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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008670 ID=TCONS_00008670|Name=TCONS_00008670|organism=Clytia hemisphaerica|type=transcript|length=909bp
GCAAAGTGAAATAGAAAAGGTTTATAACAGAAAAAGTTTTCCTCTCAAAA
TAACTCACTCTACAAGCTGCCATGGAAACATAGCTGGTTAACCCTTTCAT
TCATAACGTTCTAACGAACAATGAtctatgtttttttaatttaaaaccAA
AGCAatggaaaactttgaaattgtACCATATGACATTCCAAAACATGGCG
ATGAAGTTCAGAGACTTTATGACGAATACATTGCCTCTGAATGCTGTAAA
AGGATGGGTATACGCTTAGAAGAAAGACATCAATTCTCTCATATCGAGGA
CGTTTTGACTGTGGACAATGTTTTTGATGAGAAGTTCACTGGTTATTCAT
TTGTTGTGATCGACAGCTCTGGTAAAGTCAAAGGTGCTCAGTTATCTTAC
CTTATAGATAAAGCTACTTTTAAGAAAGACTTCATTGATGTGAACAAAGA
CATTGTGAACGAGAAACAATAtccggaaaatattttgaagtattGCCAAC
ATCGTTATGAAGTATCGAAATGCATTTATAATCTTTACGACGAATATAAT
TTTGAGCGAGCAGTTTATTTAGAATCTACCGTTGTTGATAAAGATGCTCG
CGGTTTTGGTCTCAACTTGCAGACTACCGTAGCTTTAGCTAACTTTACAA
ATGAAGTCATTTTGGTTGAAGGCCAATTACCTATCAATTTTTATATGAAA
CATCCGATTCATGCGACTATCCCGATCGGGCAACTGACTTTCCATCCGGG
TTTCACGCTGGTGAATCGGATTTTGTCGTATGATTTGTACGTTGTTCCGA
TTGAAATACGGTTACAAAGGGACATTATAATATCATCCAAATTGTAACTA
TTGATATTAAATAATATTGCATACACATACAtaagaaaaaattgtttttt
tgatttttt Run BLAST on NCBI protein sequence of TCONS_00008670-protein >TCONS_00008670-protein ID=TCONS_00008670-protein|Name=TCONS_00008670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MENFEIVPYDIPKHGDEVQRLYDEYIASECCKRMGIRLEERHQFSHIEDV
LTVDNVFDEKFTGYSFVVIDSSGKVKGAQLSYLIDKATFKKDFIDVNKDI
VNEKQYPENILKYCQHRYEVSKCIYNLYDEYNFERAVYLESTVVDKDARG
FGLNLQTTVALANFTNEVILVEGQLPINFYMKHPIHATIPIGQLTFHPGF
TLVNRILSYDLYVVPIEIRLQRDIIISSKL Run BLAST on NCBI transcript from alignment at sc0000086:597957..598865 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008670 ID=TCONS_00008670|Name=TCONS_00008670|organism=Clytia hemisphaerica|type=transcript|length=909bp|location=Sequence derived from alignment at sc0000086:597957..598865 (Clytia hemisphaerica)
aaaaaatcaaaaaaacaattttttcttaTGTATGTGTATGCAATATTATT
TAATATCAATAGTTACAATTTGGATGATATTATAATGTCCCTTTGTAACC
GTATTTCAATCGGAACAACGTACAAATCATACGACAAAATCCGATTCACC
AGCGTGAAACCCGGATGGAAAGTCAGTTGCCCGATCGGGATAGTCGCATG
AATCGGATGTTTCATATAAAAATTGATAGGTAATTGGCCTTCAACCAAAA
TGACTTCATTTGTAAAGTTAGCTAAAGCTACGGTAGTCTGCAAGTTGAGA
CCAAAACCGCGAGCATCTTTATCAACAACGGTAGATTCTAAATAAACTGC
TCGCTCAAAATTATATTCGTCGTAAAGATTATAAATGCATTTCGATACTT
CATAACGATGTTGGCaatacttcaaaatattttccggaTATTGTTTCTCG
TTCACAATGTCTTTGTTCACATCAATGAAGTCTTTCTTAAAAGTAGCTTT
ATCTATAAGGTAAGATAACTGAGCACCTTTGACTTTACCAGAGCTGTCGA
TCACAACAAATGAATAACCAGTGAACTTCTCATCAAAAACATTGTCCACA
GTCAAAACGTCCTCGATATGAGAGAATTGATGTCTTTCTTCTAAGCGTAT
ACCCATCCTTTTACAGCATTCAGAGGCAATGTATTCGTCATAAAGTCTCT
GAACTTCATCGCCATGTTTTGGAATGTCATATGGTacaatttcaaagttt
tccatTGCTTTggttttaaattaaaaaaacatagaTCATTGTTCGTTAGA
ACGTTATGAATGAAAGGGTTAACCAGCTATGTTTCCATGGCAGCTTGTAG
AGTGAGTTATTTTGAGAGGAAAACTTTTTCTGTTATAAACCTTTTCTATT
TCACTTTGC Coding sequence (CDS) from alignment at sc0000086:597957..598865 >TCONS_00008670 ID=TCONS_00008670|Name=TCONS_00008670|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0000086:597957..598865 (Clytia hemisphaerica)
TTACAATTTGGATGATATTATAATGTCCCTTTGTAACCGTATTTCAATCG
GAACAACGTACAAATCATACGACAAAATCCGATTCACCAGCGTGAAACCC
GGATGGAAAGTCAGTTGCCCGATCGGGATAGTCGCATGAATCGGATGTTT
CATATAAAAATTGATAGGTAATTGGCCTTCAACCAAAATGACTTCATTTG
TAAAGTTAGCTAAAGCTACGGTAGTCTGCAAGTTGAGACCAAAACCGCGA
GCATCTTTATCAACAACGGTAGATTCTAAATAAACTGCTCGCTCAAAATT
ATATTCGTCGTAAAGATTATAAATGCATTTCGATACTTCATAACGATGTT
GGCaatacttcaaaatattttccggaTATTGTTTCTCGTTCACAATGTCT
TTGTTCACATCAATGAAGTCTTTCTTAAAAGTAGCTTTATCTATAAGGTA
AGATAACTGAGCACCTTTGACTTTACCAGAGCTGTCGATCACAACAAATG
AATAACCAGTGAACTTCTCATCAAAAACATTGTCCACAGTCAAAACGTCC
TCGATATGAGAGAATTGATGTCTTTCTTCTAAGCGTATACCCATCCTTTT
ACAGCATTCAGAGGCAATGTATTCGTCATAAAGTCTCTGAACTTCATCGC
CATGTTTTGGAATGTCATATGGTacaatttcaaagttttccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008670-exon-sc0000086-1491911889:597957..598865 | TCONS_00008670-exon-sc0000086-1491911889:597957..598865 | Clytia hemisphaerica | exon |
| TCONS_00008670-exon-sc0000086-1510915933:597957..598865 | TCONS_00008670-exon-sc0000086-1510915933:597957..598865 | Clytia hemisphaerica | exon |
| TCONS_00008670-exon-sc0000086-1575043694:597957..598865 | TCONS_00008670-exon-sc0000086-1575043694:597957..598865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:597957..598865 . |
Blast
The following BLAST results are available for this feature:
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