TCONS_00008812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008812
Unique NameTCONS_00008812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008812 ID=TCONS_00008812|Name=TCONS_00008812|organism=Clytia hemisphaerica|type=transcript|length=657bp
ATTTGTTTGTGCTTCACCAAGAAAGATTCTTGACATTAGCTTTTGTAAAG
CTCATTGGAAAACATTTGAGCgccaaaaaatgatgaactaaGGAGACAGT
CGTTTACAATATACAGAATCATtatgtcaaaaaataaatctCTTTTCACG
TAAAACCTATTAGAGGATAATGACCCACAGAGCACATTAAGCTGTATAAT
TAAACCTGACCATAGTCATTAGTCAATGTAAAAATTTGTCAAGAATATAT
AATGAGAGATCAATTTGATAGGAATTTGGATTATAATTACAGTAAAATTT
TCACCTTGTCCAAAAAAAACCAGAGATGTAAAAGTACGAACATTGGACAC
CAAGAATTTAGAGccataattatgaaaattacaCTAAATGACGTAAAAAT
TGACCCTCGGGAATTTATCATGAATTTGTTTACTTCTGACGAAAATATAA
AGATTTACAATTTGCATGTAAACATTTTAGTGTAAAGTGTGTAGGCCATG
TCTCATTAACAATTCGCCCACCTTCATTCAGAGATTCGTAGAAAAAAAGC
TGTTCATTTTAGATCAACTAGTACAGTATTATAGGATAAATTTTTGATTG
GCTCTCTCTCTCTCCTCGCATACAAAATCTCACGTCGCTCAAAGTGTTTA
CAAAATN
Run BLAST on NCBI

transcript from alignment at sc0000087:482869..483525

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008812 ID=TCONS_00008812|Name=TCONS_00008812|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at sc0000087:482869..483525 (Clytia hemisphaerica)
NATTTTGTAAACACTTTGAGCGACGTGAGATTTTGTATGCGAGGAGAGAG
AGAGAGCCAATCAAAAATTTATCCTATAATACTGTACTAGTTGATCTAAA
ATGAACAGCTTTTTTTCTACGAATCTCTGAATGAAGGTGGGCGAATTGTT
AATGAGACATGGCCTACACACTTTACACTAAAATGTTTACATGCAAATTG
TAAATCTTTATATTTTCGTCAGAAGTAAACAAATTCATGATAAATTCCCG
AGGGTCAATTTTTACGTCATTTAGtgtaattttcataattatggCTCTAA
ATTCTTGGTGTCCAATGTTCGTACTTTTACATCTCTGGTTTTTTTTGGAC
AAGGTGAAAATTTTACTGTAATTATAATCCAAATTCCTATCAAATTGATC
TCTCATTATATATTCTTGACAAATTTTTACATTGACTAATGACTATGGTC
AGGTTTAATTATACAGCTTAATGTGCTCTGTGGGTCATTATCCTCTAATA
GGTTTTACGTGAAAAGagatttattttttgacataATGATTCTGTATATT
GTAAACGACTGTCTCCttagttcatcattttttggcGCTCAAATGTTTTC
CAATGAGCTTTACAAAAGCTAATGTCAAGAATCTTTCTTGGTGAAGCACA
AACAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004947XLOC_004947Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008812-exon-sc0000087-1491911889:482869..483525TCONS_00008812-exon-sc0000087-1491911889:482869..483525Clytia hemisphaericaexon
TCONS_00008812-exon-sc0000087-1510915933:482869..483525TCONS_00008812-exon-sc0000087-1510915933:482869..483525Clytia hemisphaericaexon
TCONS_00008812-exon-sc0000087-1575043694:482869..483525TCONS_00008812-exon-sc0000087-1575043694:482869..483525Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:482869..483525 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0788107	0	0	0	0	0	0	0.214404	0.260638	0.324286	0.49493	0.443366	1.16782	0.234707	0.100982	0.0643111	0.184604	0	0	0.280313	0.545327	0.096452	0.441955	0	0	0	0.144803	0.0994245	0.307886
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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