TCONS_00008793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008793
Unique NameTCONS_00008793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008793 ID=TCONS_00008793|Name=TCONS_00008793|organism=Clytia hemisphaerica|type=transcript|length=550bp
ataaaatacatTACAGAGCTTAAGGAGCTAAGTTCTTTGTTGAGAGCTTA
CAGCAGTAAATTTTGGAGAGGAACCAAGGATAAATACTTGGTAAAAATGA
GGTTGTGTATTTTCTTATCCGTCATCTACTGCTTGTTTTTCCTAAACTTC
ATAATCGCAGAAGAGAACCTACTTCCTCGCTTTGGAACAGACTATTATTT
TGAGAAGACATTGTATAATTGGAACGATGCTGAGGTTAGATGCCAATGGC
GAGGTGGACATCTCTTTGTACCCAAAGATTTATCGGAATGGAATCTGGTT
TATCAGACAGCTAAACAGAAAGGAATACACGACTTTTGGCTTGGACTAAA
CGACAAACAGACAGAAGGACAATTTATTGCTGTAGATGGTGCTACTTTAT
TCTACGAAAACTGGACAGCTGGTGAACCAAATAATTATAACAATGAAGAT
TGTGCTCATTCTCGGTACGATGGGACCTGGAATGATCACCAATGCTTGAC
CGCTAAATTTGCGTCCGTATGTAAAATGCCATTCCATGTCGATAtgattg
Run BLAST on NCBI

protein sequence of TCONS_00008793-protein

>TCONS_00008793-protein ID=TCONS_00008793-protein|Name=TCONS_00008793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
IKYITELKELSSLLRAYSSKFWRGTKDKYLVKMRLCIFLSVIYCLFFLNF
IIAEENLLPRFGTDYYFEKTLYNWNDAEVRCQWRGGHLFVPKDLSEWNLV
YQTAKQKGIHDFWLGLNDKQTEGQFIAVDGATLFYENWTAGEPNNYNNED
CAHSRYDGTWNDHQCLTAKFASVCKMPFHVDMI
Run BLAST on NCBI

transcript from alignment at sc0000087:587875..590134-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008793 ID=TCONS_00008793|Name=TCONS_00008793|organism=Clytia hemisphaerica|type=transcript|length=2260bp|location=Sequence derived from alignment at sc0000087:587875..590134- (Clytia hemisphaerica)
ATAAAATACATTACAGAGCTTAAGGAGCTAAGTTCTTTGTTGAGAGCTTA
CAGCAGTAAATTTTGGAGAGGAACCAAGGATAAATACTTGGTAAAAATGA
GGTTGTGTATTTTCTTATCCGTCATCTACTGCTTGTTTTTCCTAAACTTC
ATAATCGCAGGTAAGATTTGGTTTATGTGATTATGTAATTATGTTGGTCC
GCATCTTGTTTTTTAAATGTGGAGGATATATTGATTTAAGATACGCAACC
ATTTTTTGCATCGAGAGATAATATAGTTCAATGTTTAATGTCAGTGTATT
TGAAAATCCCTTATAAACAGTTGAGGGGTCATATAACCAATTAGTAACCG
TGAAAAATGCTTACTTGTGCAACTCATTTTTTAGAAGAGAACCTACTTCC
TCGCTTTGGAACAGACTATTATTTTGAGAAGACATTGTATAATTGGAACG
ATGCTGAGGTTAGATGCCAATGGCGAGGTGGACATCTCTTTGTACCCAAA
GATTTATCGGAATGGAATCTGGTTTATCAGACAGCTAAACAGTAAGTATC
GTATATCTCCTTTCGGTATATAGTTGGTTAGCAATGATTCTATAAAGGAC
TTCTATTCTTGGTTGCCGGGATCCTGTAATATGTGCGACTTTTGTAGAGG
ACTGTGATACAGACCCCCTTCTCACAGACCCACTGGGATCCCTTCCCATT
AGGAAAATTGGCCAAAATATCGTCATGGTCAGTTATTTTTAACCCCACTG
GCTGAAAAAGATTCTAGCGGGTCTTTGAGAACGGGTTGTTTCGATATACA
GCTGGTCAGCAGTGATTCTATAAAGAACTCCATTCTAAGTTGCTGATATC
CTCTAACAGATTCGTGTTTCTGTAATATATGTGACTTTGAGGTCTGTGAT
TACTCATATCTTAACTCATATAATGGTATTGGTAAATGCTTCATTGTAAA
AATGGCACCTTAACCTCTCTTGAAAAGAGCTTATCTCTCAAATGTTCTTC
CTGCAAAGAGAGGGGAGGAGGAACGTAGGGCAGGGTGGAGGATAAAACCA
CCATAGGAGGCACCCTTTTGTAGGACTGAACGTTATCGTGCCTCTTCTTT
TCTTTTTTGCATCAATGAATGGAATAACCTGGGCGATAATATACGGAATC
TTCCTTCTATCTCATTATTTAAACAAGCAATTCTTAAGTATTTTAGACCT
TGCGCTAACTCAATTTTCAGAGTTGCTGACAACGATGGCGTGGTTCTTCT
TAACCGATTGAGGGTTGGTTTCAGTCATCTTCGGGACCACAAATTTAGAC
ATAACTTTGCAGACACAATCGACCCCTTCTGCAACTGTCGAAGTAATTCT
TTAGAAATGACACAGCATTTCCTAATGCATTGCACTGATTACTCCAATGA
CAGACTTGTAATGTTTGACAGCCTTCTACAACTTGACATAACCTTGTTTC
CATTTAATTCCAAAACATTGTGTAGAGTACTTTTTTATGGCGACCCCGAT
TTTAGCATTGTCCAAAATCATGATATATTGAACATAACGATAAAATTTAT
CCGTGATGCTGGACGTTTTGAGGGACCGTTATTCTAGTCTTTTGCTCTCC
TAGTTCTTTGTTTTTCCATTTTGTTAATAATTATCCTCTGTAGTTAGTTT
TTTTAGTCATTACTGCGCTCTATTGTTTAGCTTATTTGGGGCTCCTTCCT
CCTGCCGGTATGATCTGTGGTCCTTTTGCGGGAGGCTAGGAACTTTTAGA
TTTGTAATACCTAAAAAAAAAAAAAAAAAAAAAACAGAGTGCCTCCCTCT
AATAAATGCTGCGTTCTAAAGGCCACACCGCATCCCAAAAAACAATGCTT
ATCGGAATCTTACAGATACTCACTAGAAATTCTTGACCTTTAATATCTGT
TTTTTGCTTAAACCTAAACCAACTCTTAACAGTGCTGTAGTGGCAGCTCC
TTGTACCCAATTTAGTCTTCCCCAGGTACCACGATGTTTTTTTAGGTAAT
ACGGTATTTCTTATTGATCATCATTAGGAAAGGAATACACGACTTTTGGC
TTGGACTAAACGACAAACAGACAGAAGGACAATTTATTGCTGTAGATGGT
GCTACTTTATTCTACGAAAACTGGACAGCTGGTGAACCAAATAATTATAA
CAATGAAGATTGTGCTCATTCTCGGTACGATGGGACCTGGAATGATCACC
AATGCTTGACCGCTAAATTTGCGTCCGTATGTAAAATGCCATTCCATGTC
GATATGATTG

Coding sequence (CDS) from alignment at sc0000087:587875..590134-

>TCONS_00008793 ID=TCONS_00008793|Name=TCONS_00008793|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0000087:587875..590134- (Clytia hemisphaerica)
ATAAAATACATTACAGAGCTTAAGGAGCTAAGTTCTTTGTTGAGAGCTTA
CAGCAGTAAATTTTGGAGAGGAACCAAGGATAAATACTTGGTAAAAATGA
GGTTGTGTATTTTCTTATCCGTCATCTACTGCTTGTTTTTCCTAAACTTC
ATAATCGCAGAAGAGAACCTACTTCCTCGCTTTGGAACAGACTATTATTT
TGAGAAGACATTGTATAATTGGAACGATGCTGAGGTTAGATGCCAATGGC
GAGGTGGACATCTCTTTGTACCCAAAGATTTATCGGAATGGAATCTGGTT
TATCAGACAGCTAAACAGAAAGGAATACACGACTTTTGGCTTGGACTAAA
CGACAAACAGACAGAAGGACAATTTATTGCTGTAGATGGTGCTACTTTAT
TCTACGAAAACTGGACAGCTGGTGAACCAAATAATTATAACAATGAAGAT
TGTGCTCATTCTCGGTACGATGGGACCTGGAATGATCACCAATGCTTGAC
CGCTAAATTTGCGTCCGTATGTAAAATGCCATTCCATGTCGATATGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004928XLOC_004928Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008793-proteinTCONS_00008793-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008793-exon-sc0000087-1575043694:589975..590134TCONS_00008793-exon-sc0000087-1575043694:589975..590134Clytia hemisphaericaexon
TCONS_00008793-exon-sc0000087-1575043694:589594..589750TCONS_00008793-exon-sc0000087-1575043694:589594..589750Clytia hemisphaericaexon
TCONS_00008793-exon-sc0000087-1575043694:587875..588107TCONS_00008793-exon-sc0000087-1575043694:587875..588107Clytia hemisphaericaexon
TCONS_00008793-exon-sc0000087-1510915933:589975..590134TCONS_00008793-exon-sc0000087-1510915933:589975..590134Clytia hemisphaericaexon
TCONS_00008793-exon-sc0000087-1510915933:589594..589750TCONS_00008793-exon-sc0000087-1510915933:589594..589750Clytia hemisphaericaexon
TCONS_00008793-exon-sc0000087-1510915933:587875..588107TCONS_00008793-exon-sc0000087-1510915933:587875..588107Clytia hemisphaericaexon
TCONS_00008793-exon-sc0000087-1491911889:589975..590134TCONS_00008793-exon-sc0000087-1491911889:589975..590134Clytia hemisphaericaexon
TCONS_00008793-exon-sc0000087-1491911889:589594..589750TCONS_00008793-exon-sc0000087-1491911889:589594..589750Clytia hemisphaericaexon
TCONS_00008793-exon-sc0000087-1491911889:587875..588107TCONS_00008793-exon-sc0000087-1491911889:587875..588107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:587875..590134 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.375674	0	0.108597	0	0.138581	20.4637	26.4889	0.982959	1.82412	4.55983	7.07666	17.4707	37.7618	1.50888	1.17757	0	0	0.893628	1.49539	0	0	0.115477	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
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BLAST of TCONS_00008793 vs. Swiss-Prot (Human)
Match: CL17A (C-type lectin domain family 17, member A OS=Homo sapiens GN=CLEC17A PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-17
Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:  151 IIAEENLLPRFGTDYYFEKTLYNWNDAEVRCQWRGGHLFVPKDLSEWNLVYQTAKQKGIHDFWLGLNDKQTEGQFIAVDGATLFYENWTAGEPNNYNNEDCAHSRYDGTWNDHQC 495
            I   E  LP  G  YYF  +  +W++A + CQ    HL +    +E N V +      +  +WLGLND+  EG +  +DG+ +    W   EPNN ++EDCA     GTWND  C
Sbjct:  252 ITCPEGWLPFEGKCYYFSPSTKSWDEARMFCQENYSHLVIINSFAEHNFVAKAHGSPRV--YWLGLNDRAQEGDWRWLDGSPVTLSFWEPEEPNNIHDEDCATMNKGGTWNDLSC 364
The following BLAST results are available for this feature:
BLAST of TCONS_00008793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CL17A1.069e-1736.52C-type lectin domain family 17, member A OS=Homo s... [more]
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