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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008657 ID=TCONS_00008657|Name=TCONS_00008657|organism=Clytia hemisphaerica|type=transcript|length=1462bp
aattaatagaaactttttcaaacaaacgagaagtaaaaacctttcttttt
aataattactTTGAATtcgttttaaaattcgacccttgcagtccttacag
tgcattttgggatgctgaaaaaccccacccttaagcgcgacACACGACGT
AGGcaagatcatatgagtgccccccccagAGAGTTAAAGTTTAATAAATT
AAGTAAGACGATTTAACagagaataaaaataaaaattaatgatcTGTACA
TAGCTTTGAATAAAACACactaaaaacaaattatcttatATATAATTTGG
AATTTCTATGACTGAACATGATCGAAAGCTtaattaataaaaaattaaaa
aaacaaaaaaaattacctaAACTTGATTTAATTTTCATGAGACGCAAttt
caaatttcacaaaatcaaATCTTGCAAAATTGCCTGAGATTTCTGAATAC
CAATTTGATTTAAAGAGAATAAATATAATTCAaaaattgggaaatttttt
AAGTAAAATCGTCATATAAACTATCCATATTTTCATCATCAGTAGATGAG
AGGCTACCAGTATATGTTCTTTTTTCATTGCAACTCACAAAATCTTGCAA
AACATCAGGCTCAGCATCTGAATCAAAACACTCCACTGAAGAAATTGATT
TATTCAGGTCAGACATGTTCGTTGTATCACTTTTTTCACATAATTGAAAG
TTGCAGTCGTCATCACTTGTATCATCAGATTTATTTATATTCACGGCTTG
TTCTTCTCCACTTTCATCTTCTACTTCTGCTTCACTGTCACTTGTATCAC
TGTCACTCACATCGCTCCTTTCcatatcagaaagcgaagaatcatcgtca
tcatcatcatcatcatcatcaattttttctttaattgaATTGTTGATGGT
TAGATATGCATTTTTTACAGTGTCAATATCATTTAGTTTGATTGAAGTAT
TGTCCTCACAGTTTTGAACTCGCTTTTCAAGTGATATCAAATCTTCCGTC
CAAAACTTGGCAAGGCTAGAATAAGGCATTCTGTATGGAGTATCAAGCCA
TAATCTTTATAGCTATAGGattaaattaaaataataattctAAAAGATAA
TTTAACTCAAAATTTACcttaatgatgacgtcatcaacccctTTTCTCTA
TGAATTCCTtatatggtagagaacatttctgccaagtTTTAAGTCCATag
cttttctagatcaaaagttatgcaaggctggtggaaaacacccctcccct
tgagaatacaaaatccgaaaaaggcTGATAATAATTAATAGGGTTAACGA
GTGTTGAATCGATATTGACaaatttaatgatgtcataatctaTGCCGTGT
ACATTTTGTCAGCGCTGTGCATATTTtatcaacatccttttcattggata
aatacaactaaaatatacaaaataagTAAACATGAATTTATTGTCTGCGA
GCACggttagct Run BLAST on NCBI protein sequence of TCONS_00008657-protein >TCONS_00008657-protein ID=TCONS_00008657-protein|Name=TCONS_00008657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MPYSSLAKFWTEDLISLEKRVQNCEDNTSIKLNDIDTVKNAYLTINNSIK
EKIDDDDDDDDDDSSLSDMERSDVSDSDTSDSEAEVEDESGEEQAVNINK
SDDTSDDDCNFQLCEKSDTTNMSDLNKSISSVECFDSDAEPDVLQDFVSC
NEKRTYTGSLSSTDDENMDSLYDDFT Run BLAST on NCBI transcript from alignment at sc0000086:388753..390214 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008657 ID=TCONS_00008657|Name=TCONS_00008657|organism=Clytia hemisphaerica|type=transcript|length=1462bp|location=Sequence derived from alignment at sc0000086:388753..390214 (Clytia hemisphaerica)
agctaaccGTGCTCGCAGACAATAAATTCATGTTTActtattttgtatat
tttagttgtatttatccaatgaaaaggatgttgataAAATATGCACAGCG
CTGACAAAATGTACACGGCAtagattatgacatcattaaatttGTCAATA
TCGATTCAACACTCGTTAACCCTATTAATTATTATCAgcctttttcggat
tttgtattctcaaggggaggggtgttttccaccagccttgcataactttt
gatctagaaaagctATGGACTTAAAacttggcagaaatgttctctaccat
ataAGGAATTCATAGAGAAAaggggttgatgacgtcatcattaagGTAAA
TTTTGAGTTAAATTATCTTTTagaattattattttaatttaatCCTATAG
CTATAAAGATTATGGCTTGATACTCCATACAGAATGCCTTATTCTAGCCT
TGCCAAGTTTTGGACGGAAGATTTGATATCACTTGAAAAGCGAGTTCAAA
ACTGTGAGGACAATACTTCAATCAAACTAAATGATATTGACACTGTAAAA
AATGCATATCTAACCATCAACAATtcaattaaagaaaaaattgatgatga
tgatgatgatgatgacgatgattcttcgctttctgatatgGAAAGGAGCG
ATGTGAGTGACAGTGATACAAGTGACAGTGAAGCAGAAGTAGAAGATGAA
AGTGGAGAAGAACAAGCCGTGAATATAAATAAATCTGATGATACAAGTGA
TGACGACTGCAACTTTCAATTATGTGAAAAAAGTGATACAACGAACATGT
CTGACCTGAATAAATCAATTTCTTCAGTGGAGTGTTTTGATTCAGATGCT
GAGCCTGATGTTTTGCAAGATTTTGTGAGTTGCAATGAAAAAAGAACATA
TACTGGTAGCCTCTCATCTACTGATGATGAAAATATGGATAGTTTATATG
ACGATTTTACTTaaaaaatttcccaattttTGAATTATATTTATTCTCTT
TAAATCAAATTGGTATTCAGAAATCTCAGGCAATTTTGCAAGATttgatt
ttgtgaaatttgaaaTTGCGTCTCATGAAAATTAAATCAAGTTtaggtaa
ttttttttgtttttttaattttttattaattaAGCTTTCGATCATGTTCA
GTCATAGAAATTCCAAATTATATataagataatttgtttttagtGTGTTT
TATTCAAAGCTATGTACAgatcattaatttttatttttattctctGTTAA
ATCGTCTTACTTAATTTATTAAACTTTAACTCTctggggggggcactcat
atgatcttgCCTACGTCGTGTgtcgcgcttaagggtggggtttttcagca
tcccaaaatgcactgtaaggactgcaagggtcgaattttaaaacgaATTC
AAagtaattattaaaaagaaaggtttttacttctcgtttgtttgaaaaag
tttctattaatt Coding sequence (CDS) from alignment at sc0000086:388753..390214 >TCONS_00008657 ID=TCONS_00008657|Name=TCONS_00008657|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at sc0000086:388753..390214 (Clytia hemisphaerica)
ATGCCTTATTCTAGCCTTGCCAAGTTTTGGACGGAAGATTTGATATCACT
TGAAAAGCGAGTTCAAAACTGTGAGGACAATACTTCAATCAAACTAAATG
ATATTGACACTGTAAAAAATGCATATCTAACCATCAACAATtcaattaaa
gaaaaaattgatgatgatgatgatgatgatgacgatgattcttcgctttc
tgatatgGAAAGGAGCGATGTGAGTGACAGTGATACAAGTGACAGTGAAG
CAGAAGTAGAAGATGAAAGTGGAGAAGAACAAGCCGTGAATATAAATAAA
TCTGATGATACAAGTGATGACGACTGCAACTTTCAATTATGTGAAAAAAG
TGATACAACGAACATGTCTGACCTGAATAAATCAATTTCTTCAGTGGAGT
GTTTTGATTCAGATGCTGAGCCTGATGTTTTGCAAGATTTTGTGAGTTGC
AATGAAAAAAGAACATATACTGGTAGCCTCTCATCTACTGATGATGAAAA
TATGGATAGTTTATATGACGATTTTACTTaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008657-exon-sc0000086-1491911889:388753..390214 | TCONS_00008657-exon-sc0000086-1491911889:388753..390214 | Clytia hemisphaerica | exon |
| TCONS_00008657-exon-sc0000086-1510915933:388753..390214 | TCONS_00008657-exon-sc0000086-1510915933:388753..390214 | Clytia hemisphaerica | exon |
| TCONS_00008657-exon-sc0000086-1575043694:388753..390214 | TCONS_00008657-exon-sc0000086-1575043694:388753..390214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:388753..390214 . |
Blast
The following BLAST results are available for this feature:
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