TCONS_00008682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008682
Unique NameTCONS_00008682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008682 ID=TCONS_00008682|Name=TCONS_00008682|organism=Clytia hemisphaerica|type=transcript|length=625bp
Ntgagtaagaaagtgccaaaatatcttgagactgtctactaagggactaa
tatggaaatatggcaatatgaatttgggagatatcgaaatatgttgtaca
cattagttcttatgaaaaacttccttgtcatcaatattttaaacaaccat
attataccattcacaaataaaaagttacttaaaaatAGATCTCCTTCTTT
ACAGATTTAGATTTCCAGTGCATAACATCTGTTACAGTAGTATTCATGTG
ATAATATACAAATTGTCAACCTTGGAATTGTCACATTTAGTTACAGTATT
GCTAAATATTTACAACACTTTCCAGCAAACTTTTTTGTGAAATTTGTGTC
TTGATAAACTAAACTCCATGACATTTGTATCATTGATCATTAAATCACAT
CTTGGAACAATAGAGTTCCTTGGTTCAATTATTGCAAGAATGTTAATCTT
CGTTCATATTCTCATTATGTGCAACATCATCATTACATCATTGCCAGCAA
GTTACAttgtattgtcagctttagaggtcgtcaaactttgttgaatttgt
aatccaggcacctgaatgtgaaaggaaagaaaaattcaaaatttcataat
gggaaataatctctttacAGTAATT
Run BLAST on NCBI

transcript from alignment at sc0000086:832008..832632

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008682 ID=TCONS_00008682|Name=TCONS_00008682|organism=Clytia hemisphaerica|type=transcript|length=625bp|location=Sequence derived from alignment at sc0000086:832008..832632 (Clytia hemisphaerica)
AATTACTgtaaagagattatttcccattatgaaattttgaatttttcttt
cctttcacattcaggtgcctggattacaaattcaacaaagtttgacgacc
tctaaagctgacaatacaaTGTAACTTGCTGGCAATGATGTAATGATGAT
GTTGCACATAATGAGAATATGAACGAAGATTAACATTCTTGCAATAATTG
AACCAAGGAACTCTATTGTTCCAAGATGTGATTTAATGATCAATGATACA
AATGTCATGGAGTTTAGTTTATCAAGACACAAATTTCACAAAAAAGTTTG
CTGGAAAGTGTTGTAAATATTTAGCAATACTGTAACTAAATGTGACAATT
CCAAGGTTGACAATTTGTATATTATCACATGAATACTACTGTAACAGATG
TTATGCACTGGAAATCTAAATCTGTAAAGAAGGAGATCTatttttaagta
actttttatttgtgaatggtataatatggttgtttaaaatattgatgaca
aggaagtttttcataagaactaatgtgtacaacatatttcgatatctccc
aaattcatattgccatatttccatattagtcccttagtagacagtctcaa
gatattttggcactttcttactcaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004882XLOC_004882Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008682-exon-sc0000086-1491911889:832008..832632TCONS_00008682-exon-sc0000086-1491911889:832008..832632Clytia hemisphaericaexon
TCONS_00008682-exon-sc0000086-1510915933:832008..832632TCONS_00008682-exon-sc0000086-1510915933:832008..832632Clytia hemisphaericaexon
TCONS_00008682-exon-sc0000086-1575043694:832008..832632TCONS_00008682-exon-sc0000086-1575043694:832008..832632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:832008..832632 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.2272	13.4726	8.98025	9.25813	37.7229	17.8128	29.1655	21.8641	9.34263	13.0857	13.2197	13.2339	15.0873	14.8436	10.8475	14.0836	10.0514	13.1896	20.126	19.2154	32.0756	33.0603	25.5216	29.5147	8.14925	14.2191	63.0306	54.6631	61.3381	55.1643
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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