TCONS_00008678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008678
Unique NameTCONS_00008678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008678 ID=TCONS_00008678|Name=TCONS_00008678|organism=Clytia hemisphaerica|type=transcript|length=404bp
cttggaaattcatacattttcttctctcgccttgaaattttgaatttagg
tGAAAAACTTTTACCCTCAGAAATCCCATGTCGTCCGCctccctgttaca
gacaaattctggaacgGCCCATTTGTATCAAAGGCAGAACACACGGATTT
TATCAAGTTACGAACGGAACGGAGGAGAATACACATCATCATGTCTGACA
CTCTGCTGGGCTGGCTACGAGAGGCATGAATTCTGGAACCAAAATaggaa
atcaaaacaaaattgaccTGGAAGTTAAAGCAACAAATCAAaccttttat
caaaaaaacaaacttagAGAGCAAACAATCCAAGAGTGCCATTAGCATAA
TAAGTGTACAAgcgtttttttcttcactttttgcgGGTAAAAATGAAATG
CAAA
Run BLAST on NCBI

transcript from alignment at sc0000086:757434..757837

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008678 ID=TCONS_00008678|Name=TCONS_00008678|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0000086:757434..757837 (Clytia hemisphaerica)
TTTGCATTTCATTTTTACCcgcaaaaagtgaagaaaaaaacgcTTGTACA
CTTATTATGCTAATGGCACTCTTGGATTGTTTGCTCTctaagtttgtttt
tttgataaaaggtTTGATTTGTTGCTTTAACTTCCAggtcaattttgttt
tgatttcctATTTTGGTTCCAGAATTCATGCCTCTCGTAGCCAGCCCAGC
AGAGTGTCAGACATGATGATGTGTATTCTCCTCCGTTCCGTTCGTAACTT
GATAAAATCCGTGTGTTCTGCCTTTGATACAAATGGGCcgttccagaatt
tgtctgtaacagggagGCGGACGACATGGGATTTCTGAGGGTAAAAGTTT
TTCacctaaattcaaaatttcaaggcgagagaagaaaatgtatgaatttc
caag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004878XLOC_004878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008678-exon-sc0000086-1491911889:757434..757837TCONS_00008678-exon-sc0000086-1491911889:757434..757837Clytia hemisphaericaexon
TCONS_00008678-exon-sc0000086-1510915933:757434..757837TCONS_00008678-exon-sc0000086-1510915933:757434..757837Clytia hemisphaericaexon
TCONS_00008678-exon-sc0000086-1575043694:757434..757837TCONS_00008678-exon-sc0000086-1575043694:757434..757837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:757434..757837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191861	0.177417	0.852826	0.403075	0.245352	0.387762	0.233909	0.218983	0.61326	0.569716	0	0.363507	0.484003	1.00528	0.41324	0.443469	0.283885	0.279979	0.193403	0.202383	0.527721	0	0.417211	0.189653	0.195338	0.523003	0.498944	0	0.201936	0.822963
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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