCGCCATTTTTGTT
Tgtcgtgtttttattttttcttctgtcttttttattttcc Run BLAST on NCBI protein sequence of TCONS_00008648-protein >TCONS_00008648-protein ID=TCONS_00008648-protein|Name=TCONS_00008648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
KIKKTEEKIKTRQTKMATFQYGNITLTHNMIRLLFCNDEFNPLVIQQLFN
VTCNPTSQVDDLNANQPQHVPTTNSNKSGLDTSQGRVILIISVIIFIFGF
IANGGMMFLLFTQKRFFKPSWYCVFNLVIADVLVLLNMAAFVISILLPTF
PMSGRLKMFLFPSLDMFLSSASMLSVSLIAFDRMLSIGIAQWYRKRNSII
VKSGIGIVWGYCFVLFGLSMTRAFTVTSFKYNTIVFWLAIIVAFLVAIVV
TAFCYIFIALVFTKHRLIGGIKSRDSLIITLIGKQEVAKRQKNTTKRITE
AVWSCIAPLPFLAGWSFYLGIQTYEMINNVYLESKALNMAMMFVPWAVSA
FNPVMYFLTQKSLRRELLKLCCKKRNASLTKDMHSETVTV Run BLAST on NCBI transcript from alignment at sc0000086:158360..159899 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008648 ID=TCONS_00008648|Name=TCONS_00008648|organism=Clytia hemisphaerica|type=transcript|length=1540bp|location=Sequence derived from alignment at sc0000086:158360..159899 (Clytia hemisphaerica)
ggaaaataaaaaagacagaagaaaaaataaaaacacgacAAACAAAAATG
GCGACTTTTCAATACGGCAATATCACTTTGACACACAATATGATCAGACT
GTTATTCTGCAACGACGAATTCAACCCGTTAGTCATTCAGCAATTATTTA
ACGTCACTTGCAACCCAACTTCACAAGTAGACGATTTAAATGCTAATCAA
CCACAACATGTTCCTACAACAAATTCTAATAAGAGTGGCTTGGACACGAG
TCAAGGACGTGTGATCCTAATAATCAGCGTCATAATCTTCATTTTCGGAT
TCATCGCTAACGGCGGAATGATGTTTTtacttttcacacaaaaacgATTT
TTCAAACCGTCATGGTATTGCGTTTTTAATTTGGTCATCGCCGACGTATT
GGTTTTATTAAACATGGCTGCGTTCGTCATAAGCATTTTGTTACCGACAT
TCCCGATGTCGGGacgtttgaaaatgtttttgtttccgTCTCTCGATATG
TTTTTATCGTCGGCATCAATGTTGTCGGTGTCTTTGATCGCATTTGATCG
GATGTTAAGCATCGGGATCGCACAATGGTATCGTAAACGGAATTCAATCA
TCGTAAAATCGGGAATCGGAATTGTTTGGGGTTATTGTTTTGTTCTTTTC
GGACTTTCAATGACACGTGCATTTACTGTAACGTCATTCAAATATAACAC
TATTGTTTTCTGGCTGGCCATCATTGTTGCTTTTCTAGTCGCCATTGTGG
TGACAGCTTTCTGTTATATCTTCATCGCTCTTGTTTTCACAAAACATCGT
CTGATTGGTGGAATCAAATCACGTGATTCGCTTATCATTACTCTGATTGG
TAAACAAGAAGTTGCTAAGCGACAAAAGAACACAACAAAGAGGATAACCG
AAGCTGTATGGAGTTGTATTGCACCTTTACCATTTTTAGCGGGATGGTCT
TTCTATCTCGGTATTCAAACGTACGAAATGATAAACAATGTTTATTTAGA
ATCCAAAGCTCTAAACATGGCAATGATGTTTGTACCCTGGGCCGTTAGTG
CTTTCAACCCCGTCATGTACTTTTTAACACAGAAATCTTTAAGACGTGAA
CTATTGAAATTGTGCTGTAAAAAGAGGAATGCTTCATTGACGAAAGACAT
GCATTCTGAGACGGTTActgtttaaaatgttttaaagacGAAATGCGTCG
GGAAAACTGACGAAGTTTTTCCCTGATGATAAACGTTTTAGTCAACTTCA
AGGGAGTCGTGACaaagttttttacaaaagtgaagaaatttcCTACATAA
ATTTTAAACCACGAAATTTTTATACAACTAAGTTTGCACTCCTTATGTAT
TTCATATAATGACGTACTTATCCCAACCACCGGCACACAAGGCTGTCTCG
ACAACATTCataaaacgttagatgaacgttggaacaacgttgtgtgtcag
gtGGGTACACTATTTCAAGTATTTTGCGAGGCCTTTTAACGGAAGAAGTT
TTCTACTACCACTTTATATTAAACTCTGATTAGAATCACG Coding sequence (CDS) from alignment at sc0000086:158360..159899 >TCONS_00008648 ID=TCONS_00008648|Name=TCONS_00008648|organism=Clytia hemisphaerica|type=CDS|length=1173bp|location=Sequence derived from alignment at sc0000086:158360..159899 (Clytia hemisphaerica)
aaaataaaaaagacagaagaaaaaataaaaacacgacAAACAAAAATGGC
GACTTTTCAATACGGCAATATCACTTTGACACACAATATGATCAGACTGT
TATTCTGCAACGACGAATTCAACCCGTTAGTCATTCAGCAATTATTTAAC
GTCACTTGCAACCCAACTTCACAAGTAGACGATTTAAATGCTAATCAACC
ACAACATGTTCCTACAACAAATTCTAATAAGAGTGGCTTGGACACGAGTC
AAGGACGTGTGATCCTAATAATCAGCGTCATAATCTTCATTTTCGGATTC
ATCGCTAACGGCGGAATGATGTTTTtacttttcacacaaaaacgATTTTT
CAAACCGTCATGGTATTGCGTTTTTAATTTGGTCATCGCCGACGTATTGG
TTTTATTAAACATGGCTGCGTTCGTCATAAGCATTTTGTTACCGACATTC
CCGATGTCGGGacgtttgaaaatgtttttgtttccgTCTCTCGATATGTT
TTTATCGTCGGCATCAATGTTGTCGGTGTCTTTGATCGCATTTGATCGGA
TGTTAAGCATCGGGATCGCACAATGGTATCGTAAACGGAATTCAATCATC
GTAAAATCGGGAATCGGAATTGTTTGGGGTTATTGTTTTGTTCTTTTCGG
ACTTTCAATGACACGTGCATTTACTGTAACGTCATTCAAATATAACACTA
TTGTTTTCTGGCTGGCCATCATTGTTGCTTTTCTAGTCGCCATTGTGGTG
ACAGCTTTCTGTTATATCTTCATCGCTCTTGTTTTCACAAAACATCGTCT
GATTGGTGGAATCAAATCACGTGATTCGCTTATCATTACTCTGATTGGTA
AACAAGAAGTTGCTAAGCGACAAAAGAACACAACAAAGAGGATAACCGAA
GCTGTATGGAGTTGTATTGCACCTTTACCATTTTTAGCGGGATGGTCTTT
CTATCTCGGTATTCAAACGTACGAAATGATAAACAATGTTTATTTAGAAT
CCAAAGCTCTAAACATGGCAATGATGTTTGTACCCTGGGCCGTTAGTGCT
TTCAACCCCGTCATGTACTTTTTAACACAGAAATCTTTAAGACGTGAACT
ATTGAAATTGTGCTGTAAAAAGAGGAATGCTTCATTGACGAAAGACATGC
ATTCTGAGACGGTTActgtttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008648-exon-sc0000086-1491911889:158360..159899 | TCONS_00008648-exon-sc0000086-1491911889:158360..159899 | Clytia hemisphaerica | exon |
| TCONS_00008648-exon-sc0000086-1510915933:158360..159899 | TCONS_00008648-exon-sc0000086-1510915933:158360..159899 | Clytia hemisphaerica | exon |
| TCONS_00008648-exon-sc0000086-1575043694:158360..159899 | TCONS_00008648-exon-sc0000086-1575043694:158360..159899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:158360..159899 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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