TCONS_00008789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008789
Unique NameTCONS_00008789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3787

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008789 ID=TCONS_00008789|Name=TCONS_00008789|organism=Clytia hemisphaerica|type=transcript|length=3787bp
TTGACGGCAATTATCATGCTGCAGTTAAATATAGAGTTTACCTACTCCAC
AGTAGCAGCCATAGCAGAGGACATGCTCAATTCTTTCATTCCTAacataa
aaggaaaattatacCTCTTTACCATATTGCCAGTTTTCTTCTCTGACTTT
ATCCTGCTGAACAAGCTATTTACGGTCAGTCGAAACTGCACNAAGCCATT
TATGGTCAGTCGGGTCCAGCTGTTCCACAAGCCGCATTCTGCAGTGCATT
CTGTGACAACATTGGACACAAATATAGCCGACTGTTTCAAGATGgtattg
aaaacgaaagtagctaTGAAGGACAACGAGAAAAAAAAGCTCTACTTCTC
AGCTTCAAACGCACTCTGTTGTAGAggcttttctagaaaattacaaaaac
ggCCGCTTTTTCAAAGACAGGAAGATCTCCGAGAGAGAACAAAACAAACG
TGGTttcaaaaacgaaagtaaaGATCACGAGGAGTCACGAAAGGCCAAGT
TTCGGAAGTTTCAAGTTTCAGTGCATGATCTTGCGCTTGTCCTGGGACTG
GGcaagcttataaaaaatattaactTACACACAAAAATGATAACCTTTAT
CTGTTTATAGAAAACTAAACAATTTAGTGATGTCTTTCATACAATacttt
ataattttcatggtcCTTGGATCTATTGTTGAATCAAGATACAGTGAAAG
CGGTTTTTACAAACAATCTTCAACAAAAGCTTTGAATTTCAATGATGGTA
AGACACTTTCTTCCTGGGATGTTGGCTTTGACTGTAAGATTAAAAATTTG
GCATATGAATATACCAAAAAACTTTCACCTGGAACAGGCAATGAAGTTGA
ACTTCAGCTGGTTTTTGATGCACTTGAGTTAGGTTCTGTCTGCAACAAAA
CAACAGTGTCTTCTGAAAAAGTTGATTACCCCTGGCAAAAGAATGActta
aaagaagaagaaaaagatgtGACAACTGTTTTTGTTGACAAATATCTTGG
AAGGAGTAGCCACAATGGAGCTATAAACAAGCCTCTGTCAGATATTCAAC
CAGGAATTGATTTATGCTCTTCTAAACTTCAAGCTTCCTCAACTTTGAAG
AAATGTATAGTTGCTGTGCGGTTTGGAACCTATGAGATTACAAAACCATT
AAAAATTTCCAGCAACATtgaaataaagaatttcaaagATGAGAAAGTGA
CAGTTTCTGGCTTTAAAACAGTAAAACCAAGTTGGAAAGCATTTAAACAA
AGAACCGACTTGTTTGAAAACTTTAATCCAATTTTTGAAGACATCTCacc
aaaagaaagtttgagAAATGTTGAATATCTCGGCGAGGTTGCAAACTCTG
AGGCATGTCAAAGTCTGTGTGTGAAGATGAGTAAATGTTCCTCTTTTGTT
TACTATCCAAGCTCTGTGAAGGGATTTGAAAACCAATGTTTTGTGAGAAT
TGATGGTGTTTGGAATCCTATCAAGACAGAAGGTGTACACAGTGGCAAAA
AGGTCAACATATTTTCTGCAAATCTTGCTGaggaaaatattgacaaagtA
GATCAAGTCTTTGCATATGGTGGGCGTCTCGTTAGAGCAAGGTTCCCAAA
TGCTGATCCTGTTGTTCAAGGTTTGCACACCACACCAACTGGATGGGTAC
CCAAAGCTGACAAATGGCTGCCCCCTAAGCAGTTTGATGATGCACTTGAA
ATTCACTTAGCATCACCTACAAGAAATGGTTCATTATTTCCTGGCTTTCA
AATCGGAATTGGTGGCTCTGTCAGTCAATTTGACCCACCAAGGTCTTACT
GGGGTACAAAACATCCTTTCGGAGGAGGTGGTTCCACCTACACTGTACCG
TCAGGTCTTCAATATTCCGAGGATTTGGAAATTAATGGTAGACACTGGAA
AACACCTGGAACAGGAATTGTACATGCTTTTCAAAACCTTCATTGGGAAA
ACTGGATTTACAAACTTGACAATCGAGATGAgGAAAGTCGTACTTTCACT
TGGACATGGGGAGGTTTTCAAGGAGGCAGAGGTTCAAAGAGCGGCGGTGA
ATGGtacgttgaaaatattttcgaagAACTTGATGTTGCAAATGAGTGGT
ATTTTAATGAATCGCAGAAGATTTTGTATCTAATGCCAAACTCCAGTGAA
GGAAGCAATGGATTACCAGAAGAGATTCAAATTCCAATGGTAACGACTTT
AGGATACATCGTTGGTTCTCAAGATAAGCCTGTTGAGAACATTACCATTA
GTGGGATGACCTTGATGGGAACACAAACAACTTTCTTGGAGAAATACATG
GTGCCAAGTGGTGGAGATTGGACTGTTCATCGTGGTGGAGTGTTGTACAT
TGAAGGCTCTGTAAACACACTTATTGAAGGTTGCACATTTCATTCTCCTG
GTGGAAATGGTATTTTCGCTTACCAATACAACAGAAACTTGGTGATATCC
CACAACACAATGTTCCGACTTGGAGATAACGGTATTGTTCTTGTGGGTGA
GTCCAGGCTAATGGATGGTAGTGTTGGGAATCAGCCTAGAGGAACACAAA
TCCTTTACAACATAATCAGCGAAAATGGAATCTGGGGGAAACAGACGTAT
CCATTCGTTCAGTCAGTAGCATGTCAAACGCATTTGGAAGGAAACATCTT
TTTCAGTGGTCCAAGAGCTGGCTTGAATTTCAATGACGGATTTGGTGGTG
GGAATAGTGTACAATCGAATCTGTTGTTCAATTTTGTGAGAGAAACGGAT
GATCATGGACCAATCAACACATGGGATCGAGTTCCTTACTTAACACGAGT
TGCCAATGGATCTACCGTCTCGTTAAATGTGAAAGAAAACACAATTTACA
ACAACTTCATTATTAATAATTATCGTTCTGTATGGCCTATTGATCATGAT
GATGGCACATGTTTTTGGAGAGATACCAAAAACTTTCTCGTCTATGGTGg
TTTTAAGAATTACTTAGGACACAACAAAATATCTCAAgataatgtttatg
tttatcCTGACCGACATCCAGCCAAGGAAGCTTTCAGTAAACTCTTCTGT
GCTGATACACAAGGTCAAACGTTAGGAACTTCTGGGTACGGTGACGTTTA
TCAGAATAACAAATGCGTGATCGGTATTCAGAATATTTATTCTCTTGGTA
AATGTGATATCAACCATATTGATATGACTATTCCACATTTTGTTAACAAT
CAACTCTACACACCTGATGGTACTGTTATCATTCAATGTGGTTCCAACCA
ATGGAATATAACACAAGCTCAAGCACATGGGATAGATGTTGGAAGCAAAG
TAGATAAATTACCGAATGATGATTATATTATTCAGTGGGGAAAAGATTTA
TTTGgcctgtagaaaaaatcaaacaagttttttttgatttttttaaaaag
gattttgGCTACTGGaaagagatttttttgaaattgtaaatattttttaa
taaattgatttttcaatttgaattttgataattttgtaaTGATTCAAGTA
ATTCAAAGGAATTTTTAGTCACCATACCTTTAAGATGTGAAtgtatattt
tttgtaattcttataattcttattaatgacattttataTACGATAATGGT
CGCTTACCCAAAAACCCTTCCTACAGGTACACTTGTAACATTTTAAAATT
AGTAAGAAAATACAATGACAAAAAACACAATGACAAAAAACTGGGCACAG
TTTAGGCATGAGACCTATGAAATTGCACAAAGTGTCTTGGATTGAGAAAA
GTGTAgggtatttttataagaattcatTTGCAAGGAT
Run BLAST on NCBI

protein sequence of TCONS_00008789-protein

>TCONS_00008789-protein ID=TCONS_00008789-protein|Name=TCONS_00008789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=910bp
MSFIQYFIIFMVLGSIVESRYSESGFYKQSSTKALNFNDGKTLSSWDVGF
DCKIKNLAYEYTKKLSPGTGNEVELQLVFDALELGSVCNKTTVSSEKVDY
PWQKNDLKEEEKDVTTVFVDKYLGRSSHNGAINKPLSDIQPGIDLCSSKL
QASSTLKKCIVAVRFGTYEITKPLKISSNIEIKNFKDEKVTVSGFKTVKP
SWKAFKQRTDLFENFNPIFEDISPKESLRNVEYLGEVANSEACQSLCVKM
SKCSSFVYYPSSVKGFENQCFVRIDGVWNPIKTEGVHSGKKVNIFSANLA
EENIDKVDQVFAYGGRLVRARFPNADPVVQGLHTTPTGWVPKADKWLPPK
QFDDALEIHLASPTRNGSLFPGFQIGIGGSVSQFDPPRSYWGTKHPFGGG
GSTYTVPSGLQYSEDLEINGRHWKTPGTGIVHAFQNLHWENWIYKLDNRD
EESRTFTWTWGGFQGGRGSKSGGEWYVENIFEELDVANEWYFNESQKILY
LMPNSSEGSNGLPEEIQIPMVTTLGYIVGSQDKPVENITISGMTLMGTQT
TFLEKYMVPSGGDWTVHRGGVLYIEGSVNTLIEGCTFHSPGGNGIFAYQY
NRNLVISHNTMFRLGDNGIVLVGESRLMDGSVGNQPRGTQILYNIISENG
IWGKQTYPFVQSVACQTHLEGNIFFSGPRAGLNFNDGFGGGNSVQSNLLF
NFVRETDDHGPINTWDRVPYLTRVANGSTVSLNVKENTIYNNFIINNYRS
VWPIDHDDGTCFWRDTKNFLVYGGFKNYLGHNKISQDNVYVYPDRHPAKE
AFSKLFCADTQGQTLGTSGYGDVYQNNKCVIGIQNIYSLGKCDINHIDMT
IPHFVNNQLYTPDGTVIIQCGSNQWNITQAQAHGIDVGSKVDKLPNDDYI
IQWGKDLFGL
Run BLAST on NCBI

transcript from alignment at sc0000087:498391..507999-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008789 ID=TCONS_00008789|Name=TCONS_00008789|organism=Clytia hemisphaerica|type=transcript|length=9609bp|location=Sequence derived from alignment at sc0000087:498391..507999- (Clytia hemisphaerica)
TTGACGGCAATTATCATGCTGCAGTTAAATATAGAGTTTACCTACTCCAC
AGTAGCAGCCATAGCAGAGGACATGCTCAATTCTTTCATTCCTAACATAA
AAGGAAAATTATACCTCTTTACCATATTGCCAGTTTTCTTCTCTGACTTT
ATCCTGCTGAACAAGCTATTTACGGTCAGTCGAAACTGCACNAAGCCATT
TATGGTCAGTCGGGTCCAGCTGTTCCACAAGCCGCATTCTGCAGTGCATT
CTGTGACAACATTGGACACAAATATAGCCGACTGTTTCAAGATGGTATTG
AAAACGAAAGTAGCTATGAAGGACAACGAGAAAAAAAAGCTCTACTTCTC
AGCTTCAAACGCACTCTGTTGTAGAGGCTTTTCTAGAAAATTACAAAAAC
GGCCGCTTTTTCAAAGACAGGAAGATCTCCGAGAGAGAACAAAACAAACG
TGGTTTCAAAAACGAAAGTAAAGATCACGAGGAGTCACGAAAGGCCAAGT
TTCGGAAGTTTCAAGTTTCAGTGCATGATCTTGCGCTTGTCCTGGGACTG
GGCAAGCTTATAAAAAATATTAACTTACACACAAAAATGATAACCTTTAT
CTGTTTATAGAAAACTAAACAATTTAGTGATGTCTTTCATACAATACTTT
ATAATTTTCATGGTCCTTGGATCTATTGTTGAATCAAGATACAGTGAAAG
CGGTTTTTACAAACAATCTTCAACAAAAGCTTTGAATTTCAATGATGGTA
AGACACTTTCTTCCTGGGATGTTGGCTTTGACTGTAAGATTAAAAATTTG
GCATATGAATATACCAAAAAACTTTCACCTGGAACAGGCAATGAAGTTGA
ACTTCAGCTGGTTTTTGATGCACTTGAGTTAGGTTCTGTCTGCAACAAAA
CAACAGTGTCTTCTGAAAAAGTTGATTACCCCTGGCAAAAGAATGACTTA
AAAGAAGAAGAAAAAGATGTGACAACTGTTTTTGTTGACAAATATCTTGG
AAGGAGTAGCCACAATGGAGCTATAAACAAGCCTCTGTCAGATATTCAAC
CAGGAATTGATTTATGCTCTTCTAAACTTCAAGCTTCCTCAACTTTGAAG
AAATGTATAGTTGCTGTGCGGTTTGGAACCTATGAGATTACAAAACCATT
AAAAATTTCCAGCAACATTGAAATAAAGAATTTCAAAGATGAGAAAGTGA
CAGTTTCTGGCTTTAAAACAGTAAAACCAAGTTGGAAAGCATTTAAACAA
AGAACCGACTTGTTTGAAAACTTTAATCCAATTTTTGAAGACATCTCACC
AAAAGAAAGTTTGAGAAATGTTGAATATCTCGGCGAGGTTGCAAACTCTG
AGGCATGTCAAAGTCTGTGTGTGAAGATGAGTAAATGTTCCTCTTTTGTT
TACTATCCAAGCTCTGTGAAGGGATTTGAAAACCAATGTTTTGTGAGAAT
TGATGGTGTTTGGAATCCTATCAAGACAGAAGGTGTACACAGTGGCAAAA
AGGTAGATATTATTAACAGTTAGGAACATTTGGCGAGTTCCTGTACGCAG
CCGCAATCAAAAAAATCATAACGTCACTCAATAAAAAATGGCGTTCGTGT
CTTTTCGCACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAACACGCTTCGTTATGCG
CTGCGGTGGAGTGCATGACGTAACTCGCGCGGCAACTAACTCGCCTTCTG
TTGGAAGATCATATTGGGCGTTTTGGCGTTCCCACCCTCGACGCAGCGAG
CGCCTTTGTCTTTCCGCAACTCTTTCCACCATTTTAGATGGCCTTAACAA
TAGATCCAAAAGGGAGCCATAATCTTGGAAGATAATTTGTTTTGATCTCC
GGCTTTGGGAAGTAGCAATGTTTTTGGTTGTTTTCAATGGAAAACGGTAA
GAAAATGGTAAGAAACTTAAGTTTACAAGTGTCATTTAGTTTTTGCTGGC
TTATAGAATGGCAGGATCCTGGATGGTTTCCCTAACTGATTAAAAGCAAC
ATTCACCAACAATTTTAAACCCTCCCCCTCCATTGGATGTATGATAAGGC
TCTGGATAATCTAAATAGATGGATACAGTACTAAGTAATATAAAACTCCT
AAAACAGAGGAAAATGTACAAAAACATATACTAACAAAATAAGAACATGT
TAAGCAGTGTTAAGAATATTTTTAGGCTTGAAACTCAAAAAGTTAAGATC
AGCACAATAAAGAAAATACTCACTTAAGGATGAAAAAAAGAACATGCTTA
AGAACATTTTAGAGGCTTAAAAAACTTAAACTATCTTTAGTCAGCTTAAA
AAGTTTTGGATGTTTTTATAAAAAACCTGTATGTTAAAGAATTAAAAATT
GTTGTATATACAGCCTTAGGTATAGGTGAAGGCTTCTTCGTAAAAGCGAA
AGACATGTACCTATTTTTCGGATCCGGCATGCGGGAATAGTGTCAGGACC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTGTCGGTAAGT
CATTCAGTAAGTTAGAAAACATAGTAAATAACTCACACAGAACCAGAAAG
TCAGAAAAACTACGAACAAGAGACTGGAAAGTACGAAACAAGTCCAGATC
TGTCTTTCGTCTTTACGAAGAAGCCACGACCTTAGGTATATGCAAAATCC
TCATTGTATTTTCCAAAGAAAATCATCATTTTTATCAGACACAGAAAATA
GCTCCATTCAAGATCTTTTACTTGTTTTAAAAATCATTATGTTCAAGGAA
AACACTGCCATACTTTCAAAAGGAAAATCAGTATTATATACTGTATTTTC
AAAGTAAATCAGTTCTGTATTTCCACAGGAAAATCATTGATGTATTTTGG
AGAAGGTTTAATATTATTTTTCCAAGAAGAATCATCACTTTATCTGCCAA
AATCACTCCCTTGCACTTTGTCAATTTCTAAATCTGTTCAATCCGCAAAA
TAGAAGTGCTCTTGAAATTACATCATGGCAATTCGAATACAATTTTATAT
ACAGTACTTCAATCGTTATTTTAGCTATTATCCATTCTGCTTGAGTAACT
TGCTACATTGCATTGCAATTCATTTGATAAATAATAAAACAAAGGAATTA
TAGAATTTTTGATTTTCTAAGTGATTTGATAAATGATTAAGCCTTAATTG
ATTTTAAATTTAGGTCAACATATTTTCTGCAAATCTTGCTGAGGAAAATA
TTGACAAAGTAGATCAAGTCTTTGCATATGGTGGGCGTCTCGTTAGAGCA
AGGTTCCCAAATGCTGATCCTGTTGTTCAAGGTTTGCACACCACACCAAC
TGGATGGGTACCCAAAGCTGACAAATGGCTGCCCCCTAAGCAGTTTGATG
ATGCACTTGAAATTCACTTAGCATCACCTACAAGAAATGGTTCATTATTT
CCTGGCTTTCAAATCGGAATTGGTGGCTCTGTCAGTCAATTTGACCCACC
AAGGTCTTACTGGGGTACAAAACATCCTTTCGGAGGAGGTGGTTCCACCT
ACACTGTACCGTCAGGTCTTCAATATTCCGAGGATTTGGAAATTAATGGT
AGACACTGGAAAACACCTGGAACAGGAATTGTACATGCTTTTCAAAACCT
TCATTGGGAAAACTGGATTTACAAACTTGACAATCGAGATGAGGTAAATA
TTTATTTTGAAAAAACTGCTTAATTGAGATTTGTTGGTATTTAGTATTCT
GTAACGACTGTGAATGTAACTGTACAGTAACTGCACAATGTCATATGAAT
GAAAGTAAAAAAGCAGTAAGTCAATTTTCCTCAGTTAGAGATAAAGCCCA
GAGAGAAAAAGCCACATGTCACAAAATTGACTTCTCTTTTGATTTAAACA
TTTTTTTGAACAGGCTATTGACAGGACTAAGCAATCCTAGGTAAAATTGA
GCAAATTCCAAAAAAGTCCATATATAATGAACTGCTTTTGACATACCACT
ATTTAGCTCCAAAAATTGAAGAAAAAAAAACGATAAAATTCTGAATATGA
TTTTATTTGTAACTCAATTTTTTCGAAAAAAAAGGCCTTTAGGGTTTTCC
TGCCTTCACGCTACGAACTGTAAATGATTTAAAAAACCTGACTTGAATTA
AAGCACCGAAGTATTACCATCTTAACTGTTTCTCAGGAAAGTCGTACTTT
CACTTGGACATGGGGAGGTTTTCAAGGAGGCAGAGGTTCAAAGAGCGGCG
GTGAATGGTACGTTGAAAATATTTTCGAAGAACTTGATGTTGCAAATGAG
TGGTATTTTAATGAATCGCAGAAGATTTTGTATCTAATGCCAAACTCCAG
TGAAGGAAGCAATGGATTACCAGAAGAGGTATCATAATATTCTATGTTTT
AATAAATATTTTCAATTCTTTATAAAGGTTGAACAATGGAATATTTAGCA
GTGCTCAAAGAAATTCTTCTATTAGAAATTCGATAATTTTAACCAAATTA
TATGTACAAAATGATTTTGCATACGAATAAGATGTTTTGATTTAGCAAGA
ATGGCTCCAATAAGAATTATGAAAATTAAAAATAATAAAAGTTAAAAATT
GAATAATTTTAAAATTTTCTGTCTTAATGCTAGATTCAAATTCCAATGGT
AACGACTTTAGGATACATCGTTGGTTCTCAAGATAAGCCTGTTGAGAACA
TTACCATTAGTGGGATGACCTTGATGGGAACACAAACAACTTTCTTGGAG
AAATACATGGTGCCAAGTGGTGGAGATTGGACTGTTCATCGTGGTGGAGT
GTTGTACATTGAAGGCTCTGTAAACACACTTATTGAAGGTTGCACATTTC
ATTCTCCTGGTGGAAATGGTATTTTCGCTTAGTAAGGCATTGTGTTTATT
CTTTGTTCGATATATTGCTAACTAGCTTTAATTGGCTAGTCACCGTTCTA
GCTATTTTAAAGCAATTTTAGTTGCAGGAATAAAAGCTAATTATAAAAAG
GTAGAATATATTTGTTGAGTTTTACGGCTATAATATAATATATAATATAT
CAATTTTTATATCTGGTTCTTTTAATTATATAATAGCCAATACAACAGAA
ACTTGGTGATATCCCACAACACAATGTTCCGACTTGGAGATAACGGTATT
GTTCTTGTGGGTGAGTCCAGGCTAATGGATGGTAGTGTTGGGAATCAGCC
TAGAGGAACACAAATCCTTTACAACATAATCAGCGAAAATGGAATCTGGG
GGAAACAGGTAAAGTAATGCTTGAATAAGGTTTATTTATGATAATCAGTG
ATAATAAGTGTTTTCAGGTACTTTCATATGTCTGTGTCTTGCCTGAAGCT
TGCTTATACTAGGGTCCAGGGCTACGCAACTTGATCAAAGAAATCTTTCA
GATCTGCCACAATCAATGAGTAAATAATGTGTTAGAATTCTTTTGAACAC
GCAAGCATTATCAAGCCATCTAGATATCGTCACACCTTACCACATCCTTT
TTAGACGTATCCATTCGTTCAGTCAGTAGCATGTCAAACGCATTTGGAAG
GAAACATCTTTTTCAGTGGTCCAAGAGCTGGCTTGAATTTCAATGACGGA
TTTGGTGGTGGGAATAGTGTACAATCGAATCTGTTGTTCAATTTTGTGAG
AGGTAGTTCATTTAGGTCCTAAAAGACACCTTTTATTTTATATAACTTAC
CACAACCTCCCTAAATCTTTAGAGAGAATAAAGATATGGAACCTCTAAAG
TCTATTTATTTTCAAATCTGGTAGCACTATTTCAAAAATTATTGGTTGAA
TTCTAGTTGAAAAAAAAGCCAGCCTACAAGCTCTAAGTCTTCCGTCGACC
TTTTTGCTCTTAATTAAATTTGTTTCCATAGAAACGGATGATCATGGACC
AATCAACACATGGGATCGAGTTCCTTACTTAACACGAGTTGCCAATGGAT
CTACCGTCTCGTTAAATGTGAAAGAAAACACAATTTACAACAACTTCATT
ATTAATAATTATCGTTCTGTATGGCCTATTGATCATGATGATGGCACATG
TTTTTGGAGAGATACCAAAAACTTTCTCGTCTATGGTGGTATGATTAAGT
TTTATCTCTTCCCTAGCTCCTTCTTTCTTAAAGCTACTTGGGCGATGGAT
TTGAGTTAACCCTGGCTAACCTTTTTGGTTTTTCGATACTCAAAACGTTA
CTTTTCTCTCGACTTTACAGGAGAAGGGGTCAAGCAACTAGCGAGTACCA
CACCAAAAACCGGGAATTTTATTCCTTTTACAAAAAGATTCATACAAATT
CAAGTGCTTTGACGCAAATTCTACTTTTTTCAAAGTTCAAAGAGACGTCA
AAAATCGTTTGTTTTGAGCCTGGAAACGTTCGAAAACGTGGAATAGTCGT
TACTACGCAGAAATAAAGATGTGATATTTAGACTAGTCAAACTATTCAAT
CAAATTTTCAATTTTCTTTCCCATAGGCNACGGAGCCTGATTTTCGAAAA
ACATTTTTTTATTCGAACAAATTTTCAATTTTTTTCTCCATAGGTTTTAA
GAATTACTTAGGACACAACAAAATATCTCAAGATAATGTTTATGTTTATC
CTGACCGACATCCAGCCAAGGAAGCTTTCAGTAAACTCTTCTGTGCTGAT
ACACAAGGTCAAACGTTAGGTATAAACGATTGTTTATTTTATATGAGGTC
CCTGTCCCATATAATGTATTTGATGTCATTTTAATTTCTCAACAGAACTC
TTGATATTTGAGCGCATCCCAAAAATAAATTCAAATTAGCCACTTGTTTA
TTCACATAAAAACTTATGAGAAATTTATTCCGTTCTTTTTTGGGAATCGG
ACTGTTGACTGTTGGGGGTGGTCAAACCTTTGAAAAATAAAAATAATTCT
TAAAAATATCTAGATACCTCCTGGAATAATTGCAAAATTTCCAAAAAACC
TTTAAAAATTCTTTTTAAAGCGAGGGTGAACGAACTAGAATTAGTCTTTT
TTTCCCCCTGGAAGTTTTAGAATAACTATAACCCCCTGGAAAAACAAATT
AGGTCGGAAAATTCTTAAGAGATTTTATTTCACTCCATGGAAAAATGAAA
ACACTTCCATTAGACCCCATAAAAATTCTTCTTGAATGACTCCCTAGATC
TATGTTCTTTCACCTTCATGTATGGATATATAGAATGGCTCATTTTTGTA
TAAAGATGACTTTATGAATCAAGAATTTCAAGTCTCTTCGAAGGAATTTC
TGGGTACAGTGAACAAAAATTATCCAATAGTCTCTTTAAATGGACTGTAA
TCAAGGTCCGATCTTTTTGGAAATTTTTTCATAAAAGATGGCTAGATGAA
TATCAGAATTTCAGGGTTTAATAAGAATTTTTTTTATCTCTTCAAAGGAA
CTTCTGGGTACGGTGACGTTTATCAGAATAACAAATGCGTGATCGGTATT
CAGAATATTTATTCTCTTGGTAAATGTGATATCAACCATATTGATATGAC
TATTCCACATTTTGTTAACAATCAACTCTACACACCTGATGGTACTGTTA
TCATTCAATGTGGTTCCAACCAATGGAATATAACACAAGCTCAAGCACAT
GGGATAGATGTTGGAAGCAAAGTAGATAAATTACCGAATGATGATTATAT
TATTCAGTGGGGAAAAGATTTATTTGGCCTGTAGAAAAAATCAAACAAGT
TTTTTTTGATTTTTTTAAAAAGGATTTTGGCTACTGGAAAGAGATTTTTT
TGAAATTGTAAATATTTTTTAATAAATTGATTTTTCAATTTGAATTTTGA
TAATTTTGTAATGATTCAAGTAATTCAAAGGAATTTTTAGTCACCATACC
TTTAAGATGTGAATGTATATTTTTTGTAATTCTTATAATTCTTATTAATG
ACATTTTATATACGATAATGGTCGCTTACCCAAAAACCCTTCCTACAGGT
ACACTTGTAACATTTTAAAATTAGTAAGAAAATACAATGACAAAAAACAC
AATGACAAAAAACTGGGCACAGTTTAGGCATGAGACCTATGAAATTGCAC
AAAGTGTCTTGGATTGAGAAAAGTGTAGGGTATTTTTATAAGAATTCATT
TGCAAGGAT

Coding sequence (CDS) from alignment at sc0000087:498391..507999-

>TCONS_00008789 ID=TCONS_00008789|Name=TCONS_00008789|organism=Clytia hemisphaerica|type=CDS|length=2733bp|location=Sequence derived from alignment at sc0000087:498391..507999- (Clytia hemisphaerica)
ATGTCTTTCATACAATACTTTATAATTTTCATGGTCCTTGGATCTATTGT
TGAATCAAGATACAGTGAAAGCGGTTTTTACAAACAATCTTCAACAAAAG
CTTTGAATTTCAATGATGGTAAGACACTTTCTTCCTGGGATGTTGGCTTT
GACTGTAAGATTAAAAATTTGGCATATGAATATACCAAAAAACTTTCACC
TGGAACAGGCAATGAAGTTGAACTTCAGCTGGTTTTTGATGCACTTGAGT
TAGGTTCTGTCTGCAACAAAACAACAGTGTCTTCTGAAAAAGTTGATTAC
CCCTGGCAAAAGAATGACTTAAAAGAAGAAGAAAAAGATGTGACAACTGT
TTTTGTTGACAAATATCTTGGAAGGAGTAGCCACAATGGAGCTATAAACA
AGCCTCTGTCAGATATTCAACCAGGAATTGATTTATGCTCTTCTAAACTT
CAAGCTTCCTCAACTTTGAAGAAATGTATAGTTGCTGTGCGGTTTGGAAC
CTATGAGATTACAAAACCATTAAAAATTTCCAGCAACATTGAAATAAAGA
ATTTCAAAGATGAGAAAGTGACAGTTTCTGGCTTTAAAACAGTAAAACCA
AGTTGGAAAGCATTTAAACAAAGAACCGACTTGTTTGAAAACTTTAATCC
AATTTTTGAAGACATCTCACCAAAAGAAAGTTTGAGAAATGTTGAATATC
TCGGCGAGGTTGCAAACTCTGAGGCATGTCAAAGTCTGTGTGTGAAGATG
AGTAAATGTTCCTCTTTTGTTTACTATCCAAGCTCTGTGAAGGGATTTGA
AAACCAATGTTTTGTGAGAATTGATGGTGTTTGGAATCCTATCAAGACAG
AAGGTGTACACAGTGGCAAAAAGGTCAACATATTTTCTGCAAATCTTGCT
GAGGAAAATATTGACAAAGTAGATCAAGTCTTTGCATATGGTGGGCGTCT
CGTTAGAGCAAGGTTCCCAAATGCTGATCCTGTTGTTCAAGGTTTGCACA
CCACACCAACTGGATGGGTACCCAAAGCTGACAAATGGCTGCCCCCTAAG
CAGTTTGATGATGCACTTGAAATTCACTTAGCATCACCTACAAGAAATGG
TTCATTATTTCCTGGCTTTCAAATCGGAATTGGTGGCTCTGTCAGTCAAT
TTGACCCACCAAGGTCTTACTGGGGTACAAAACATCCTTTCGGAGGAGGT
GGTTCCACCTACACTGTACCGTCAGGTCTTCAATATTCCGAGGATTTGGA
AATTAATGGTAGACACTGGAAAACACCTGGAACAGGAATTGTACATGCTT
TTCAAAACCTTCATTGGGAAAACTGGATTTACAAACTTGACAATCGAGAT
GAGGAAAGTCGTACTTTCACTTGGACATGGGGAGGTTTTCAAGGAGGCAG
AGGTTCAAAGAGCGGCGGTGAATGGTACGTTGAAAATATTTTCGAAGAAC
TTGATGTTGCAAATGAGTGGTATTTTAATGAATCGCAGAAGATTTTGTAT
CTAATGCCAAACTCCAGTGAAGGAAGCAATGGATTACCAGAAGAGATTCA
AATTCCAATGGTAACGACTTTAGGATACATCGTTGGTTCTCAAGATAAGC
CTGTTGAGAACATTACCATTAGTGGGATGACCTTGATGGGAACACAAACA
ACTTTCTTGGAGAAATACATGGTGCCAAGTGGTGGAGATTGGACTGTTCA
TCGTGGTGGAGTGTTGTACATTGAAGGCTCTGTAAACACACTTATTGAAG
GTTGCACATTTCATTCTCCTGGTGGAAATGGTATTTTCGCTTACCAATAC
AACAGAAACTTGGTGATATCCCACAACACAATGTTCCGACTTGGAGATAA
CGGTATTGTTCTTGTGGGTGAGTCCAGGCTAATGGATGGTAGTGTTGGGA
ATCAGCCTAGAGGAACACAAATCCTTTACAACATAATCAGCGAAAATGGA
ATCTGGGGGAAACAGACGTATCCATTCGTTCAGTCAGTAGCATGTCAAAC
GCATTTGGAAGGAAACATCTTTTTCAGTGGTCCAAGAGCTGGCTTGAATT
TCAATGACGGATTTGGTGGTGGGAATAGTGTACAATCGAATCTGTTGTTC
AATTTTGTGAGAGAAACGGATGATCATGGACCAATCAACACATGGGATCG
AGTTCCTTACTTAACACGAGTTGCCAATGGATCTACCGTCTCGTTAAATG
TGAAAGAAAACACAATTTACAACAACTTCATTATTAATAATTATCGTTCT
GTATGGCCTATTGATCATGATGATGGCACATGTTTTTGGAGAGATACCAA
AAACTTTCTCGTCTATGGTGGTTTTAAGAATTACTTAGGACACAACAAAA
TATCTCAAGATAATGTTTATGTTTATCCTGACCGACATCCAGCCAAGGAA
GCTTTCAGTAAACTCTTCTGTGCTGATACACAAGGTCAAACGTTAGGAAC
TTCTGGGTACGGTGACGTTTATCAGAATAACAAATGCGTGATCGGTATTC
AGAATATTTATTCTCTTGGTAAATGTGATATCAACCATATTGATATGACT
ATTCCACATTTTGTTAACAATCAACTCTACACACCTGATGGTACTGTTAT
CATTCAATGTGGTTCCAACCAATGGAATATAACACAAGCTCAAGCACATG
GGATAGATGTTGGAAGCAAAGTAGATAAATTACCGAATGATGATTATATT
ATTCAGTGGGGAAAAGATTTATTTGGCCTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004925XLOC_004925Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008789-exon-sc0000087-1575043694:506498..507999TCONS_00008789-exon-sc0000087-1575043694:506498..507999Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1575043694:502807..503286TCONS_00008789-exon-sc0000087-1575043694:502807..503286Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1575043694:502122..502313TCONS_00008789-exon-sc0000087-1575043694:502122..502313Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1575043694:501619..501866TCONS_00008789-exon-sc0000087-1575043694:501619..501866Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1575043694:501242..501413TCONS_00008789-exon-sc0000087-1575043694:501242..501413Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1575043694:500848..500995TCONS_00008789-exon-sc0000087-1575043694:500848..500995Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1575043694:500412..500618TCONS_00008789-exon-sc0000087-1575043694:500412..500618Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1575043694:499831..499956TCONS_00008789-exon-sc0000087-1575043694:499831..499956Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1575043694:498391..499102TCONS_00008789-exon-sc0000087-1575043694:498391..499102Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1510915933:506498..507999TCONS_00008789-exon-sc0000087-1510915933:506498..507999Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1510915933:502807..503286TCONS_00008789-exon-sc0000087-1510915933:502807..503286Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1510915933:502122..502313TCONS_00008789-exon-sc0000087-1510915933:502122..502313Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1510915933:501619..501866TCONS_00008789-exon-sc0000087-1510915933:501619..501866Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1510915933:501242..501413TCONS_00008789-exon-sc0000087-1510915933:501242..501413Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1510915933:500848..500995TCONS_00008789-exon-sc0000087-1510915933:500848..500995Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1510915933:500412..500618TCONS_00008789-exon-sc0000087-1510915933:500412..500618Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1510915933:499831..499956TCONS_00008789-exon-sc0000087-1510915933:499831..499956Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1510915933:498391..499102TCONS_00008789-exon-sc0000087-1510915933:498391..499102Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1491911889:506498..507999TCONS_00008789-exon-sc0000087-1491911889:506498..507999Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1491911889:502807..503286TCONS_00008789-exon-sc0000087-1491911889:502807..503286Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1491911889:502122..502313TCONS_00008789-exon-sc0000087-1491911889:502122..502313Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1491911889:501619..501866TCONS_00008789-exon-sc0000087-1491911889:501619..501866Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1491911889:501242..501413TCONS_00008789-exon-sc0000087-1491911889:501242..501413Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1491911889:500848..500995TCONS_00008789-exon-sc0000087-1491911889:500848..500995Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1491911889:500412..500618TCONS_00008789-exon-sc0000087-1491911889:500412..500618Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1491911889:499831..499956TCONS_00008789-exon-sc0000087-1491911889:499831..499956Clytia hemisphaericaexon
TCONS_00008789-exon-sc0000087-1491911889:498391..499102TCONS_00008789-exon-sc0000087-1491911889:498391..499102Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008789-proteinTCONS_00008789-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:498391..507999 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.33455	4.9603	2.52604	2.39445	34.9668	25.4757	20.9959	22.0549	17.9729	18.9298	16.7463	13.8347	14.165	13.3819	25.8321	26.6463	22.4423	20.6299	12.5115	15.7726	16.4799	16.4554	19.4977	23.194	20.6743	22.2613	9.29977	7.79197	47.1804	42.0256
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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