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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008696 ID=TCONS_00008696|Name=TCONS_00008696|organism=Clytia hemisphaerica|type=transcript|length=1858bp
AAACAGAGCTCTAACGAACATTTGAAGTGTTATTGAAAATTTGCCAATTA
CGCATTTATTGTCTTTGTGGTATCTTTATATCTCAATATTTTGTCCTATG
AGAGATTGACTGACTgacttgattttcttctttctctttttgCTTGAATc
gacattttcaaaacattgtgATATATGAGGAGACAGTAATAAAGTTGGTC
GCATCGAATGACAAACTATGATAATCTGTGTGTTTTTTAAACTATATTAG
TAGCGTGGATTACTGAAAGTCAACGTACAGAAATTCACGCAAAACTGAAA
TCAGGAATAATACAAAAACAAGTCGTGGATAATTTTTGATCGACCCGTTG
AAATAATGTTTGTTAATATCATCAAGATTTTGTTATTATGTGACATTTGT
ACGTTGATTTATGCTGCTTGGCGTTTTGATGTTCATGTTGATAGGTTAGA
AAACGACGAGAGAGCAGACTTTGATCCTAAACCAAGTTCTTTGGTACAAA
ACCGTGGCGTTAGAACGGTGAGCCATTTACCCAATATTTATTGTGCACCA
CGGAAAACAGTTGTTAGGGTTGACGTGCCGTTACAACATTATTCGCCCAT
GATGGTTGAAGTGAACCGATGTGCGGGGGTAGCTGATAACGTCAATCCGC
AACTTAAAGACTGCGTTAAAAGTTCATCCGAAAAGATTCGTTTTCCAGTT
CGCTCCAAACTGAATCCGACGTATTCGTCTTATAAGGAAGTTGAAAATCA
TTTATCGTGTAAAGGGAGATGTAAATATGACGCTACACAGTGTAAAGGGG
CTTCGAAATGGGATGAAAAACAATGCAAATGTATTTGTCCGTCCAATCAG
TATTGTCCACCACATTACTCTTGGAATCCGATCAAATGCGCATGCACATG
TTCTCGCCGTTGTCATAAACGTCAAATCTTGGACCTTGAAGATTGTACTT
GTATGTGTAAAGCGAAATTCTTTAAACGATGTTCTAAACGAGGTCACGGC
GAACCAAGTCCGATAGACTGCCAGTGTATGGGAAAGCCTCTTTCCAGGGC
GTCATGTCAACCCTGTAGATGTCGAAAATCGGTACCGGAGAGCTTTCTAC
TGCAGTAccttttcacaaaaaagaaacaataattttgatgaaaagattTT
GTAATGTAAATATAAGTAGCTTTCTTCAGTGTAGATTTTTgcgtttttta
attttatttaactatttttcaacattttaatgAATGAAGTGATCAATTAT
ATTTTGTAGAATATCTTGCTAATTTTATATAGGGCTTTTTCAGGTTCGGC
TATTTACCCGGTAATACcaatatctcaaagaaaaacaaaatcctTTCCAA
TTCATGATAATcttatgatgtaatcttttcgtTGATTGACACTCCGAATC
GAAATATTTGGCCGCCATTATTGATGGCAAAACAAATGCGTTCCCCAATG
TTTTCCAAGCAAGGACCCccggaaaaaaataagaaaagattaaTACATAA
GCCTAAATACtctaaattaaagaaaaaactctttcattgaaattctttaa
ttatctgcaatagatttccaaaagatatttaattctaTTATATTACGTCA
AAAGATATTAAGCTTTCTTTTTCGTAAACCCCCggtttcaatacaaaata
ggttagcgggacaaatttttgCCACTAATAATGGCGGCAAAGTTGTTACG
TCACATCTATTGTTTGAGTATACCACAGATTTTGACTTATTTACCGGATT
CTCCGGCGGCATCCCGCTGTTTACCGTTGTATCTTCTATTATTTTTCCTG
TatctattgtttaaaatgaaccgccgccgccgccggtaatacACGAATAC
CGGCGGAA Run BLAST on NCBI transcript from alignment at sc0000087:45387..47244+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008696 ID=TCONS_00008696|Name=TCONS_00008696|organism=Clytia hemisphaerica|type=transcript|length=1858bp|location=Sequence derived from alignment at sc0000087:45387..47244+ (Clytia hemisphaerica)
AAACAGAGCTCTAACGAACATTTGAAGTGTTATTGAAAATTTGCCAATTA
CGCATTTATTGTCTTTGTGGTATCTTTATATCTCAATATTTTGTCCTATG
AGAGATTGACTGACTgacttgattttcttctttctctttttgCTTGAATc
gacattttcaaaacattgtgATATATGAGGAGACAGTAATAAAGTTGGTC
GCATCGAATGACAAACTATGATAATCTGTGTGTTTTTTAAACTATATTAG
TAGCGTGGATTACTGAAAGTCAACGTACAGAAATTCACGCAAAACTGAAA
TCAGGAATAATACAAAAACAAGTCGTGGATAATTTTTGATCGACCCGTTG
AAATAATGTTTGTTAATATCATCAAGATTTTGTTATTATGTGACATTTGT
ACGTTGATTTATGCTGCTTGGCGTTTTGATGTTCATGTTGATAGGTTAGA
AAACGACGAGAGAGCAGACTTTGATCCTAAACCAAGTTCTTTGGTACAAA
ACCGTGGCGTTAGAACGGTGAGCCATTTACCCAATATTTATTGTGCACCA
CGGAAAACAGTTGTTAGGGTTGACGTGCCGTTACAACATTATTCGCCCAT
GATGGTTGAAGTGAACCGATGTGCGGGGGTAGCTGATAACGTCAATCCGC
AACTTAAAGACTGCGTTAAAAGTTCATCCGAAAAGATTCGTTTTCCAGTT
CGCTCCAAACTGAATCCGACGTATTCGTCTTATAAGGAAGTTGAAAATCA
TTTATCGTGTAAAGGGAGATGTAAATATGACGCTACACAGTGTAAAGGGG
CTTCGAAATGGGATGAAAAACAATGCAAATGTATTTGTCCGTCCAATCAG
TATTGTCCACCACATTACTCTTGGAATCCGATCAAATGCGCATGCACATG
TTCTCGCCGTTGTCATAAACGTCAAATCTTGGACCTTGAAGATTGTACTT
GTATGTGTAAAGCGAAATTCTTTAAACGATGTTCTAAACGAGGTCACGGC
GAACCAAGTCCGATAGACTGCCAGTGTATGGGAAAGCCTCTTTCCAGGGC
GTCATGTCAACCCTGTAGATGTCGAAAATCGGTACCGGAGAGCTTTCTAC
TGCAGTAccttttcacaaaaaagaaacaataattttgatgaaaagattTT
GTAATGTAAATATAAGTAGCTTTCTTCAGTGTAGATTTTTgcgtttttta
attttatttaactatttttcaacattttaatgAATGAAGTGATCAATTAT
ATTTTGTAGAATATCTTGCTAATTTTATATAGGGCTTTTTCAGGTTCGGC
TATTTACCCGGTAATACcaatatctcaaagaaaaacaaaatcctTTCCAA
TTCATGATAATcttatgatgtaatcttttcgtTGATTGACACTCCGAATC
GAAATATTTGGCCGCCATTATTGATGGCAAAACAAATGCGTTCCCCAATG
TTTTCCAAGCAAGGACCCccggaaaaaaataagaaaagattaaTACATAA
GCCTAAATACtctaaattaaagaaaaaactctttcattgaaattctttaa
ttatctgcaatagatttccaaaagatatttaattctaTTATATTACGTCA
AAAGATATTAAGCTTTCTTTTTCGTAAACCCCCggtttcaatacaaaata
ggttagcgggacaaatttttgCCACTAATAATGGCGGCAAAGTTGTTACG
TCACATCTATTGTTTGAGTATACCACAGATTTTGACTTATTTACCGGATT
CTCCGGCGGCATCCCGCTGTTTACCGTTGTATCTTCTATTATTTTTCCTG
TatctattgtttaaaatgaaccgccgccgccgccggtaatacACGAATAC
CGGCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008696-exon-sc0000087-1491911889:45387..47244 | TCONS_00008696-exon-sc0000087-1491911889:45387..47244 | Clytia hemisphaerica | exon |
| TCONS_00008696-exon-sc0000087-1510915933:45387..47244 | TCONS_00008696-exon-sc0000087-1510915933:45387..47244 | Clytia hemisphaerica | exon |
| TCONS_00008696-exon-sc0000087-1575043694:45387..47244 | TCONS_00008696-exon-sc0000087-1575043694:45387..47244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:45387..47244 + |
Blast
The following BLAST results are available for this feature:
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