TCONS_00008694 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008694
Unique Name	TCONS_00008694
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2524

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000087:40321..47244+

transcript sequence

>TCONS_00008694 ID=TCONS_00008694|Name=TCONS_00008694|organism=Clytia hemisphaerica|type=transcript|length=2524bp
attcTTGTTGTATTTTTGTTACTCATTTTACCTTTTTCAGTTTGTCTCCA
AAACGCATTACTTCTTCAGTGTGAGCAAagacaaaacattgaaatattgG
GATgctgataaatttgaaaatattatgaCTCTAAAGGGACATCATTTGGA
AATTTGGGCAATGGCAGTCAGTCCAAGCGGTGAATATGTGGTCACAAGCT
CACACGATAAATCTATTCGACTTTGGCAACGTACTGAAGAACTGTTAGTC
ATTTCAGAAGAGAGAGAACAGgaACGGGAAGAATTAAACGAAGCTAGTAT
AACAGAACGCGGTGAACAAGCGATTCCAGGGGAGACTTCAGAGGAAGTTG
GACATGCTGGCAAAAAGACCATAGAAACTGTCAAAGCGGCTGAACGGATC
ATGGAAGCCATTGAAATTTGGAAAGAAGAAACGGCAAAATCAAAAGTGGA
CACAGCAACAGAACCACACCCAATTTTAAAAGCTTATGGAAATGTCGAGC
CACGACGTTATGTTTTGGATGTTTTGAAGAAAGTCAAATCTAGcgaGTTA
GAAGAATCGTTACTTGTGCTACCATTTACATACGTTACAGATCTATTGAA
ACTGATTAATCATTGGATGTCGAACCTATGGGAAGTTGAATTATCATCCA
GGTGTCTTACGTTTCTGCTGAAGATTCATCACAATCAGATCACGAGCACA
CAAGTGTTATTACCAGTAATGAGTTCACTCAATAGTTCATCTCTCCAAGC
TGTCCAACAACTTAAGGATCAAGTTGGTTTTAATCGTGCTGGGTTACGTT
TCCTACAGCTACAACTGGAAATGAAAAACGTCAATTTCTTTGATGACGCA
TACGACAAATTCAAGAAGAAAGCAAAAACGAAAAAGATTGtcgctttttg
atttttaactagAAAGTAGCGTGGATTACTGAAAGTCAACGTACAGAAAT
TCACGCAAAACTGAAATCAGGAATAATACAAAAACAAGTCGTGGATAATT
TTTGATCGACCCGTTGAAATAATGTTTGTTAATATCATCAAGATTTTGTT
ATTATGTGACATTTGTACGTTGATTTATGCTGCTTGGCGTTTTGATGTTC
ATGTTGATAGGTTAGAAAACGACGAGAGAGCAGACTTTGATCCTAAACCA
AGTTCTTTGGTACAAAACCGTGGCGTTAGAACGGTGAGCCATTTACCCAA
TATTTATTGTGCACCACGGAAAACAGTTGTTAGGGTTGACGTGCCGTTAC
AACATTATTCGCCCATGATGGTTGAAGTGAACCGATGTGCGGGGGTAGCT
GATAACGTCAATCCGCAACTTAAAGACTGCGTTAAAAGTTCATCCGAAAA
GATTCGTTTTCCAGTTCGCTCCAAACTGAATCCGACGTATTCGTCTTATA
AGGAAGTTGAAAATCATTTATCGTGTAAAGGGAGATGTAAATATGACGCT
ACACAGTGTAAAGGGGCTTCGAAATGGGATGAAAAACAATGCAAATGTAT
TTGTCCGTCCAATCAGTATTGTCCACCACATTACTCTTGGAATCCGATCA
AATGCGCATGCACATGTTCTCGCCGTTGTCATAAACGTCAAATCTTGGAC
CTTGAAGATTGTACTTGTATGTGTAAAGCGAAATTCTTTAAACGATGTTC
TAAACGAGGTCACGGCGAACCAAGTCCGATAGACTGCCAGTGTATGGGAA
AGCCTCTTTCCAGGGCGTCATGTCAACCCTGTAGATGTCGAAAATCGGTA
CCGGAGAGCTTTCTACTGCAGTAccttttcacaaaaaagaaacaataatt
ttgatgaaaagattTTGTAATGTAAATATAAGTAGCTTTCTTCAGTGTAG
ATTTTTgcgttttttaattttatttaactatttttcaacattttaatgAA
TGAAGTGATCAATTATATTTTGTAGAATATCTTGCTAATTTTATATAGGG
CTTTTTCAGGTTCGGCTATTTACCCGGTAATACcaatatctcaaagaaaa
acaaaatcctTTCCAATTCATGATAATcttatgatgtaatcttttcgtTG
ATTGACACTCCGAATCGAAATATTTGGCCGCCATTATTGATGGCAAAACA
AATGCGTTCCCCAATGTTTTCCAAGCAAGGACCCccggaaaaaaataaga
aaagattaaTACATAAGCCTAAATACtctaaattaaagaaaaaactcttt
cattgaaattctttaattatctgcaatagatttccaaaagatatttaatt
ctaTTATATTACGTCAAAAGATATTAAGCTTTCTTTTTCGTAAACCCCCg
gtttcaatacaaaataggttagcgggacaaatttttgCCACTAATAATGG
CGGCAAAGTTGTTACGTCACATCTATTGTTTGAGTATACCACAGATTTTG
ACTTATTTACCGGATTCTCCGGCGGCATCCCGCTGTTTACCGTTGTATCT
TCTATTATTTTTCCTGTatctattgtttaaaatgaaccgccgccgccgcc
ggtaatacACGAATACCGGCGGAA

Run BLAST on NCBI

transcript from alignment at sc0000087:40321..47244+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008694 ID=TCONS_00008694|Name=TCONS_00008694|organism=Clytia hemisphaerica|type=transcript|length=6924bp|location=Sequence derived from alignment at sc0000087:40321..47244+ (Clytia hemisphaerica)
attcTTGTTGTATTTTTGTTACTCATTTTACCTTTTTCAGTTTGTCTCCA
AAACGCATTACTTCTTCAGTGTGAGCAAagacaaaacattgaaatattgG
GATgctgataaatttgaaaatattatgaCTCTAAAGGTTTGTTTTTGATA
GACTTCTTTATGAGGTTCCTATAAAGAGGTTTGTTCAGTTAACGCTCCTT
CAAAATTTACAGTTTTTTCGATGCCCATAGAATTTTATCCTAGTACGAGA
ATTTTTAGAAATGATACAATTTATATGTTAAGATGAATCAAttcaaatta
cgaattttttTCTCAGGGACATCATTTGGAAATTTGGGCAATGGCAGTCA
GTCCAAGCGGTGAATATGTGGTAAGGAGAAACTTACCGTTAGTTGACAAA
TCTATAAACCCTAATTTAATCTCATATTGATGCCAATTAAAAATTGACAA
CATCGCATATCTATCATActtatgataaaaatatttaccgACCTGGAATT
CAGAAATCACGCCGAGAGTCAATGTATCAACCACCGGCATAACAAAAGCA
AAACAAAGCCTTGTTCGATAAATTCATAACAACCTTTCGTTCTGTATTGT
CCAGGTCACAAGCTCACACGATAAATCTATTCGACTTTGGCAACGTACTG
AAGAACTGTTAGTCATTTCAGAAGAGAGAGAACAGGTTCGCTCACACACT
GGTATTTatgataaaatctaaaaaaaacgaCCCTTAGTCGAATGACGTCA
AATGTAACCTTTGCAGCATGGGTTGATAATATTACCGATAcgttgttttc
ctttttttaggaACGGGAAGAATTAAACGAAGCTAGTATAACAGAACGCG
GTGAACAAGCGGTAAGATCCTAGTGGTCTTTTTTTCGCTCTTTGCaccat
aaaaagtaaaaattatcCTTTTGATCCCATCGTCATCATTTGGTTATTTT
TGATATTCATACTTTGATATACTTCAGTTCGATTCCTTTTATATACCTTT
CTCCATAAACCTGCTAAATAATTAAAACACGATTTCTTTATCATAACGAC
CAActgaaatctttttcttttcacttcTAGATTCCAGGGGAGACTTCAGA
GGAAGTTGGACATGCTGGCAAAAAGACCATAGAAACTGTCAAAGCGGTAA
GCACTTAGGTTGTCAATACATTGTTTCAAATTTGCATAGTTCAAATCTTT
TGCCCCAAATTTTATTCATAGTGCGAGATGTTTCATTATCTCTTAAATTA
GATAGAGTGCCTTTTATGATAATCTCCAGCTAATGACGGACAACATTTAC
TTTAACATTAGGCTGAACGGATCATGGAAGCCATTGAAATTTGGAAAGAA
GAAACGGCAAAATCAAAAGTGGTAGGATATTTATGGAATCAATATCTGAG
GGCTGATCAATCGTGGacttttaatagttattttACTTGACCCTTTTAAT
TTTATTAAATGACTTATTAATTTCGTACAGGACACAGCAACAGAACCACA
CCCAATTTTAAAAGCTTATGGAAATGTCGAGGTAAACATGCATGACTGCT
GTTGCTATTTTCCTTCTATTTTTGAGGATATTATCACTTTACTTGTTCAA
CTATGCTAGGGAAGGCTCGTGCAAAAGATTGCTTGAAAGTTTTGAGTTAA
TGTGTCTGAATAAGAAGGACTTTGCTTGAAGATTTCACTTTGATTGATTC
TTTTGGAATCTGTATGCAAGCTGGATACAATTTTGTTACCGTTAGAATGA
AATTTGCGAAGAACAATCTTTTAATAATTGTAAATCTTACACTCTTCTCG
ATCTTATTTTTCAGCCACGACGTTATGTTTTGGATGTTTTGAAGAAAGTC
AAATCTAGGTAGAAgtcgaaaaaatgaaatttttatgaAGATTTCATAAA
ACTTTTTCTGTGGGCTCAATAACTCGAGCATTTGGGAAATGAAAAAACCG
CCTGTTCCTACCCATCTAGGAGCAATAATGGGAtttgaacaaaacttttt
acaacGAATGAGATAATTGAATTTGTTATTGTTAATATAAGTCTATAATT
TACTAAAAGATTTAGGAATTGTTTCCCCTAAAATTTCACTcgattccttt
ttttcttttagcgaGTTAGAAGAATCGTTACTTGTGCTACCATTTACATA
CGTTACAGATCTATTGAAACTGATTAATCATTGGATGTCGGTAAGGCTCT
ATGTAAATTTTGTTCTTtactgtttacatttttatcGTCGATTTCTCAAC
GTAACTCGAGAAAATAATGGCCCCCTACtttacaaaatgtttttgtaaat
tGCAATCGTATAAGTTTGCTTTATACTTGTTTATTGAAGATTTCTGCGAA
AGAGAACTTCTGAGAAAAACCTGCATCGATCCATCTGTCATTGGTTTCTC
AGAATCCTTGAAGTTGACAGAGTGTCATCCTTATGTCATGAACGGTGTGT
TATTGTGATTACAGCTGCTTAATCGAGTATTTTGTCCTAAGTTTGACCTA
ATAGAGATTCGtgaattaaaaataaagaaaacaaatcAGACTTTTTTTAC
GCAAACGTTTTTCTTTCGGTTACATAATGTTAAATAATTCATGTTTTGGT
CACTATTCAAAACCCCCCTTTTACGTGCTGGTAATCNCGGTTACATAATG
TTAAATAATTCATGTTTTGGTCACCATAACGTGCTGGTAATTAATAACAT
TCACAATGGAGACAAGATGGTACACATGAATACGTGATTTTCTCTCGTCA
AAATACACGTCAACATGATACGtgttttctttgatttcgaaattttaaac
tatttttaCGAAAATTAAAATACATCTCAACCAATTCACAGAGATCCTCC
TACAAAAAGATAATCAAATGACCTGCCTTTATCATACGTTTACACTTGTG
ATGGAATGATTGACACTTAGAAAGCTTCCTTTTTCAAGTAAAATGCAGAC
CCAAAAACATATATTATACTGTATTTTTTTCTCTCCATTATAGAACCTAT
GGGAAGTTGAATTATCATCCAGGTGTCTTACGTTTCTGCTGAAGTAAGCA
ATTTCCTTCTTTTTCAAACGGGATTAAAACTACACTAAGACAAAATGACG
TCAACATAATaaaaattggttgaaagttGAGAAGTACTTTCAGCAGGCTT
CTGTTTGCCGATTGTTTGGAAGCGAAAGTAATATAGTAAAGACTAAATCC
TCTGAACAAAAATCTTGTTAGGTCTTGTTACTTGATTAACGTTTTTAAGG
GATCATTACAGATGCCTGTAGATCTACTCTAAATTGCTGAGCAAATCTTA
GTACTCTTTCTCAAAGTCAAGAAATTTGAATTCCCTAAGATGGGGAATTA
GTCCGGTCAAAAGATTTGGAGGGTTTGCTCAGGACCATATACACCAAAAT
ATTCCAAACAATCTAATTAAACACGAAGCTCTGGTTATCTTTGTTCCACT
TGTAGGATTCATCACAATCAGATCACGAGCACACAAGTGTTATTACCAGT
AATGAGTTCACTCAATAGTTCATCTCTCCAAGCTGTCCAACAACTTAAGG
TTTATACatgattttatttgattttcctgTATGCTTTTCTCCCTGGCAAA
GTTATTTATCAAAACATAGGCATCTTAAAATGATTTAATAAATAATCTAG
TTAGGCTTTGTTTTCTCTAATGAGGAAAGTAAACTGAGCCTTAATTTGTT
TATTGGTtcatatttaatatttttattacaAGTTTCGTTGTGTTTTTAGC
AGTGACATCACTCTAAGATTTTGAACATTTTATACTCGTGACATTTCATT
AATGTTTACAAACCATAGCTTTTGCATTCTATCTATCTAAATTGAAAACC
TCCTTTGAAATAGTAAACTTATCCGTAATACAAATTCACTTTCAAGGACA
TCTTAAAATAAAGACGATCTACACTAATCCTTTGGTGCAATATTTGTATC
AGTTACATAAAGCGcataagaaaatttttcctCACTTAAATATGATCACA
TGAGCTTAAACATGTCTCTCAGTATAATGTCTGCACCCAAACCCTAATAC
ACTTTCtataaacttccaatataatACACCCTCTTGAAGATAGTTACTGA
AACGATGAAAGTATTCaaatatacagttgacgctgtCTAATTctatcttc
aaggggaattggattttcatcaaataagggagcttatcgaattagggaac
gtcgtttatgagagtttcttgttgacggggactttaaatttcatcgaata
agggagcctatcgaatagtagaatgtcgaataagagagcgtcaactgtat
acaGTAATCAATATTATCgctagaaatttgaaaattggctCTGTTTACAA
GAGTTTTGGCCCCCAAAAGTATTATTCTATAACTCTTGATATCTTTTGTT
TATTGACATTTAGGATCAAGTTGGTTTTAATCGTGCTGGGTTACGTTTCC
TACAGCTACAACTGGAAATGAAAAACGTCAATTTCTTTGATGACGCATAC
GACAAATTCAAGAAGAAAGCAAAAACGAAAAAGATTGtcgctttttgatt
tttaactagAAAGGTACCTAGCTTTTTTTTTGCTCCTAATagttttataa
atatttttagatattttttggtaaaaagaaatttttaaaggtATCTCTAC
CACATACcgttcattttgattttgaaagtaatttttctatCCTCTTATTT
TTGGTATCAGTTCCAAAGCGACAAAGACTTTCCAttatgaacatattttt
gaataGTATAATAAGAAATCTAGACGAAATACTTcctattttcatttata
aatgGGCTTGACGTTGTGTAAAGGCTGATATTTCTAACCGCACACGCTAG
CTTATAAAAGTTCTTTTTATGTAAAACCCGTCTATTTTCTTAGCCAAAAC
TTCTGTCTTTCCGAACTACAAGCTCTAGCCTGCCCTCTTCAAAATCTAAT
TTTGTAGGACATTCATATATAAGTCGATGGTTCGATATTTGACACCTTGC
TTCCGTTGATACACTTACACAAAATCCTAAAGAAATAGCAACACTTTACA
ATGTTGTTAGTTATCAAAACAGAGCTCTAACGAACATTTGAAGTGTTATT
GAAAATTTGCCAATTACGCATTTATTGTCTTTGTGGTATCTTTATATCTC
AATATTTTGTCCTATGAGAGATTGACTGACTgacttgattttcttctttc
tctttttgCTTGAATcgacattttcaaaacattgtgATATATGAGGAGAC
AGTAATAAAGTTGGTCGCATCGAATGACAAACTATGATAATCTGTGTGTT
TTTTAAACTATATTAGTAGCGTGGATTACTGAAAGTCAACGTACAGAAAT
TCACGCAAAACTGAAATCAGGAATAATACAAAAACAAGTCGTGGATAATT
TTTGATCGACCCGTTGAAATAATGTTTGTTAATATCATCAAGATTTTGTT
ATTATGTGACATTTGTACGTTGATTTATGCTGCTTGGCGTTTTGATGTTC
ATGTTGATAGGTTAGAAAACGACGAGAGAGCAGACTTTGATCCTAAACCA
AGTTCTTTGGTACAAAACCGTGGCGTTAGAACGGTGAGCCATTTACCCAA
TATTTATTGTGCACCACGGAAAACAGTTGTTAGGGTTGACGTGCCGTTAC
AACATTATTCGCCCATGATGGTTGAAGTGAACCGATGTGCGGGGGTAGCT
GATAACGTCAATCCGCAACTTAAAGACTGCGTTAAAAGTTCATCCGAAAA
GATTCGTTTTCCAGTTCGCTCCAAACTGAATCCGACGTATTCGTCTTATA
AGGAAGTTGAAAATCATTTATCGTGTAAAGGGAGATGTAAATATGACGCT
ACACAGTGTAAAGGGGCTTCGAAATGGGATGAAAAACAATGCAAATGTAT
TTGTCCGTCCAATCAGTATTGTCCACCACATTACTCTTGGAATCCGATCA
AATGCGCATGCACATGTTCTCGCCGTTGTCATAAACGTCAAATCTTGGAC
CTTGAAGATTGTACTTGTATGTGTAAAGCGAAATTCTTTAAACGATGTTC
TAAACGAGGTCACGGCGAACCAAGTCCGATAGACTGCCAGTGTATGGGAA
AGCCTCTTTCCAGGGCGTCATGTCAACCCTGTAGATGTCGAAAATCGGTA
CCGGAGAGCTTTCTACTGCAGTAccttttcacaaaaaagaaacaataatt
ttgatgaaaagattTTGTAATGTAAATATAAGTAGCTTTCTTCAGTGTAG
ATTTTTgcgttttttaattttatttaactatttttcaacattttaatgAA
TGAAGTGATCAATTATATTTTGTAGAATATCTTGCTAATTTTATATAGGG
CTTTTTCAGGTTCGGCTATTTACCCGGTAATACcaatatctcaaagaaaa
acaaaatcctTTCCAATTCATGATAATcttatgatgtaatcttttcgtTG
ATTGACACTCCGAATCGAAATATTTGGCCGCCATTATTGATGGCAAAACA
AATGCGTTCCCCAATGTTTTCCAAGCAAGGACCCccggaaaaaaataaga
aaagattaaTACATAAGCCTAAATACtctaaattaaagaaaaaactcttt
cattgaaattctttaattatctgcaatagatttccaaaagatatttaatt
ctaTTATATTACGTCAAAAGATATTAAGCTTTCTTTTTCGTAAACCCCCg
gtttcaatacaaaataggttagcgggacaaatttttgCCACTAATAATGG
CGGCAAAGTTGTTACGTCACATCTATTGTTTGAGTATACCACAGATTTTG
ACTTATTTACCGGATTCTCCGGCGGCATCCCGCTGTTTACCGTTGTATCT
TCTATTATTTTTCCTGTatctattgtttaaaatgaaccgccgccgccgcc
ggtaatacACGAATACCGGCGGAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004886	XLOC_004886	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000087	supercontig	sc0000087:40321..47244 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.851113	0.759312	1.49986	1.56287	13.6892	11.2145	16.5375	16.5037	13.9142	14.3623	16.6844	12.1957	16.4373	17.1103	19.62	21.358	12.4175	14.8069	4.51139	4.49672	14.411	14.7433	14.7689	16.8722	19.1727	19.4422	6.23663	5.99657	14.6079	13.312

Blast

[Close]

BLAST of TCONS_00008694 vs. Swiss-Prot (Human)
Match: WDR3 (WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 9.332e-72
Identity = 150/272 (55.15%), Postives = 195/272 (71.69%), Query Frame = 2

Query:   44 VSKTHYFFSVSKDKTLKYWDADKFENIMTLKGHHLEIWAMAVSPSGEYVVTSSHDKSIRLWQRTEELLVISXXXXXXXXXLNEASITERGEQAIPGETSEEVGHAGKKTIETVKAAERIMEAIEIWKEETAKSKVDTAT----------EPHPILKAYGNVEPRRYVLDXXXXXXXXXXXXXXXXXPFTYVTDLLKLINHWMSNLWEVELSSRCLTFLLKIHHNQITSTQVLLPVMSSLNSSSLQAVQQLKDQVGFNRAGLRFLQLQLEMKN 829
            V K+H FF+  KD  +K WDADKFE+I TL+GHH EIW +AVSPSG+YVV+SSHDKS+RLW+RT E L++ EERE ERE   E S+ +  + A+PGET  +    GKKTIETVKAAERIMEAIE+++EETAK K   A             +PIL AYG++ P  YVL++ K +KSSELEESLLVLPF+YV D+LKL N ++    +VEL  RCL FLL+IH  QITS Q+L+PV+  L  +++  V Q++D +GFN AGL +L+ + E K+
Sbjct:  642 VPKSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSSSHDKSLRLWERTREPLILEEEREMEREAEYEESVAKEDQPAVPGETQGDSYFTGKKTIETVKAAERIMEAIELYREETAKMKEHKAICKAAGKEVPLPSNPILMAYGSISPSAYVLEIFKGIKSSELEESLLVLPFSYVPDILKLFNEFIQLGSDVELICRCLFFLLRIHFGQITSNQMLVPVIEKLRETTISKVSQVRDVIGFNMAGLDYLKRECEAKS 913

The following BLAST results are available for this feature:

BLAST of TCONS_00008694 vs. Swiss-Prot (Human)

BLAST of TCONS_00008694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR3	9.332e-72	55.15	WD repeat-containing protein 3 OS=Homo sapiens GN=...	[more]

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TCONS_00008694 (transcript) - C. hemisphaerica