|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008677 ID=TCONS_00008677|Name=TCONS_00008677|organism=Clytia hemisphaerica|type=transcript|length=1604bp
taCTGAAATACacatgaaaattacaaaactgcataAAAAAGCCTAAATGC
AAAGATTACAAATTTGCTAATAACAAGTAACAAAGAAAtgtttatgtttt
gaaaaaattataaatttataCAAAGGAATTAACAATGCTCTCTAATATAA
AGGTGGCATGCATATAAACTTTAATACCTCTCACACTGACGTGCGAACCA
CTgaacattaaaaatattttgtttacaaataACAAATGTACACGAAAAAA
AACTAATTCTTGCACAAATCATCATTTATATGCTCGAACAGTTCCTCGCC
AGTCACAAAAGTCTTAGCGTTCACATGACGGGAGCAAAAGAACCATTGAA
GTACTTCATTCGATAAGAAATATCGGTAATAAAAATCTTGCCTTTCCATA
AAGTCTCGACAAAAATACTCACCACTGAAAATATGGATGTAAACATGgct
tttgttctttttcttgcGTGACCGGTAAAGGCCTCCCCATCCAAGCCCAA
AGGGAGGGGGACGGTATTGTGACCGGTGGAGGGGATGGTTATCCCATTTA
AACTTACTAAAAGTCAAATGCCCGTCAGATGATGACATTATGCCTCGAAA
TGTGTCAGAAAAATGGATTTCTAGTGGTTCTTGGTTTACTTTCGAACGAT
GGGCGTTTACTTTTTTTAAGATAGCCGACGCTATTGGAATATAAGTAAAT
CTCACTCGATAAATAGTGACGAATATCTTTCGAACCTCCTTCATACAATC
ATCagtgaaaagatttttcttagACATGATCCAACGATACGTCATATCGT
AAACATCGTAGTCCGGATTTTTTATGACATCGAACAGTGTCTTAATGACC
GGGTGTTGCAAAGAAACACCAACCATAAGCCCAACCTGTGTTTGGATATT
TCGATTCAATGGAAGCCAATCTATTCGTTTAAAATAAGTGTCTATTCTGA
AAAGAATAATTGTCCATTGTCTCTCGTTCTGTAATAGCTCAAGACTTTTG
AGAATATCATCGAAATCAGCATACTTGATATGTTCTATGGTAAGGACAAG
AGTTTGTTTAATGTTTACATCATTTCCCATGATCTTATCATCGTAAATCT
GCTTCATCAGTTCGGCGATTTTACGCTTTTCGTTCTTGATTCGAGAGGAA
CTATCACGAAATTTGTTTGTTCGAAATTTaaattgattgatattgttgtt
ATTTCTCCATCTCACTATGTCAAAACCGTTGAAGTAGTTCACCATAAAAC
ATGCTTCGTTATCAAGCAAATCGTTCAATTCTTGCACGAAGAAACGGTAA
CCAAAAGTATAATAGTAAACACTCTTTTCCTCGTTAATGCTAATGAAGGT
GACATTCCTGAACTCGGAACAACTTAACATTGAAAAGTCCTGGAAATTCT
GCACAACACCATTTGAAGCAGTAAAATAAACACATGCTGATAGAACGAAT
AACTGGATTACAAGAAACATGTTTGTCCTCTTCTTATTTTGCCTTTCAAA
CGTCTTCAGTGTCGATATTTTATTACTGCAATAAATCTGACTTAAAGCTG
ATTGTATGTCCTCCTATGAAAATGCATATTTAAAAGAATACCACATTATA
TGAG Run BLAST on NCBI protein sequence of TCONS_00008677-protein >TCONS_00008677-protein ID=TCONS_00008677-protein|Name=TCONS_00008677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MFLVIQLFVLSACVYFTASNGVVQNFQDFSMLSCSEFRNVTFISINEEKS
VYYYTFGYRFFVQELNDLLDNEACFMVNYFNGFDIVRWRNNNNINQFKFR
TNKFRDSSSRIKNEKRKIAELMKQIYDDKIMGNDVNIKQTLVLTIEHIKY
ADFDDILKSLELLQNERQWTIILFRIDTYFKRIDWLPLNRNIQTQVGLMV
GVSLQHPVIKTLFDVIKNPDYDVYDMTYRWIMSKKNLFTDDCMKEVRKIF
VTIYRVRFTYIPIASAILKKVNAHRSKVNQEPLEIHFSDTFRGIMSSSDG
HLTFSKFKWDNHPLHRSQYRPPPFGLGWGGLYRSRKKKNKSHVYIHIFSG
EYFCRDFMERQDFYYRYFLSNEVLQWFFCSRHVNAKTFVTGEELFEHIND
DLCKN Run BLAST on NCBI transcript from alignment at sc0000086:709782..711385 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008677 ID=TCONS_00008677|Name=TCONS_00008677|organism=Clytia hemisphaerica|type=transcript|length=1604bp|location=Sequence derived from alignment at sc0000086:709782..711385 (Clytia hemisphaerica)
CTCATATAATGTGGTATTCTTTTAAATATGCATTTTCATAGGAGGACATA
CAATCAGCTTTAAGTCAGATTTATTGCAGTAATAAAATATCGACACTGAA
GACGTTTGAAAGGCAAAATAAGAAGAGGACAAACATGTTTCTTGTAATCC
AGTTATTCGTTCTATCAGCATGTGTTTATTTTACTGCTTCAAATGGTGTT
GTGCAGAATTTCCAGGACTTTTCAATGTTAAGTTGTTCCGAGTTCAGGAA
TGTCACCTTCATTAGCATTAACGAGGAAAAGAGTGTTTACTATTATACTT
TTGGTTACCGTTTCTTCGTGCAAGAATTGAACGATTTGCTTGATAACGAA
GCATGTTTTATGGTGAACTACTTCAACGGTTTTGACATAGTGAGATGGAG
AAATaacaacaatatcaatcaatttAAATTTCGAACAAACAAATTTCGTG
ATAGTTCCTCTCGAATCAAGAACGAAAAGCGTAAAATCGCCGAACTGATG
AAGCAGATTTACGATGATAAGATCATGGGAAATGATGTAAACATTAAACA
AACTCTTGTCCTTACCATAGAACATATCAAGTATGCTGATTTCGATGATA
TTCTCAAAAGTCTTGAGCTATTACAGAACGAGAGACAATGGACAATTATT
CTTTTCAGAATAGACACTTATTTTAAACGAATAGATTGGCTTCCATTGAA
TCGAAATATCCAAACACAGGTTGGGCTTATGGTTGGTGTTTCTTTGCAAC
ACCCGGTCATTAAGACACTGTTCGATGTCATAAAAAATCCGGACTACGAT
GTTTACGATATGACGTATCGTTGGATCATGTctaagaaaaatcttttcac
tGATGATTGTATGAAGGAGGTTCGAAAGATATTCGTCACTATTTATCGAG
TGAGATTTACTTATATTCCAATAGCGTCGGCTATCTTAAAAAAAGTAAAC
GCCCATCGTTCGAAAGTAAACCAAGAACCACTAGAAATCCATTTTTCTGA
CACATTTCGAGGCATAATGTCATCATCTGACGGGCATTTGACTTTTAGTA
AGTTTAAATGGGATAACCATCCCCTCCACCGGTCACAATACCGTCCCCCT
CCCTTTGGGCTTGGATGGGGAGGCCTTTACCGGTCACgcaagaaaaagaa
caaaagcCATGTTTACATCCATATTTTCAGTGGTGAGTATTTTTGTCGAG
ACTTTATGGAAAGGCAAGATTTTTATTACCGATATTTCTTATCGAATGAA
GTACTTCAATGGTTCTTTTGCTCCCGTCATGTGAACGCTAAGACTTTTGT
GACTGGCGAGGAACTGTTCGAGCATATAAATGATGATTTGTGCAAGAATT
AGTTTTTTTTCGTGTACATTTGTtatttgtaaacaaaatatttttaatgt
tcAGTGGTTCGCACGTCAGTGTGAGAGGTATTAAAGTTTATATGCATGCC
ACCTTTATATTAGAGAGCATTGTTAATTCCTTTGtataaatttataattt
tttcaaaacataaacaTTTCTTTGTTACTTGTTATTAGCAAATTTGTAAT
CTTTGCATTTAGGCTTTTTtatgcagttttgtaattttcatgtGTATTTC
AGta Coding sequence (CDS) from alignment at sc0000086:709782..711385 >TCONS_00008677 ID=TCONS_00008677|Name=TCONS_00008677|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at sc0000086:709782..711385 (Clytia hemisphaerica)
ATGTTTCTTGTAATCCAGTTATTCGTTCTATCAGCATGTGTTTATTTTAC
TGCTTCAAATGGTGTTGTGCAGAATTTCCAGGACTTTTCAATGTTAAGTT
GTTCCGAGTTCAGGAATGTCACCTTCATTAGCATTAACGAGGAAAAGAGT
GTTTACTATTATACTTTTGGTTACCGTTTCTTCGTGCAAGAATTGAACGA
TTTGCTTGATAACGAAGCATGTTTTATGGTGAACTACTTCAACGGTTTTG
ACATAGTGAGATGGAGAAATaacaacaatatcaatcaatttAAATTTCGA
ACAAACAAATTTCGTGATAGTTCCTCTCGAATCAAGAACGAAAAGCGTAA
AATCGCCGAACTGATGAAGCAGATTTACGATGATAAGATCATGGGAAATG
ATGTAAACATTAAACAAACTCTTGTCCTTACCATAGAACATATCAAGTAT
GCTGATTTCGATGATATTCTCAAAAGTCTTGAGCTATTACAGAACGAGAG
ACAATGGACAATTATTCTTTTCAGAATAGACACTTATTTTAAACGAATAG
ATTGGCTTCCATTGAATCGAAATATCCAAACACAGGTTGGGCTTATGGTT
GGTGTTTCTTTGCAACACCCGGTCATTAAGACACTGTTCGATGTCATAAA
AAATCCGGACTACGATGTTTACGATATGACGTATCGTTGGATCATGTcta
agaaaaatcttttcactGATGATTGTATGAAGGAGGTTCGAAAGATATTC
GTCACTATTTATCGAGTGAGATTTACTTATATTCCAATAGCGTCGGCTAT
CTTAAAAAAAGTAAACGCCCATCGTTCGAAAGTAAACCAAGAACCACTAG
AAATCCATTTTTCTGACACATTTCGAGGCATAATGTCATCATCTGACGGG
CATTTGACTTTTAGTAAGTTTAAATGGGATAACCATCCCCTCCACCGGTC
ACAATACCGTCCCCCTCCCTTTGGGCTTGGATGGGGAGGCCTTTACCGGT
CACgcaagaaaaagaacaaaagcCATGTTTACATCCATATTTTCAGTGGT
GAGTATTTTTGTCGAGACTTTATGGAAAGGCAAGATTTTTATTACCGATA
TTTCTTATCGAATGAAGTACTTCAATGGTTCTTTTGCTCCCGTCATGTGA
ACGCTAAGACTTTTGTGACTGGCGAGGAACTGTTCGAGCATATAAATGAT
GATTTGTGCAAGAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008677-exon-sc0000086-1491911889:709782..711385 | TCONS_00008677-exon-sc0000086-1491911889:709782..711385 | Clytia hemisphaerica | exon |
| TCONS_00008677-exon-sc0000086-1510915933:709782..711385 | TCONS_00008677-exon-sc0000086-1510915933:709782..711385 | Clytia hemisphaerica | exon |
| TCONS_00008677-exon-sc0000086-1575043694:709782..711385 | TCONS_00008677-exon-sc0000086-1575043694:709782..711385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:709782..711385 . |
Blast
The following BLAST results are available for this feature:
|
