TCONS_00008680 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008680
Unique NameTCONS_00008680
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008680 ID=TCONS_00008680|Name=TCONS_00008680|organism=Clytia hemisphaerica|type=transcript|length=339bp
cttttttccaaattgtttgtCAAAAAGATTACAAATCTGTGCGcaaaaga
ataaaaatgaaTACTCTACCCTGAAACCTGAAATAAAGTGCTACTGTGTT
TGTAAAATATACAAATAAAATGTCAGCTCAGACGGGTTTTCGTTATTATC
GTTGAAAAAGGCACCTCTGCAGAAAAATGGGTTAAAAAGTTTGTTACATC
AATGATTAACGATCGGTAACTGTACGATCGGCGTacaactacatgttttt
tttttataagcaagtgtatgccccttggtcaggctcgtgtatgcttaagt
tctcaaagcatccaggcatagtttatgcttattatatgc
Run BLAST on NCBI

transcript from alignment at sc0000086:807237..807575

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008680 ID=TCONS_00008680|Name=TCONS_00008680|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at sc0000086:807237..807575 (Clytia hemisphaerica)
gcatataataagcataaactatgcctggatgctttgagaacttaagcata
cacgagcctgaccaaggggcatacacttgcttataaaaaaaaaacatgta
gttgtACGCCGATCGTACAGTTACCGATCGTTAATCATTGATGTAACAAA
CTTTTTAACCCATTTTTCTGCAGAGGTGCCTTTTTCAACGATAATAACGA
AAACCCGTCTGAGCTGACATTTTATTTGTATATTTTACAAACACAGTAGC
ACTTTATTTCAGGTTTCAGGGTAGAGTAttcatttttattcttttgCGCA
CAGATTTGTAATCTTTTTGacaaacaatttggaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004880XLOC_004880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008680-exon-sc0000086-1491911889:807237..807575TCONS_00008680-exon-sc0000086-1491911889:807237..807575Clytia hemisphaericaexon
TCONS_00008680-exon-sc0000086-1510915933:807237..807575TCONS_00008680-exon-sc0000086-1510915933:807237..807575Clytia hemisphaericaexon
TCONS_00008680-exon-sc0000086-1575043694:807237..807575TCONS_00008680-exon-sc0000086-1575043694:807237..807575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:807237..807575 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.051088	0	8.65668	6.16322	1.00618	0.427108	0.831148	0.787096	1.26445	0	2.51154	0.993772	0.248502	0	0.32595	0.260394	0.670137	0.641433	1.74079	1.24237	2.88757	4.56717	1.00591	2.38317	0	0	0.827763	0	0.846407	0.973653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top