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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008681 ID=TCONS_00008681|Name=TCONS_00008681|organism=Clytia hemisphaerica|type=transcript|length=1740bp
gtagcttatgccccaagggtcccaaaaaaacaaaaaacgtcaattatttc
caagggaaagtgggtttttaaatttgcgaaagatttgcactgcaacgact
tcttcacaaaaacgctaatttttacactcttcccctgaccactttcgctt
tcgttttcaaccacccatcCATCCAGCCAAACAATTGGTCACGTAACTTC
TCGAActcccatctcaaaaatccattaTGGCCCCCCTCACGGCTCACTca
cattagacttttagtatatagattactccagaaatttttatttcacaATA
TGgcccttttttattttggtgacTAGGGCTTTCAGTGCTTTGCACAACGA
GTGGCTGTAAAATGTCACCCTTCAAAACGTCACATAGTGTGCAgcggggt
ctgatccccccatTTATATTTCATTATAAGCTGAGTTGTAAGGAAATTGT
ATTACATTGTCTGTAAGGCAGCTAATTTTCATTGATCTTTCAGTGAGCTT
TTACAAAGTACATTAAAAGTTTGGGATTGTAATCATCAATTTTTCTAGGT
ATTCAAAAGATTTGTAGAAAGATTGATTTTACATCCAATATTGAAATGAA
CAATGGATATTTATCTAGTTCTTTTTTACCTCATCATTGCATTTGCATTT
ATCAGTTTTTTGGCTTGTATTGTCTCATGTTGTCGCATGTATGATTGTTT
CTGTGGTGTATTTGAACGTGTTGGGATGACATGTGGATGTATTGAGCGTG
ATTATGCATATTATGAAGACCCTGGGTGTTGCTATAGAAGACATGGGTCA
GTAGGTCAAACAATGTTTGATGGCTGTCGTGTAGTACCTTATGAACCTGA
TAAAGTTGTCGTTCACCTATGTTGTCGTAAAAATGAAGCAGCATGTTTGA
ATCCCACATGCACAATTTGTTTGGATGATTTCATTATGGGAGAAAATGTT
ATTTTGTGCCCCTGTGGACATTGCTATCATAAGAAATGTTTGAAAAGTTG
GTTACGTGTAAAAAATGTTTGCCCATTGTGTAAGATTTCTATTGGGCGAC
GAGCACTTCTAACAGAACGATCTTCATTGTTACCACCTGTTTAGAATACT
TACTTTTCCCAACTGGCACGAGACGTCAAACAATGTTCATTCAGTGTTAT
AATATTTTAGTTATTACATTTAGTAACTGTGTTTATTCATGAATAAAATT
ATTAGAAAggtttttcttacattttgattgatttttgtgaaaattaagtg
attaaaattaaaattgatgtttCTAGAATGCAAAAAATTCATTATCAGGA
ACTTTTTTCCTGCGATGAGTAAACCTTTGATAATTTACAATGCATCATTG
TTCATTTCCTTTGAAACACTCAAATAAAGTCAAAGTTAAAGTATTATATT
TTGTGTATtaacttattttttttatttttttagagcattgaaattttatt
gattatgttttagttctttttttACCTAACAATAAACTGTACATTAACCA
GATTAAAATATTTGTAGATTAGAAAAGATTATTATTTGGTATAAAGTGTA
AAATATTAGATGGTAAAGCTGGGTAAAgggctttttgaaaaattatgtgC
AATTCAAAACGGCCAGAATTTCCAAATCATGATGATTAGCGTTTTAATGA
AATTGATCCACCATGTTCTAATAGAGCTATttgtaaataataaataattt
tgtATTGAATGATAAGATAATTAGCGACTTCGAATCCATA Run BLAST on NCBI protein sequence of TCONS_00008681-protein >TCONS_00008681-protein ID=TCONS_00008681-protein|Name=TCONS_00008681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MDIYLVLFYLIIAFAFISFLACIVSCCRMYDCFCGVFERVGMTCGCIERD
YAYYEDPGCCYRRHGSVGQTMFDGCRVVPYEPDKVVVHLCCRKNEAACLN
PTCTICLDDFIMGENVILCPCGHCYHKKCLKSWLRVKNVCPLCKISIGRR
ALLTERSSLLPPV Run BLAST on NCBI transcript from alignment at sc0000086:818734..820473 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008681 ID=TCONS_00008681|Name=TCONS_00008681|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0000086:818734..820473 (Clytia hemisphaerica)
TATGGATTCGAAGTCGCTAATTATCTTATCATTCAATacaaaattattta
ttatttacaaATAGCTCTATTAGAACATGGTGGATCAATTTCATTAAAAC
GCTAATCATCATGATTTGGAAATTCTGGCCGTTTTGAATTGcacataatt
tttcaaaaagcccTTTACCCAGCTTTACCATCTAATATTTTACACTTTAT
ACCAAATAATAATCTTTTCTAATCTACAAATATTTTAATCTGGTTAATGT
ACAGTTTATTGTTAGGTaaaaaaagaactaaaacataatcaataaaattt
caatgctctaaaaaaataaaaaaaataagttaATACACAAAATATAATAC
TTTAACTTTGACTTTATTTGAGTGTTTCAAAGGAAATGAACAATGATGCA
TTGTAAATTATCAAAGGTTTACTCATCGCAGGAAAAAAGTTCCTGATAAT
GAATTTTTTGCATTCTAGaaacatcaattttaattttaatcacttaattt
tcacaaaaatcaatcaaaatgtaagaaaaaccTTTCTAATAATTTTATTC
ATGAATAAACACAGTTACTAAATGTAATAACTAAAATATTATAACACTGA
ATGAACATTGTTTGACGTCTCGTGCCAGTTGGGAAAAGTAAGTATTCTAA
ACAGGTGGTAACAATGAAGATCGTTCTGTTAGAAGTGCTCGTCGCCCAAT
AGAAATCTTACACAATGGGCAAACATTTTTTACACGTAACCAACTTTTCA
AACATTTCTTATGATAGCAATGTCCACAGGGGCACAAAATAACATTTTCT
CCCATAATGAAATCATCCAAACAAATTGTGCATGTGGGATTCAAACATGC
TGCTTCATTTTTACGACAACATAGGTGAACGACAACTTTATCAGGTTCAT
AAGGTACTACACGACAGCCATCAAACATTGTTTGACCTACTGACCCATGT
CTTCTATAGCAACACCCAGGGTCTTCATAATATGCATAATCACGCTCAAT
ACATCCACATGTCATCCCAACACGTTCAAATACACCACAGAAACAATCAT
ACATGCGACAACATGAGACAATACAAGCCAAAAAACTGATAAATGCAAAT
GCAATGATGAGGTAAAAAAGAACTAGATAAATATCCATTGTTCATTTCAA
TATTGGATGTAAAATCAATCTTTCTACAAATCTTTTGAATACCTAGAAAA
ATTGATGATTACAATCCCAAACTTTTAATGTACTTTGTAAAAGCTCACTG
AAAGATCAATGAAAATTAGCTGCCTTACAGACAATGTAATACAATTTCCT
TACAACTCAGCTTATAATGAAATATAAatggggggatcagaccccgcTGC
ACACTATGTGACGTTTTGAAGGGTGACATTTTACAGCCACTCGTTGTGCA
AAGCACTGAAAGCCCTAgtcaccaaaataaaaaagggcCATATtgtgaaa
taaaaatttctggagtaatctatatactaaaagtctaatgtgAGTGAGCC
GTGAGGGGGGCCAtaatggatttttgagatgggagTTCGAGAAGTTACGT
GACCAATTGTTTGGCTGGATGgatgggtggttgaaaacgaaagcgaaagt
ggtcaggggaagagtgtaaaaattagcgtttttgtgaagaagtcgttgca
gtgcaaatctttcgcaaatttaaaaacccactttcccttggaaataattg
acgttttttgtttttttgggacccttggggcataagctac Coding sequence (CDS) from alignment at sc0000086:818734..820473 >TCONS_00008681 ID=TCONS_00008681|Name=TCONS_00008681|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0000086:818734..820473 (Clytia hemisphaerica)
CTAAACAGGTGGTAACAATGAAGATCGTTCTGTTAGAAGTGCTCGTCGCC
CAATAGAAATCTTACACAATGGGCAAACATTTTTTACACGTAACCAACTT
TTCAAACATTTCTTATGATAGCAATGTCCACAGGGGCACAAAATAACATT
TTCTCCCATAATGAAATCATCCAAACAAATTGTGCATGTGGGATTCAAAC
ATGCTGCTTCATTTTTACGACAACATAGGTGAACGACAACTTTATCAGGT
TCATAAGGTACTACACGACAGCCATCAAACATTGTTTGACCTACTGACCC
ATGTCTTCTATAGCAACACCCAGGGTCTTCATAATATGCATAATCACGCT
CAATACATCCACATGTCATCCCAACACGTTCAAATACACCACAGAAACAA
TCATACATGCGACAACATGAGACAATACAAGCCAAAAAACTGATAAATGC
AAATGCAATGATGAGGTAAAAAAGAACTAGATAAATATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008681-exon-sc0000086-1491911889:818734..820473 | TCONS_00008681-exon-sc0000086-1491911889:818734..820473 | Clytia hemisphaerica | exon |
| TCONS_00008681-exon-sc0000086-1510915933:818734..820473 | TCONS_00008681-exon-sc0000086-1510915933:818734..820473 | Clytia hemisphaerica | exon |
| TCONS_00008681-exon-sc0000086-1575043694:818734..820473 | TCONS_00008681-exon-sc0000086-1575043694:818734..820473 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:818734..820473 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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