TCONS_00008708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008708
Unique NameTCONS_00008708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008708 ID=TCONS_00008708|Name=TCONS_00008708|organism=Clytia hemisphaerica|type=transcript|length=381bp
CGTTCAACTCGATTCAAAGTGGCTGCTAAACGAAAATTATCAAATACTAG
TTGCCGACTTTCCGACGGTAGAAATAACTACCAAATAAACAGCGTCCAAC
ATGTCACAGATGTTAATGGAGTGTTTTCTTCTAAACCCTCAACATATCAA
CAAGTGAAGTATGTTACACCACGCAAACAAAACATTCTTCAGCGGTTATG
GCGGAGATTGAAGCGCGACAAATTGCGAAAACTTGCCAAGAAAATAACAA
ACGCAGAAGAAACCATCGCGATTGACCGACGATGGTATCACAAATTGATT
TGGTGCAGAGGCGAGACGGATCCAGATGATCTGTTAATGGAAAATTCCGT
TCCCCCACCCCCGGGTTTCAAAGAAAGCGAA
Run BLAST on NCBI

protein sequence of TCONS_00008708-protein

>TCONS_00008708-protein ID=TCONS_00008708-protein|Name=TCONS_00008708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
RSTRFKVAAKRKLSNTSCRLSDGRNNYQINSVQHVTDVNGVFSSKPSTYQ
QVKYVTPRKQNILQRLWRRLKRDKLRKLAKKITNAEETIAIDRRWYHKLI
WCRGETDPDDLLMENSVPPPPGFKESE
Run BLAST on NCBI

transcript from alignment at sc0000087:247533..248363+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008708 ID=TCONS_00008708|Name=TCONS_00008708|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0000087:247533..248363+ (Clytia hemisphaerica)
CGTTCAACTCGATTCAAAGTGGCTGCTAAACGAAAATTATCAAATACTAG
TTGCCGACTTTCCGACGGTAGAAATAACTACCAAATAAACAGCGTCCAAC
ATGTCACAGATGTTAATGGAGTGTTTTCTTCTAAACCCTCAACATATCAA
CAAGGTAACATAATGACTACTTTTTAGTTCTCCTTTTCACATAAATGTCT
acattttttaagcttttgacCTTTTTACCTGAAAGCTTTTTTGTCGTGGA
TGCCTTTGTATACCTTCTCTCGGGATAAGAAATAGATTTtgtaaaatgaa
attattttccaaTCCATATAGTGATCCTTTCCCAATTCTTCCCACTATCT
CTAAACCTTTTGCAGCTTCCTAGCCCTTGTCAACTCTGTGTTATAAATTT
TCTTGTGACAATATCATTTATCTCAATACTTGGAAATGATACAGTTATAT
TCTTGGTTAGATTTGCAGCTTATTTTTAATTCACCGCTTAggctttttca
tttcatttgattgactttcatgattttttgttgatatcatgataatgtgC
GTACACGTATTATGTGATTGATATACTGAGCTTGACCTTGAATTTTCTTT
ATAGTGAAGTATGTTACACCACGCAAACAAAACATTCTTCAGCGGTTATG
GCGGAGATTGAAGCGCGACAAATTGCGAAAACTTGCCAAGAAAATAACAA
ACGCAGAAGAAACCATCGCGATTGACCGACGATGGTATCACAAATTGATT
TGGTGCAGAGGCGAGACGGATCCAGATGATCTGTTAATGGAAAATTCCGT
TCCCCCACCCCCGGGTTTCAAAGAAAGCGAA

Coding sequence (CDS) from alignment at sc0000087:247533..248363+

>TCONS_00008708 ID=TCONS_00008708|Name=TCONS_00008708|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000087:247533..248363+ (Clytia hemisphaerica)
CGTTCAACTCGATTCAAAGTGGCTGCTAAACGAAAATTATCAAATACTAG
TTGCCGACTTTCCGACGGTAGAAATAACTACCAAATAAACAGCGTCCAAC
ATGTCACAGATGTTAATGGAGTGTTTTCTTCTAAACCCTCAACATATCAA
CAAGTGAAGTATGTTACACCACGCAAACAAAACATTCTTCAGCGGTTATG
GCGGAGATTGAAGCGCGACAAATTGCGAAAACTTGCCAAGAAAATAACAA
ACGCAGAAGAAACCATCGCGATTGACCGACGATGGTATCACAAATTGATT
TGGTGCAGAGGCGAGACGGATCCAGATGATCTGTTAATGGAAAATTCCGT
TCCCCCACCCCCGGGTTTCAAAGAAAGCGAACGTTCAACTCGATTCAAAG
TGGCTGCTAAACGAAAATTATCAAATACTAGTTGCCGACTTTCCGACGGT
AGAAATAACTACCAAATAAACAGCGTCCAACATGTCACAGATGTTAATGG
AGTGTTTTCTTCTAAACCCTCAACATATCAACAAGTGAAGTATGTTACAC
CACGCAAACAAAACATTCTTCAGCGGTTATGGCGGAGATTGAAGCGCGAC
AAATTGCGAAAACTTGCCAAGAAAATAACAAACGCAGAAGAAACCATCGC
GATTGACCGACGATGGTATCACAAATTGATTTGGTGCAGAGGCGAGACGG
ATCCAGATGATCTGTTAATGGAAAATTCCGTTCCCCCACCCCCGGGTTTC
AAAGAAAGCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004894XLOC_004894Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008708-proteinTCONS_00008708-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008708-exon-sc0000087-1491911889:247533..247686TCONS_00008708-exon-sc0000087-1491911889:247533..247686Clytia hemisphaericaexon
TCONS_00008708-exon-sc0000087-1510915933:247533..247686TCONS_00008708-exon-sc0000087-1510915933:247533..247686Clytia hemisphaericaexon
TCONS_00008708-exon-sc0000087-1575043694:247533..247686TCONS_00008708-exon-sc0000087-1575043694:247533..247686Clytia hemisphaericaexon
TCONS_00008708-exon-sc0000087-1491911889:248137..248363TCONS_00008708-exon-sc0000087-1491911889:248137..248363Clytia hemisphaericaexon
TCONS_00008708-exon-sc0000087-1510915933:248137..248363TCONS_00008708-exon-sc0000087-1510915933:248137..248363Clytia hemisphaericaexon
TCONS_00008708-exon-sc0000087-1575043694:248137..248363TCONS_00008708-exon-sc0000087-1575043694:248137..248363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:247533..248363 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.603425	0.700635	0.228487	0	0.219807	0	0.993061	0.347633	0.430599	0.8359	0.274744	0.274362	0.142464	0.117125	0	0.929058	0.634837	0.657796	0.917781	1.19658	3.21007	0	0.215013	0.885834	0.59294	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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