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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008699 ID=TCONS_00008699|Name=TCONS_00008699|organism=Clytia hemisphaerica|type=transcript|length=1228bp
GCTCGTCCTATTCAAATGATTCACTTTTGAAAGATTTAAAATCTGCTGCG
TTTCTTCATTTTTGCGTGTACTTTTGAAATATAGCTTTTAGAGGTGTCCC
TTTAAAAaggtaaacattcgaaagtgGCACGCAAATCACATCTCCAAAAA
TGGCGAAACACGACTTgacctttttttttcaaattttacagaTATTTATT
CTGAGATTCAACGAAATTCACATTAAAGGTATTCATCTGAGACTTGtctt
tatatctttgtttactCTAATTCTAGGTATTAAAAACACAGAAATTTGAT
AATATGcttcaaaatgagaatttttaaattttttgttttggtattttttg
tgGGTGGAGCATTTTCTAGTTCTAATGATGACTTTGTCACCTTACCAAAT
GCAGAATGTATGCCAAGGGAAACTGTAGTTTCTATTGACTCTCCAAGATA
TGCCCTAAAACCAAGTAAAGTTCTACTTCACCGTTGTGATGGAAGTTTCG
ACGATCTAACACCGGCATTGAAAAGTTGTGTTAAAAATGAATCAGTAACT
CTCAATGTTAAAGTACAAAATATCTTTATGTTAACTAATGAGATTGTTGA
GCTGGAAAACCACACAACTTGCAAACAACAGTGTGTTTTTGATGGTTCGC
AGTGcaataaaaaccaaaaatgGGATGCTGAGAACTGTCTTTGTGTATGT
GACCACAACAAACGATTTCAATGTCCTGAACATCATATTTGGGAACCAAA
TCTTTGCCAGTGTGTTTGTAATCGAGCTTGTCCTTTCAAAAGACATTATC
TAGATCAAGAAGACTGCACTTGTACTTGTAAACCAAAATTCTACAAGCGT
TGTAATAAAAGGGACAAAGTTTTAGTGGCAGACAATTGCACATGTACAGA
TCCCAAGTTTCAACCTGTTGAAGGACTTGATGGAAATTGTGATATTATAC
CAACAAAATGGGCAGTTTTGATAATTGTCTTGTCATTCTTTGCTATATTC
ATAATAGCATTTGATTGTATTCTATACACTCGTAACACTGGTTGTGTGTA
TCATACAACTCATATTTGTCACAAAAATGAATCCCGAGAAGAATTGTATC
CAATGAAACGTGGTTTAATGAAAACATCAAATGAAgGCCAAGAAAACAAA
AGTTGTTTATGAAAATATGAATCAGTAAAACGTAGATAAatttttaataa
caaaaaaatatcctATATATCATAGAGC Run BLAST on NCBI protein sequence of TCONS_00008699-protein >TCONS_00008699-protein ID=TCONS_00008699-protein|Name=TCONS_00008699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MRIFKFFVLVFFVGGAFSSSNDDFVTLPNAECMPRETVVSIDSPRYALKP
SKVLLHRCDGSFDDLTPALKSCVKNESVTLNVKVQNIFMLTNEIVELENH
TTCKQQCVFDGSQCNKNQKWDAENCLCVCDHNKRFQCPEHHIWEPNLCQC
VCNRACPFKRHYLDQEDCTCTCKPKFYKRCNKRDKVLVADNCTCTDPKFQ
PVEGLDGNCDIIPTKWAVLIIVLSFFAIFIIAFDCILYTRNTGCVYHTTH
ICHKNESREELYPMKRGLMKTSNEGQENKSCL Run BLAST on NCBI transcript from alignment at sc0000087:57387..59550+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008699 ID=TCONS_00008699|Name=TCONS_00008699|organism=Clytia hemisphaerica|type=transcript|length=2164bp|location=Sequence derived from alignment at sc0000087:57387..59550+ (Clytia hemisphaerica)
GCTCGTCCTATTCAAATGATTCACTTTTGAAAGATTTAAAATCTGCTGCG
TTTCTTCATTTTTGCGTGTACTTTTGAAATATAGCTTTTAGAGGTGTCCC
TTTAAAAaggtaaacattcgaaagtgGCACGCAAATCACATCTCCAAAAA
TGGCGAAACACGACTTgacctttttttttcaaattttacagaTATTTATT
CTGAGATTCAACGAAATTCACATTAAAGGTATTCATCTGAGACTTGtctt
tatatctttgtttactCTAATTCTAGGTATTAAAAACACAGAAATTTGAT
AATATGcttcaaaatgagaatttttaaattttttgttttggtattttttg
tgGGTGGAGCATTTTCTAGTTCTAATGATGACTTTGTCACCTTACCAAAT
GCAGAATGTATGCCAAGGGAAACTGTAGTTTCTATTGACTCTCCAAGATA
TGCCCTAAAACCAAGTAAAGTTCTACTTCACCGTTGTGATGGAAGTTTCG
ACGATCTAACACCGGCATTGAAAAGTTGTGTTAAAAATGAATCAGTAACT
CTCAATGTTAAAGTACAAAATATCTTTATGTTAACTAATGAGATTGTTGA
GCTGGAAAACCACACAACTTGCAAACAACAGTGTGTTTTTGATGGTTCGC
AGTGcaataaaaaccaaaaatgGGATGCTGAGAACTGTCTTTGTGTATGT
GACCACAACAAACGATTTCAATGTCCTGAACATCATATTTGGGAACCAAA
TCTTTGCCAGTGTGTTTGTAATCGAGCTTGTCCTTTCAAAAGACATTATC
TAGATCAAGAAGACTGCACTTGTACTTGTAAACCAAAATTCTACAAGCGT
TGTAATAAAAGGGACAAAGTTTTAGTGGCAGACAATTGCACATGTACAGA
TCCCAAGTTTCAACCTGTTGAAGGACTTGATGGAAATTGTGATATTATAC
CAACAAAATGGGCAGTTTTGATAATTGTCTTGTCATTCTTTGCTATATTC
ATAATAGCATTTGATTGTATTCTATACACTCGTAACACTGGTTGTGTGTA
TCATACAACTCATATTTGTCACAAAAATGAATCCCGAGAAGAATTGTATC
CAATGAAACGTGGTTTAATGAAAACATCAAATGAAGTGAGAGTATGAGAT
ATAGGTTATATTCAAAAGGGGTTACTTTCAtaactaccgtaagttggtct
aatatcgacatcctcctttagagacaggaataatatgaaagtttgaaTTA
CTGACTAAAAAAGGATGATTCCTCCCTGACCACCAAGTAAAGAAAAATAG
CTTTGACCtttttatcaatttcagctgataaaaagggtgttggaaataga
tgagggatgttggcattagaccaagttacggtatggGGTATGAAAGCACA
AAATATGTTACATCTTGGTGATGGATTATGGTTTGTTCAGATTAATTTTC
ATGGTTATAGCTGTTTTCTTTGAGAAATATTTGGAGAACGCACAAATTGT
TCCATCGTATTGAAGCTGGGATGGTGAAACGATCTAGTTTGCTTTGGATA
TTAATAGCaaatcataaaaattgacaGCTAATTTGCTGTTCATTGTTCAA
ATTGCTTCTCTACATTCCCTTGctaattaaatttttgaaagtttttcact
cGGGACATTTTTACCCCCCTTAAAGATAAGAAATGCTCTTAAAACTTCCT
CATTTTGCCTCAATTCTTCTTATCAGCTCATTTCTAGTATAGAACTCCCA
ACTGGGACATTCTTATTTCAACCCACTAAGCAATTAGGTTTTTAGAGTTT
TTCAACCCcatgcttattccaaacccccatCTATTATAGACTTGAGTGTG
TTATTATGTGAAATCATTATAAATCAgtgtttttgagaaaaagtctTGAG
AGAGAGGCAGGTCCTCTTTAAATACATGTTTTAATGGTTGATTTGATTTC
ATATGTTACAGCAAACTCTTTCAAAGTTTAATCCATTCAACTGTTCTTTG
TAGTCTAATCTCTTGTTGAAGTGTCACAGGAAAATTTTCATGAACAATtt
gcttttttgtttcaattttaggGCCAAGAAAACAAAAGTTGTTTATGAAA
ATATGAATCAGTAAAACGTAGATAAatttttaataacaaaaaaatatcct
ATATATCATAGAGC Coding sequence (CDS) from alignment at sc0000087:57387..59550+ >TCONS_00008699 ID=TCONS_00008699|Name=TCONS_00008699|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at sc0000087:57387..59550+ (Clytia hemisphaerica)
atgagaatttttaaattttttgttttggtattttttgtgGGTGGAGCATT
TTCTAGTTCTAATGATGACTTTGTCACCTTACCAAATGCAGAATGTATGC
CAAGGGAAACTGTAGTTTCTATTGACTCTCCAAGATATGCCCTAAAACCA
AGTAAAGTTCTACTTCACCGTTGTGATGGAAGTTTCGACGATCTAACACC
GGCATTGAAAAGTTGTGTTAAAAATGAATCAGTAACTCTCAATGTTAAAG
TACAAAATATCTTTATGTTAACTAATGAGATTGTTGAGCTGGAAAACCAC
ACAACTTGCAAACAACAGTGTGTTTTTGATGGTTCGCAGTGcaataaaaa
ccaaaaatgGGATGCTGAGAACTGTCTTTGTGTATGTGACCACAACAAAC
GATTTCAATGTCCTGAACATCATATTTGGGAACCAAATCTTTGCCAGTGT
GTTTGTAATCGAGCTTGTCCTTTCAAAAGACATTATCTAGATCAAGAAGA
CTGCACTTGTACTTGTAAACCAAAATTCTACAAGCGTTGTAATAAAAGGG
ACAAAGTTTTAGTGGCAGACAATTGCACATGTACAGATCCCAAGTTTCAA
CCTGTTGAAGGACTTGATGGAAATTGTGATATTATACCAACAAAATGGGC
AGTTTTGATAATTGTCTTGTCATTCTTTGCTATATTCATAATAGCATTTG
ATTGTATTCTATACACTCGTAACACTGGTTGTGTGTATCATACAACTCAT
ATTTGTCACAAAAATGAATCCCGAGAAGAATTGTATCCAATGAAACGTGG
TTTAATGAAAACATCAAATGAAgGCCAAGAAAACAAAAGTTGTTTATGAa
tgagaatttttaaattttttgttttggtattttttgtgGGTGGAGCATTT
TCTAGTTCTAATGATGACTTTGTCACCTTACCAAATGCAGAATGTATGCC
AAGGGAAACTGTAGTTTCTATTGACTCTCCAAGATATGCCCTAAAACCAA
GTAAAGTTCTACTTCACCGTTGTGATGGAAGTTTCGACGATCTAACACCG
GCATTGAAAAGTTGTGTTAAAAATGAATCAGTAACTCTCAATGTTAAAGT
ACAAAATATCTTTATGTTAACTAATGAGATTGTTGAGCTGGAAAACCACA
CAACTTGCAAACAACAGTGTGTTTTTGATGGTTCGCAGTGcaataaaaac
caaaaatgGGATGCTGAGAACTGTCTTTGTGTATGTGACCACAACAAACG
ATTTCAATGTCCTGAACATCATATTTGGGAACCAAATCTTTGCCAGTGTG
TTTGTAATCGAGCTTGTCCTTTCAAAAGACATTATCTAGATCAAGAAGAC
TGCACTTGTACTTGTAAACCAAAATTCTACAAGCGTTGTAATAAAAGGGA
CAAAGTTTTAGTGGCAGACAATTGCACATGTACAGATCCCAAGTTTCAAC
CTGTTGAAGGACTTGATGGAAATTGTGATATTATACCAACAAAATGGGCA
GTTTTGATAATTGTCTTGTCATTCTTTGCTATATTCATAATAGCATTTGA
TTGTATTCTATACACTCGTAACACTGGTTGTGTGTATCATACAACTCATA
TTTGTCACAAAAATGAATCCCGAGAAGAATTGTATCCAATGAAACGTGGT
TTAATGAAAACATCAAATGAAgGCCAAGAAAACAAAAGTTGTTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008699-exon-sc0000087-1491911889:57387..58521 | TCONS_00008699-exon-sc0000087-1491911889:57387..58521 | Clytia hemisphaerica | exon |
| TCONS_00008699-exon-sc0000087-1510915933:57387..58521 | TCONS_00008699-exon-sc0000087-1510915933:57387..58521 | Clytia hemisphaerica | exon |
| TCONS_00008699-exon-sc0000087-1575043694:57387..58521 | TCONS_00008699-exon-sc0000087-1575043694:57387..58521 | Clytia hemisphaerica | exon |
| TCONS_00008699-exon-sc0000087-1491911889:59458..59550 | TCONS_00008699-exon-sc0000087-1491911889:59458..59550 | Clytia hemisphaerica | exon |
| TCONS_00008699-exon-sc0000087-1510915933:59458..59550 | TCONS_00008699-exon-sc0000087-1510915933:59458..59550 | Clytia hemisphaerica | exon |
| TCONS_00008699-exon-sc0000087-1575043694:59458..59550 | TCONS_00008699-exon-sc0000087-1575043694:59458..59550 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:57387..59550 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029034 | Cystine-knot_cytokine |
Blast
The following BLAST results are available for this feature:
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