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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008803 ID=TCONS_00008803|Name=TCONS_00008803|organism=Clytia hemisphaerica|type=transcript|length=2682bp
GTCTCCATTGGAGCGAATGAAATACTGAAAAGTCATCTTCACCGAGAAAA
TTAATGACAATAAGGGCTGCAAGCCGCGAAAGCACtaacaaattttaaaa
agttcagtttaaaaaacataattttttaattaatgtACTTTCTGGGTTAT
CCTCTTGAACAATTTACCTCGAGTGCCTGGTACTCGCATCAATGACCAGA
AAAGATGTTGTTCGGCCAGTCCGCTCCTTCACTGCTTGAATCTGAAGTTT
CCTGGCATAatatttcgtgttttttctcGGCCGAAAGATGATCAGATACA
TCTTATAGCCATAcatgaataaataaatcaacAAATTATTCCCAGCCACA
AATAAAATTTGCACGACTGAGACATCAAGTTGATTCTTTTGGAAATGACT
GATAGGATACATTACGGTGAAGGAGATTGTGGCAGCAAATGAACCGATTG
CAATACTGGTTGCTTCACTCAGATATCCTGGCAAGTGACGATATTGGTAA
GCTCGGTAACTGCAtgctaaatgtaaacaaatggtGTATGCTATCAATAC
ACTGAAGTGCAAATTGCTGTCGCAGTAAAATATTTGTTCCTTTCTTTCGA
TGTTTATCGAAGTTACGACCTCTGGtaacttttgatacatcaatAATACT
AAAATACCTAATCCAAGAAATGTATTGATCATAAAAATCGAGATTTGCTG
TATTGCAGTTCTCTGTACATCTCGACCAGTAGTTCGTATATCGCTGGAGA
AAGCATTTAAAAGTTTCATACATTTGATGAAAATAAAGCTGATACTATTA
TTATAAAGCAAAACTATGATTCCAAGACGAGTTATACATTTGGCTTCAGT
TGGTTGGTCGAAATAAACCAATGGCAACACGATAGAAGTGGTTGCTAGGA
AACAGAGGTGAAGTAACGATAACTTTGAGTCTGAGAGCATAACAATAGGT
GATTTTCGATTCTTCAGGAAGACACATAAAGTGGACAATGGGAAAATGGC
TCCCATGATACACAAAGCAATTAGGATAGCACCGATTCGCCTTTCAGCTT
TCAAATAAACAGATTTCAATGGATTTATACAAGACGTTCGATCAGCGCTA
GGGACGTAGAATCCATGACATGATTGACAAGGACCGTCACCGTAGGTCGA
TTTGAATTCATCCATAGGACAGGGTTGACAAAAATATCCGACTTCCTCAT
CCCATAAAGACGAAGGGACAACTCCAAAAACTTTTCTGAATCCTGGTTGA
CATACGATGTCTGTACAATTATTTGTCAAAGATTCATTGGTTCGATTCTC
ATTGACTGGTTTAAATCCTAAGAAGTCTCCCTCTTTTGTTCTAGTGAGAT
TGGATTTCAAAATTGCTCTGTATTCTTGGTGCGACATTGAAGGAGGGCGT
TTGAATATATTGAGCGCATAAAAAAAGTAGGCAACTATGCTACTGATCTC
AAACCTATATTTCTGGTACTCTGGGTCATtgctaaagaaaaaatgaagaa
cgtCAAACTGTGTTAACATTCGAAAGATATTGAAGAAAGGAGCTCTGACG
ATATTTCCTGGCAATGTTtcgtttttaaccaaaacatCAACAGAACCAat
aattattgatttgtttgaGTAGTCCAGGAAAAATGATGGTATTTGAAAAT
CTTCGGACTTCGTTTGGAAAAAGAAGGTTGctaatcttttgtttttctcc
acATGAAGAAGCTGGTCTAGACGGTTTAAATGTGAATCATTCGAAGATTC
TATTCCTATAGCTTTGTAGCAAAtatctttttcctttttgaaatttgata
tcAATTCTTGCATAGATAATGATGTTCCACTAGATCGAAGatcaatcaaa
ataatttcattcCAATATTCACGaataactttttcaattttcatcaagTT
GAAAATAACATCGAAACCAAGTCTATCAGCATAGTTTGTCGGTAATATAA
TATCTCTGGTGAATTTGACGACAATGATATCTGTAGTGCTCAAAATGTCT
TGAGTAATTTTGAACATATGCAAAGGTACATGTAAAATAACCGTATCAAT
TTTGACATGTTTATAAGGAGTAGAGTCATTCCCTATTTCAAGATAAGAAG
TATTAGCCAGCACTTTATCGATCAGAAAGTTCAACAACACTGTCTCGTTA
TAACACATATCTAGCCCAATATAATTCATTCTTTGGCTAAATGTATAGAA
TTTCGTGACAGCTCGATTGTAAATAGCTCCTTGTTTTGTAAAGTTACTTA
CAAGCTCAGGATGGTTTTCACAAGCACTATAAATCCCGATAACGTCCAAA
GCACATATTATCGTTGGTATtgtcaacaaaaataaaaaagtcttgaaaaa
caTGCTTCCTCTCGGTATGTTAAAATTTCTTGGAATCTAATTAAGTTTTC
CTCCAAAGATATCGAAGATTTTATCGAAGACTAATAGAAACACCAGGATA
TAATTTCATATGGTCTACGACCTACTCTACGTACGACAATATTCTTTAGT
ATATTACAAAGAATATATCTTTCGAAATCTTCACTTATCCTTGATTattt
attctaattttttaatcaatcaaATTTCCATATAAATTAAGAtaatttta
aatattggaacttgatgaagaaaataatcaataatttattattttttcaa
attaatttgtttGATCTTCATCCTGAAGAAAG Run BLAST on NCBI protein sequence of TCONS_00008803-protein >TCONS_00008803-protein ID=TCONS_00008803-protein|Name=TCONS_00008803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=729bp
MFFKTFLFLLTIPTIICALDVIGIYSACENHPELVSNFTKQGAIYNRAVT
KFYTFSQRMNYIGLDMCYNETVLLNFLIDKVLANTSYLEIGNDSTPYKHV
KIDTVILHVPLHMFKITQDILSTTDIIVVKFTRDIILPTNYADRLGFDVI
FNLMKIEKVIREYWNEIILIDLRSSGTSLSMQELISNFKKEKDICYKAIG
IESSNDSHLNRLDQLLHVEKNKRLATFFFQTKSEDFQIPSFFLDYSNKSI
IIGSVDVLVKNETLPGNIVRAPFFNIFRMLTQFDVLHFFFSNDPEYQKYR
FEISSIVAYFFYALNIFKRPPSMSHQEYRAILKSNLTRTKEGDFLGFKPV
NENRTNESLTNNCTDIVCQPGFRKVFGVVPSSLWDEEVGYFCQPCPMDEF
KSTYGDGPCQSCHGFYVPSADRTSCINPLKSVYLKAERRIGAILIALCIM
GAIFPLSTLCVFLKNRKSPIVMLSDSKLSLLHLCFLATTSIVLPLVYFDQ
PTEAKCITRLGIIVLLYNNSISFIFIKCMKLLNAFSSDIRTTGRDVQRTA
IQQISIFMINTFLGLGILVLLMYQKLPEVVTSINIERKEQIFYCDSNLHF
SVLIAYTICLHLACSYRAYQYRHLPGYLSEATSIAIGSFAATISFTVMYP
ISHFQKNQLDVSVVQILFVAGNNLLIYLFMYGYKMYLIIFRPRKNTKYYA
RKLQIQAVKERTGRTTSFLVIDASTRHSR Run BLAST on NCBI transcript from alignment at sc0000087:150536..153217 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008803 ID=TCONS_00008803|Name=TCONS_00008803|organism=Clytia hemisphaerica|type=transcript|length=2682bp|location=Sequence derived from alignment at sc0000087:150536..153217 (Clytia hemisphaerica)
CTTTCTTCAGGATGAAGATCaaacaaattaatttgaaaaaataataaatt
attgattattttcttcatcaagttccaatatttaaaattaTCTTAATTTA
TATGGAAATttgattgattaaaaaattagaataaatAATCAAGGATAAGT
GAAGATTTCGAAAGATATATTCTTTGTAATATACTAAAGAATATTGTCGT
ACGTAGAGTAGGTCGTAGACCATATGAAATTATATCCTGGTGTTTCTATT
AGTCTTCGATAAAATCTTCGATATCTTTGGAGGAAAACTTAATTAGATTC
CAAGAAATTTTAACATACCGAGAGGAAGCAtgtttttcaagactttttta
tttttgttgacaATACCAACGATAATATGTGCTTTGGACGTTATCGGGAT
TTATAGTGCTTGTGAAAACCATCCTGAGCTTGTAAGTAACTTTACAAAAC
AAGGAGCTATTTACAATCGAGCTGTCACGAAATTCTATACATTTAGCCAA
AGAATGAATTATATTGGGCTAGATATGTGTTATAACGAGACAGTGTTGTT
GAACTTTCTGATCGATAAAGTGCTGGCTAATACTTCTTATCTTGAAATAG
GGAATGACTCTACTCCTTATAAACATGTCAAAATTGATACGGTTATTTTA
CATGTACCTTTGCATATGTTCAAAATTACTCAAGACATTTTGAGCACTAC
AGATATCATTGTCGTCAAATTCACCAGAGATATTATATTACCGACAAACT
ATGCTGATAGACTTGGTTTCGATGTTATTTTCAActtgatgaaaattgaa
aaagttattCGTGAATATTGgaatgaaattattttgattgatCTTCGATC
TAGTGGAACATCATTATCTATGCAAGAATTgatatcaaatttcaaaaagg
aaaaagataTTTGCTACAAAGCTATAGGAATAGAATCTTCGAATGATTCA
CATTTAAACCGTCTAGACCAGCTTCTTCATgtggagaaaaacaaaagatt
agCAACCTTCTTTTTCCAAACGAAGTCCGAAGATTTTCAAATACCATCAT
TTTTCCTGGACTACtcaaacaaatcaataattatTGGTTCTGTTGatgtt
ttggttaaaaacgaAACATTGCCAGGAAATATCGTCAGAGCTCCTTTCTT
CAATATCTTTCGAATGTTAACACAGTTTGacgttcttcattttttcttta
gcaATGACCCAGAGTACCAGAAATATAGGTTTGAGATCAGTAGCATAGTT
GCCTACTTTTTTTATGCGCTCAATATATTCAAACGCCCTCCTTCAATGTC
GCACCAAGAATACAGAGCAATTTTGAAATCCAATCTCACTAGAACAAAAG
AGGGAGACTTCTTAGGATTTAAACCAGTCAATGAGAATCGAACCAATGAA
TCTTTGACAAATAATTGTACAGACATCGTATGTCAACCAGGATTCAGAAA
AGTTTTTGGAGTTGTCCCTTCGTCTTTATGGGATGAGGAAGTCGGATATT
TTTGTCAACCCTGTCCTATGGATGAATTCAAATCGACCTACGGTGACGGT
CCTTGTCAATCATGTCATGGATTCTACGTCCCTAGCGCTGATCGAACGTC
TTGTATAAATCCATTGAAATCTGTTTATTTGAAAGCTGAAAGGCGAATCG
GTGCTATCCTAATTGCTTTGTGTATCATGGGAGCCATTTTCCCATTGTCC
ACTTTATGTGTCTTCCTGAAGAATCGAAAATCACCTATTGTTATGCTCTC
AGACTCAAAGTTATCGTTACTTCACCTCTGTTTCCTAGCAACCACTTCTA
TCGTGTTGCCATTGGTTTATTTCGACCAACCAACTGAAGCCAAATGTATA
ACTCGTCTTGGAATCATAGTTTTGCTTTATAATAATAGTATCAGCTTTAT
TTTCATCAAATGTATGAAACTTTTAAATGCTTTCTCCAGCGATATACGAA
CTACTGGTCGAGATGTACAGAGAACTGCAATACAGCAAATCTCGATTTTT
ATGATCAATACATTTCTTGGATTAGGTATTTTAGTATTattgatgtatca
aaagttaCCAGAGGTCGTAACTTCGATAAACATCGAAAGAAAGGAACAAA
TATTTTACTGCGACAGCAATTTGCACTTCAGTGTATTGATAGCATACacc
atttgtttacatttagcaTGCAGTTACCGAGCTTACCAATATCGTCACTT
GCCAGGATATCTGAGTGAAGCAACCAGTATTGCAATCGGTTCATTTGCTG
CCACAATCTCCTTCACCGTAATGTATCCTATCAGTCATTTCCAAAAGAAT
CAACTTGATGTCTCAGTCGTGCAAATTTTATTTGTGGCTGGGAATAATTT
gttgatttatttattcatgTATGGCTATAAGATGTATCTGATCATCTTTC
GGCCgagaaaaaacacgaaatatTATGCCAGGAAACTTCAGATTCAAGCA
GTGAAGGAGCGGACTGGCCGAACAACATCTTTTCTGGTCATTGATGCGAG
TACCAGGCACTCGAGGTAAATTGTTCAAGAGGATAACCCAGAAAGTacat
taattaaaaaattatgttttttaaactgaactttttaaaatttgttaGTG
CTTTCGCGGCTTGCAGCCCTTATTGTCATTAATTTTCTCGGTGAAGATGA
CTTTTCAGTATTTCATTCGCTCCAATGGAGAC Coding sequence (CDS) from alignment at sc0000087:150536..153217 >TCONS_00008803 ID=TCONS_00008803|Name=TCONS_00008803|organism=Clytia hemisphaerica|type=CDS|length=2190bp|location=Sequence derived from alignment at sc0000087:150536..153217 (Clytia hemisphaerica)
AtgtttttcaagacttttttatttttgttgacaATACCAACGATAATATG
TGCTTTGGACGTTATCGGGATTTATAGTGCTTGTGAAAACCATCCTGAGC
TTGTAAGTAACTTTACAAAACAAGGAGCTATTTACAATCGAGCTGTCACG
AAATTCTATACATTTAGCCAAAGAATGAATTATATTGGGCTAGATATGTG
TTATAACGAGACAGTGTTGTTGAACTTTCTGATCGATAAAGTGCTGGCTA
ATACTTCTTATCTTGAAATAGGGAATGACTCTACTCCTTATAAACATGTC
AAAATTGATACGGTTATTTTACATGTACCTTTGCATATGTTCAAAATTAC
TCAAGACATTTTGAGCACTACAGATATCATTGTCGTCAAATTCACCAGAG
ATATTATATTACCGACAAACTATGCTGATAGACTTGGTTTCGATGTTATT
TTCAActtgatgaaaattgaaaaagttattCGTGAATATTGgaatgaaat
tattttgattgatCTTCGATCTAGTGGAACATCATTATCTATGCAAGAAT
TgatatcaaatttcaaaaaggaaaaagataTTTGCTACAAAGCTATAGGA
ATAGAATCTTCGAATGATTCACATTTAAACCGTCTAGACCAGCTTCTTCA
TgtggagaaaaacaaaagattagCAACCTTCTTTTTCCAAACGAAGTCCG
AAGATTTTCAAATACCATCATTTTTCCTGGACTACtcaaacaaatcaata
attatTGGTTCTGTTGatgttttggttaaaaacgaAACATTGCCAGGAAA
TATCGTCAGAGCTCCTTTCTTCAATATCTTTCGAATGTTAACACAGTTTG
acgttcttcattttttctttagcaATGACCCAGAGTACCAGAAATATAGG
TTTGAGATCAGTAGCATAGTTGCCTACTTTTTTTATGCGCTCAATATATT
CAAACGCCCTCCTTCAATGTCGCACCAAGAATACAGAGCAATTTTGAAAT
CCAATCTCACTAGAACAAAAGAGGGAGACTTCTTAGGATTTAAACCAGTC
AATGAGAATCGAACCAATGAATCTTTGACAAATAATTGTACAGACATCGT
ATGTCAACCAGGATTCAGAAAAGTTTTTGGAGTTGTCCCTTCGTCTTTAT
GGGATGAGGAAGTCGGATATTTTTGTCAACCCTGTCCTATGGATGAATTC
AAATCGACCTACGGTGACGGTCCTTGTCAATCATGTCATGGATTCTACGT
CCCTAGCGCTGATCGAACGTCTTGTATAAATCCATTGAAATCTGTTTATT
TGAAAGCTGAAAGGCGAATCGGTGCTATCCTAATTGCTTTGTGTATCATG
GGAGCCATTTTCCCATTGTCCACTTTATGTGTCTTCCTGAAGAATCGAAA
ATCACCTATTGTTATGCTCTCAGACTCAAAGTTATCGTTACTTCACCTCT
GTTTCCTAGCAACCACTTCTATCGTGTTGCCATTGGTTTATTTCGACCAA
CCAACTGAAGCCAAATGTATAACTCGTCTTGGAATCATAGTTTTGCTTTA
TAATAATAGTATCAGCTTTATTTTCATCAAATGTATGAAACTTTTAAATG
CTTTCTCCAGCGATATACGAACTACTGGTCGAGATGTACAGAGAACTGCA
ATACAGCAAATCTCGATTTTTATGATCAATACATTTCTTGGATTAGGTAT
TTTAGTATTattgatgtatcaaaagttaCCAGAGGTCGTAACTTCGATAA
ACATCGAAAGAAAGGAACAAATATTTTACTGCGACAGCAATTTGCACTTC
AGTGTATTGATAGCATACaccatttgtttacatttagcaTGCAGTTACCG
AGCTTACCAATATCGTCACTTGCCAGGATATCTGAGTGAAGCAACCAGTA
TTGCAATCGGTTCATTTGCTGCCACAATCTCCTTCACCGTAATGTATCCT
ATCAGTCATTTCCAAAAGAATCAACTTGATGTCTCAGTCGTGCAAATTTT
ATTTGTGGCTGGGAATAATTTgttgatttatttattcatgTATGGCTATA
AGATGTATCTGATCATCTTTCGGCCgagaaaaaacacgaaatatTATGCC
AGGAAACTTCAGATTCAAGCAGTGAAGGAGCGGACTGGCCGAACAACATC
TTTTCTGGTCATTGATGCGAGTACCAGGCACTCGAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008803-exon-sc0000087-1491911889:150536..153217 | TCONS_00008803-exon-sc0000087-1491911889:150536..153217 | Clytia hemisphaerica | exon |
| TCONS_00008803-exon-sc0000087-1510915933:150536..153217 | TCONS_00008803-exon-sc0000087-1510915933:150536..153217 | Clytia hemisphaerica | exon |
| TCONS_00008803-exon-sc0000087-1575043694:150536..153217 | TCONS_00008803-exon-sc0000087-1575043694:150536..153217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:150536..153217 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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