|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008749 ID=TCONS_00008749|Name=TCONS_00008749|organism=Clytia hemisphaerica|type=transcript|length=875bp
AATTACAACACTTTTTGTCAACAAGATTTACATCGAATtacatttctttt
gtttcagcGTAACCCAGAAGGCATTGCATCCATCCTCTTCCACGAACCTG
AAATGGCCGATGAATGTATCCAGACGCTGAACGGGCGGTTTTATGGCGGG
CGAACAATCAGCGCGGCCACGTATGACGGAGTGACGTCATACAAAATTGA
AGAGACTAAAGAGGAGCTTGAAAAACGTTTGGACGAATGGGAAAAATTTA
TCGGCGGagatgatgacgatgatgatgatgacgcAACAGTGACGTAATAT
TGATTGATGACATCATTGACGTACGACCGTTTGGATTTCATGAATGCTAC
CCACTTGCACTGGTCAAAGAATTTGAGGTGAACTTTATTCCTCGGGATAT
TTCATTGATGTAAAGTCAAAATTAGATTCGACGACGTTGTTGTGAGATAC
AGAgactttcataaaaaaatatacgaTAAACGGTTGGTCTGAATCCAGAA
TACATGGTATGTTTTATAAGACTTGGTGGAAAAATGACAGTGCCCACCAT
CACTACATTGATATCTCTCCTCTCTGTAAGAGTCATTGAAAGAATCCACT
AATTCAAATTGTGGACACTGATTTTGAATTTGGAGTAATACAGCACCAAG
TATTGTTGATCCATGGGAAAAATAGATAGATATTTTAGGTacattatttt
gacattttgtgctgtttttaaaatttgtatAAAGTGTACAATTTATATGG
AAATATGAAGTCCAATGATACTCAAAGCTTTTTCCTTTATAATGATTaat
ttagcctggatatccaggcagtaaactatttcacagtctagttttttata
ttttatgttctggtttacagcctgg Run BLAST on NCBI transcript from alignment at sc0000087:637403..640855+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008749 ID=TCONS_00008749|Name=TCONS_00008749|organism=Clytia hemisphaerica|type=transcript|length=3453bp|location=Sequence derived from alignment at sc0000087:637403..640855+ (Clytia hemisphaerica)
AATTACAACACTTTTTGTCAACAAGATTTACATCGAATtacatttctttt
gtttcagcGTAACCCAGAAGGCATTGCATCCATCCTCTTCCACGAACCTG
AAATGGCCGATGAATGTATCCAGGTACTAcacattttttggacctacctg
gaggtcctataaattaacctttgttcgtccgtccgtccgtctgttaccag
cttttctcgagattagctcattagttttttctgatttttagcacaaagat
gcaaaatggcaatacccaaaaagtgacgaagcctgattttcgagaaaaaa
aaactttccggccgaaaatgccggaaatatacaggaaaaaccggtttttt
gacattttctcgcgatttcatcattagttttttctgatttttggcttaaa
gatgcgtattaacaatgccaaaaacatggccgagtccaatttttgagaaa
aaattttttccggccgaaaatgccggaaatatgccggaaatcaccttttt
tctcgattttcattagactttttccttatgattggttgttttttcattca
aaaacattttaatagcaatgcccaccatcaagcatgtttcaattttcaat
aaaattgatttttgaatccggaactattaaaaaatcgccggaacaaccta
ttttagccagaaagacagtatttcttgaatttctcaagctgtactttata
ttttgttatgaaattttgcacactgattttgcacactgatgcaaaatgac
aatacctaaaatgtgacggagcccgattttcgaaaaacatttttttccgg
ccgaaaatgccggaaatatgccggaaaaccatttttttgacattttctcg
aattttcatctttagtttcatctgattttttgcagaaagatgcgtattcg
caatgctcaaaacatgacagagttcgatttattgagaacatttttttttt
ccggccgaaaatgccggaaatatgccggatatcgccgtttttgcagattt
tcattgggcaTTTTCCTtgcatttctttgttttttctcaaaaaaaaacat
cattgatagcaattcccaccatcaatcatgattcgattgtcaataaaact
gattttttaataagaaacaaacgactaattttaatagatcgtcactattt
gtgttctgaatggtttaatggtcacgctcacgtagatattaattatgtgt
taaatgcataaccaggtaggtccataaaagtatcccTTGTTTTGTAAGCA
ACTCAAATTTTCGCGTTAGCCCTCGGGCTgcttgcttagcattctagctc
atttaaaaaaagaattgctTTGACCCCTGATACTGTCGTGTGCCCGGACT
CTTAGGTTCCAAGTAAACGAGAGGGTTTgaataaatgggggggggggggt
tgaaaaagtttcaaaattttaataaacggggggggggcctaattaccagg
gggttggaaattgtaattACGAAAGCCCCAAAATAAGGCAAGTATTGGCT
AAAATCAGGATATTTAGTGCagaataagggaccttctctttgaaagctga
agaaattcttaaaaactaataaacgggggggggggcttaattaccagggg
gttggaaattgtaattACGAAAGCCCCAAAATAAGGCAAGTATTGGCTAA
AATCAGGATATTTAGTGCagaataagggaccttctctttgaaagctgaag
aaattcttaaaaactaataaacgggggggggggcttaattaccagggggt
tggaaattgtaattACGAAAGCCCCAAAATAAGGCAAGTATTGGCTAAAA
TCAGGATATTTAGTGCagaataagggaccttctctttgaaagctgaagaa
attcttaaaaactaataaacgggggggggggcttaattaccagggggttg
gaaattgtaattACGAAAGCCCCAAAATAAGGCAAGTATTGGCTAAAATC
AGGATATTTAGTGCagaataagggaccttctctttgaaagctgaagaaat
tcttaaaaactaataaacgggggggggggcttaattaccagggggttgga
aattgtaattACGAAAGCCCCAAAATAAGGCAAGTATTGGCTAAAATCAG
GATATTTAGTGCagaataagggaccttctctttgaaagctgaagaaattc
ttaaaaactaataaacggggggggggagggggtttggaaaattttcgaaa
aattgacaaGCGGAGGGGGgatgtttatttggaacctaagaatATACTCG
CTATTCTCAGTCCCCGGATTCTATATCCCTATTATTGGTGTCTGTACAGC
AAGGCCAACAAAAAGGCCgtaaaaaagacacaaaagtAGAATAAATAGAT
GAATTAAAAGTTGTAATGTGCTGAAAAGATGATTTTAAGTGGAATATTTG
AAGGcttctaaaaagaaaataaattggCAAAACAAAAGTAGGTTTACACG
ATTTTACAAGAATGTACTCATTCAGAATATTCATGGTCAACTTGACCAAA
AGTTTTAAGAATACACAAGGATATcaatcaccatcatggaatttagcaac
aaAGCCCAAGAATTCCGTGAGACACTATTTTAAGGCGTGCACAGTATGCA
tagtaaaatcttttgaaaCGTATCAAGTCTTCAGTTCTCTATTTCAAAAA
GTCATAATTTCGATGTAATAATTCTTTCATAATTTTGATTATCTCCCATA
GACGCTGAACGGGCGGTTTTATGGCGGGCGAACAATCAGCGCGGCCACGT
ATGACGGAGTGACGTCATACAAAATTGAAGAGACTAAAGAGGAGCTTGAA
AAACGTTTGGACGAATGGGAAAAATTTATCGGCGGagatgatgacgatga
tgatgatgacgcAACAGTGACGTAATATTGATTGATGACATCATTGACGT
ACGACCGTTTGGATTTCATGAATGCTACCCACTTGCACTGGTCAAAGAAT
TTGAGGTGAACTTTATTCCTCGGGATATTTCATTGATGTAAAGTCAAAAT
TAGATTCGACGACGTTGTTGTGAGATACAGAgactttcataaaaaaatat
acgaTAAACGGTTGGTCTGAATCCAGAATACATGGTATGTTTTATAAGAC
TTGGTGGAAAAATGACAGTGCCCACCATCACTACATTGATATCTCTCCTC
TCTGTAAGAGTCATTGAAAGAATCCACTAATTCAAATTGTGGACACTGAT
TTTGAATTTGGAGTAATACAGCACCAAGTATTGTTGATCCATGGGAAAAA
TAGATAGATATTTTAGGTacattattttgacattttgtgctgtttttaaa
atttgtatAAAGTGTACAATTTATATGGAAATATGAAGTCCAATGATACT
CAAAGCTTTTTCCTTTATAATGATTaatttagcctggatatccaggcagt
aaactatttcacagtctagttttttatattttatgttctggtttacagcc
tgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008749-exon-sc0000087-1491911889:637403..637525 | TCONS_00008749-exon-sc0000087-1491911889:637403..637525 | Clytia hemisphaerica | exon |
| TCONS_00008749-exon-sc0000087-1510915933:637403..637525 | TCONS_00008749-exon-sc0000087-1510915933:637403..637525 | Clytia hemisphaerica | exon |
| TCONS_00008749-exon-sc0000087-1575043694:637403..637525 | TCONS_00008749-exon-sc0000087-1575043694:637403..637525 | Clytia hemisphaerica | exon |
| TCONS_00008749-exon-sc0000087-1491911889:640104..640855 | TCONS_00008749-exon-sc0000087-1491911889:640104..640855 | Clytia hemisphaerica | exon |
| TCONS_00008749-exon-sc0000087-1510915933:640104..640855 | TCONS_00008749-exon-sc0000087-1510915933:640104..640855 | Clytia hemisphaerica | exon |
| TCONS_00008749-exon-sc0000087-1575043694:640104..640855 | TCONS_00008749-exon-sc0000087-1575043694:640104..640855 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:637403..640855 + |
Blast
The following BLAST results are available for this feature:
|
