TCONS_00008666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008666
Unique NameTCONS_00008666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008666 ID=TCONS_00008666|Name=TCONS_00008666|organism=Clytia hemisphaerica|type=transcript|length=417bp
GTTTCGACAACCAAGTTTCAGTTATACCtaaaaatatttgattgtcaGTG
TGTAGAATGTCACGTAGGTATGGAACTGATGACGGTTTTGTTTGTGGGCA
CNGTTTTTGTGTTTAGAATTTACTTCTTTAAGGTGGCATTTTCGTCCGAG
TCTCTGGTTTTCGTAGCAGGTGATACCCCCTTTGTTCTCAGAGTGGTTGA
AATTTGGAGAATATCTCTCTAAGATATACCAAGTATAGTTATAGatgatt
tgatatctttctctACGTCTTTCCAGACTGTatagttttagagttttaag
tttttcccAATAGTTCAGTCATACCCACATCTAAAGTGATCCCAAGGTCT
TTGACTGTAGTCTTGGTCTCTATCACCTTTTGGGTATCAGAGAAGTATTT
GGAGAGTTCTTTAAGTT
Run BLAST on NCBI

transcript from alignment at sc0000086:574563..574979

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008666 ID=TCONS_00008666|Name=TCONS_00008666|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at sc0000086:574563..574979 (Clytia hemisphaerica)
AACTTAAAGAACTCTCCAAATACTTCTCTGATACCCAAAAGGTGATAGAG
ACCAAGACTACAGTCAAAGACCTTGGGATCACTTTAGATGTGGGTATGAC
TGAACTATTgggaaaaacttaaaactctaaaactatACAGTCTGGAAAGA
CGTagagaaagatatcaaatcatCTATAACTATACTTGGTATATCTTAGA
GAGATATTCTCCAAATTTCAACCACTCTGAGAACAAAGGGGGTATCACCT
GCTACGAAAACCAGAGACTCGGACGAAAATGCCACCTTAAAGAAGTAAAT
TCTAAACACAAAAACNGTGCCCACAAACAAAACCGTCATCAGTTCCATAC
CTACGTGACATTCTACACACtgacaatcaaatatttttaGGTATAACTGA
AACTTGGTTGTCGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004866XLOC_004866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008666-exon-sc0000086-1491911889:574563..574979TCONS_00008666-exon-sc0000086-1491911889:574563..574979Clytia hemisphaericaexon
TCONS_00008666-exon-sc0000086-1510915933:574563..574979TCONS_00008666-exon-sc0000086-1510915933:574563..574979Clytia hemisphaericaexon
TCONS_00008666-exon-sc0000086-1575043694:574563..574979TCONS_00008666-exon-sc0000086-1575043694:574563..574979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:574563..574979 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0242	1.37835	1.71056	3.29188	6.14336	2.25439	2.2292	6.11374	0.809997	0.673675	1.43864	1.11636	1.35383	0	0.656857	1.45902	0.323185	0.482032	1.28854	0.650791	2.29327	0	0	0.305027	1.38016	1.71208	1.72166	1.139	0.778693	0.43947
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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