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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008823 ID=TCONS_00008823|Name=TCONS_00008823|organism=Clytia hemisphaerica|type=transcript|length=1315bp
ACCACATCGATTTTTTTTGACAACTGGAAAACTTGCACAAAGAAAAGAGA
AGAAGATGCCAACGAGATCGATGAAATGGAAGAACTACAAGCAGGAAACA
ACCAAAGAAAACGTAAAGAGATTTCCACTTCATCAATCTTCAATATTTTG
GTCtctttttttcagttaaaaGCTTTGATGACAGTTCAGAGCAATGAGAA
AACATTAATCGATAAACTTATGAACATGGATATTATGGTTAAAAGCAGTG
AAGCTTTTGAAGCACTTTGTCCTTTCAGGGGGTTTAATGTTGTATGGCGA
GAGGTTTTAAACGGATATACGATCCCATTTTTATTGTTAATGACTATTGC
AGCTTTACACTTGATTGTAAAACTCTTGAAACACTTTCGACCATCAAGTT
TAAGATTAACATGGTTGATGACGAGATTTTGTGTTGGGTATTATATCATC
ATCGCTTTTTGCTACAAGAATATCTGCCGAACAGTCTTTCAGCTTTTGAA
CTGCAAAACAATGAATGAAGTAACATTCTTATACATTGACGGTACTGttg
aatgtttttctttgtgGCAGGTGGCAAATATGTTATTCTTGGTATGTTGG
GTTGTTCCTTTCCCATTTGCAGTCGTTTTGGGCTACTAcctctttaaaaa
caaaaagatttctgTGACGACGTTTCTCATATTTTTAATGTTCCCAATGT
TTTGTATTGTGAGAACTTGTTTCTCAAGATGGAAAAGAACTGGCGAGACT
GACAGGAGTGATTTCATTGGAAACAGATTCACAGAAATATTCGAAGAACC
CTACAGAGACAAATTCTTTTGGTGGGAATCTTGGCGACTTATCGAACGTT
TTATTGTTTCTGGCATAGCAGTATTTCTGACGAACCCTATCTATCGCATC
TTATANAATATTTGAAGAGCCCTACAGAGACAAATTCTTTTGGTGGGAAT
CTTGGCGACTTATCGAACGTTTTATTGTTTCTGGCATAGCAGTATTTATG
ACGAACCCGATCTATCGCATCTTATACCTGACCCCCGTCTTTGTTTCCTT
AACGTATTTCCACTTCCGAATGAATCCATATAAACGTTCGATGTATATTC
TAAAACGATTAGATACGGTTTCCTGGTTTTGTTTATTCATTCATTTGTTC
ATCAACGGAATGCGAGCTGTTGTTTACATTTATGATGTACCTGATATCGA
TTTTATAAGCCATGCATTAGAAGCTGCTAATATATTGGAGGACTTATTTT
CTCCACTCTGGTATCTTATTATTTCATTCATTCTTAAGAAGTTgtgtgaa
atatttttagatttt Run BLAST on NCBI transcript from alignment at sc0000088:102522..112239+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008823 ID=TCONS_00008823|Name=TCONS_00008823|organism=Clytia hemisphaerica|type=transcript|length=9718bp|location=Sequence derived from alignment at sc0000088:102522..112239+ (Clytia hemisphaerica)
ACCACATCGATTTTTTTTGACAACTGGTAAGTTTCGAACAAGATTTTTTA
TTGGTATTTTTTGTGCTAGTAGACTTATGCTAgtctttatataaaaaatg
gtTTCTTGTCAACCGGCAACCCTAATCGAAACCTGAAATCctttaaaata
ttgttttcgaataataaacattttttggttAGAATATTGCAACTAGAGAA
GGACTATCGCTAAGAACTACATCTCATAAAATTGCTGACAAACAAAACCC
AAGAATATGTtaggggtagaatctaccacgttGACGTTCTTTTTctgaga
aaatcttttaaagaatttgaaactttcagaattttaatgaaatctgattg
agagtacttgtgcaaattCTTAGGGTCAAAGATTGTCTAGATCAGGCTtg
atgactttattgtgaaaacATGACATAAAAACCAGCATAAACCGCTTAAC
ACTCGCAATTTCAAAATGCTAATAACTTCTGAAATAATTAAGCAATCATA
TTCAAATCTTGACGCTTCAAAATATTACTCATCTTCAAAAACAcagcaat
tatgttaaagagcTGTATTTTATCTTTCAGGATCCTCAAACAGAATCttt
aaacccgggggggggggggccctttggcaaaattgggtacagggacgtgc
cgctggtcaggttTCCCTTTTTACGAGTTCCAAATTTACTAGTTTTTAAG
ATGTGTATCTGAAAGTcgacttttggtaatttttgacaattttctgGGGA
ATTTTTCGTCTACCTTTAGtcattttggtcaatttttaggttgaaaatgg
aaaacattttcaatatttattttctgaCAGGGTCTCAAATTTACCAAATA
TTCATATCTAACAGGATCCATTCTTCAAATTCCAGCGGCATGTCTCCGTT
TGCCGTCGATGTCAGTGCTCCTGGTTCTgcgaaaaacatctttttaaacC
ATACATTTGGGCtcttttccgacaggtggaaattttgtgatgacgtcatc
gatttttATTGGATGGAAGTCATCGATTTTTTTCCTTCTGGAAGTTTGTG
TCATGATAGAGAACACCTGTACCAATTTTCGTGTCAATAGCTTTTCTAGA
TCGGTAAAAGAAgatggtagattctacccctgCTGGGGctacaaaaatag
aaaatatctTTGGGTTAATATGCTTAAGTGAAAAGAACACAAGAAAGCCT
AAGCAGCTTAAAGGCCAAGCATTGTTGGTAGTGTCAACAAATTTTCCGTG
GCAGGGTCGCCATACAACTTAATATACACGAGTGAATTTTCTTTCGATAA
GTAGAGCAGCTCGAGTCAGGCAAGCAATAGAGAGttaatttttctgaaat
aaGATTCGACAATATCAATCGGAGGTATTAATGGTTtgtggtttttattt
ttttacgcATGCACACAATAGTAATTCatataattcaatttttagccTGG
ATTTGTCAATTGATAATTGCGCGcataggccccgacaaagtcaaATCTTT
TCGAATAGTTGTTTTAAAGGCCCATTCCACTGCACGCTGGGCCAATTATG
AATTTCTTTCCGATTGAAATTCAGATGATCTAAAGTCATTTTATCCTTCC
TTTACAGACACGTTTGCAAGCTCCACAACAGTGTACGTTTCACCGAAAGG
GAGAGATGAAGAAAATTGCGGCTTGAAgcacaaaaaatgtcaaactaTTG
ATCATGTATTGAAAGAATCTAAAAGTAGCAATATGAAGTTGATTTTAGAG
AACTCTCAGACTCAAAGCATTGTTTATCACACTCAAGGAATGTTACGCCC
TGATAGTGATTATTTTCAGTTACGAATTACAAAAGAAAGCCAAAATGGAA
CGAACCCGACTATATATGGAAATGAATTACCCTTCATTCAACCCAAAGGT
GCTTTCAGTCTATCTATTGATCAAGTCAACCTTCAGAATCTCGTAATTGT
TAACTCTACGTATCAAAACTCAAGCACGGCCATATCTTTTCGAAACTTGA
TTATTAGAACAGAGATAACAGGAGATTTCATATCTACCACCAACACAAAC
AGCAATCTTAACGTCACTGTACAATCTTGTGTTTTGATATCACCGACCAG
GAATGCGTGGTTAAATATATCAATGAAAAAAGCGACTTCGTTTAAATCAA
TAGTCAAATTAACCAACAACACCATTCGAGGAGGGCGTTTTATCATAATA
AACGTTCAAGTACTTGATTTTTCacaaacaaaaatacaaaatatggTCAC
TGATATCTTAAACGGGAACACGTTTCAATCCTTACCTTTCATATACTTAA
AGCATATCAAAAACGCAGTTTTCCGTAGCAAAACTACGATAAAGAATTCA
ACATTTGAATCTTTCATACATGCATATGATTCGTTTATAAGGATGCAAAA
TCTTTACTTTCATGACACAAACCTCGAATATGGAATTATTAGTGAAGACT
CGTCTTTAACAATTCGAAGATTTAAATTGCAGAATACAAGAATAAACGGA
TTGGCATTCTACGTATCGATCAGCATCTTCAATGCAAATGAAATCCGAAT
TGTTGACTGTGTTATGAAGAACCGTCTCATCTATGTTGATGATTCGAGTA
ATGTGACAATTCAAAGCATTGAATTACAGAATGCAACAATTTATGGAACT
ACATTCTTCGTATCGAGCAGCATCTTCAACGCAAATGAAATCCGAGTTGT
CGACTGTGTTATGAAGAACCGTCTCATAAGTGTTCAAGATTCGAGTAATT
TGACAGTTCAAAGCATTGAATTACAGAATACAACAGTTTATGAAGTGGCA
TTCTTCGTATCGCGCAGTATCTTCAACGCAAATGAAATCCGAATTGTTGA
CTGTGTTATGAAGAACCGTCTCATAAATGCTCAAGATTCGAGTAATTTGA
CAGTTCAAAGCATTGAATTACAGAATATAACAGTTTATTATATAGCAACT
TTCGTATCGCGCAGTATCTTCAACGCAAATGAGATCCGAATTGTTGGCTG
TGTTATAAAGGATCATCTTGTCAATGTTCAAGATTCGAGTAATGTAACAA
TTCAAAGCATTGAATTACAGAATATAACAGTTTATTATATAGCAACTTTC
GTATCGCGCAGTATCTTCAACGCAAATGAGATCCGAATTGTTGGCTGTGT
TATAAAGGATCATCTTGTCAATGTTCAAGATTCGAGTAATGTAACAATTC
AAAGCATTGAATTACAGAATATAACAGTTTATTATATAGCAACTTTCGTA
TCGCGCAGTATCTTCAACGCAAATGAGATCCGAATTGTTGGCTGTGTTAT
AAAGGATCATCTTGTCAATGTTCAAGATTCGAGTAATGTAACAATTCAAA
GCATTGAATTACAGAATATAACAGTTTATTATATAGCAACTTTCGTATCG
CGCAGTATCTTCAACGCAAATGAGATCCGAATTGTTGGCTGTGTTATAAA
GGATCATCTTGTCAATGTTCAAGATTCGAGTAATGTAACAATTCAAAGCA
TTGAATTACAGAATATAACAGTTTATTATATAGCAACTTTCGTATCGCGC
AGTATCTTCAACGCAAATGAGATCCGAATTGTTGGCTGTGTTATAAAGGA
TCATCTTGTCAATGTTCAAGATTCGAGTAATGTAACAATTCAAAGCATTG
AATTACAGAATATAACAGTTTATTATATAGCAACTTTCGTATCGCGCAGT
ATCTTCAACGCAAATGAGATCCGAATTGTTGGCTGTGTTATAAAGGATCA
TCTTGTCAATGTTCAAGATTCGAGTAATGTAACAATTCAAAGCATTGAAT
TACAGAATATAACAGTTTATTATATAGCAACTTTCGTATCGCGCAGTATC
TTCAACGCAAATGAGATCCGAATTGTTGGCTGTGTTATAAAGGATCATCT
TGTCAATGTTCAAGATTCGAGTAATGTAACAATTCAAAGCATTGAATTAC
AGAATATAACAGTTTATTATATAGCAACTTTCGTATCGCGCAGTATCTTC
AACGCAAATGAGATCCGAATTGTTGGCTGTGTTATAAAGGATCATCTTGT
CAATGTTCAAGATTCGAGTAATGTAACAATTCAAAGCATTGAATTACAGA
ATATAACAGTTTATTATATAGCAACTTTCGTATCGCGCAGTATCTTCAAC
GCAAATGAGATCCGAATTGTTGGCTGTGTTATAAAGGATCATCTTGTCAA
TGTTCAAGATTCGAGTAATGTAACAATTCAAAGCATTGAATTACAGAATA
TAACAGTTTATTATATAGCAACTTTCGTATCGCGCAGTATCTTCAACGCA
AATGAGATCCGAATTGTTGGCTGTGTTATAAAGGATCATCTTGTCAATGT
TCAAGATTCGAGTAATGTAACAATTCAAAGCATTGAATTACAAAATACAA
CAGTTTATGGATCGGCATTATTTGTTTTTAGAAGCATCTTCAACGCAAAT
GAAATCCGAGTTGTTGATTGTGTTATGAAGAACCGTCTTGTCGAAGTTCA
AGAATCGAATAATGTGACAATTCAAAGCATTCAATTACAGAATACAACAG
TTTATGAAGTGGCATTCTTCGTATCGAGCAGCATCTTCAACGCAAATGAA
ATCCGAGTTGTTAAATGTGTTATGAAGAACCGTCTCATAAGTGTTCAAGA
TTCGAGTAATTTAACAGTTCAAAGCATTGAATTACAGAATACAACAGTTT
ATGGATCGGCATTATTTGTTTTTAGAAGCATCTTCAACGCAAATGATATC
CGAATTGTTGACTCTACAATTGGAGGATTGGCGTACTTAACAAGTAAAAG
TAATATCATCATAAAATATATATCCGTGAACAAGACGGATGTAAGTGACA
TATTTGTTCGTTCATGGGAATTCAGTAAATCTACGATTACAAATGTAACG
ATTCACGAAAGCAGATTTATAGATGGAATGTTTTACCTTgcagaaaaaag
taatgttatacttaaaaatgcaaaaatatctGACACTAAAATAGGTGGAT
ACATGTTTTACTTGTATGAAAGCACGGTAACACTAGAGCAATTCATCATT
ATACGTTGTGATATTTATTGCACTTTTAAATCAATTGAGAGTGTCAAAAA
ACTTGGGCCAGGTATTAAGTCGGAGTTTCTCAAAAGTAACCTCACTGTTT
TGGATTTCAGGCTTTATGATAGCTGTCTGCAGGAAAACTTATTCAATCTA
AAAAATGCAGATATTTCTTTGGAAGGGATTGAAGTTAAAAACAGTTCTAT
AGATAAAAGCATATTGGATGTTGAAAAATCTACTGTCAAACTTCAAGGAT
TTAGTTTAATAAACAATACCACTCCAAACTATGTTATTCAAATGAATAGA
GTCGAAACTGCTACTTGCGAAAATCTTACCACACATGGAAATACTTTTTT
AACTTTGATGAGAATTCAATcatcatatttcaaaatctCGAACTTCAAAT
CAGTTCGTGATAATACTGAAGGAAAAATAGCTATCTTCGAcgttgaattt
tcagatttaaaTTTGACGAACAGTATGTTTACATTAAATTCCATTGCTAT
AGGTNTGAcgttgaattttcagatttataTTTGACGAACAGTGTGTATAC
ATTAAATTCCATTGCTATAGGTAGCCAAATAATGAATTCAAAGCGAAGCA
CCATTTATGTTACAAAAGTTGACATCGTGCTACCGAAATCAATGTCCGAG
GAACTCAAAGtttggaaaatgtttggaaaacatcGTGggcaaataaaaaa
cttttcaacCGTATGCGGAAATCATTTCAACCCTCAAATAAAAAGACTTA
AATCATCGACAGAAATTGTTTGCAACAGATGTCCATCAGCTCAATACTCA
ATGTCAATTGGAAGTTTTCAtataacttttttggaaagtgtgAGTAAACT
GACAAGCAAAAAGAATGCGATTAAACTCAGCAAAATTGCACAAATTGAAA
AAGCAGCATGTAAAATATGCCCAACAGGTTCTCGCTGTCCAGATAACGAT
TTACTAGCACGTGACAATTTCCATGGCTTCTATGAAAATAAAACAGCGGA
TTACCAATTCCTTTTATGTCCCGAAAGATACTGTTGTTCATCAACTACAA
AACATTGCAAATCTCCAACAACTTGCAATTTACATCGAGAAGGAAGACTT
TGTGGCAAATGTGAAGAAGGTTATTTCATCAGTTTCTTCAATAATAAATG
TATCAACATTTCTGAATGTACCAATGGAAGACAACATTTCTGGAcgctat
ttttcatttctttcatcgCTTTGGCTGTGCTGTTAACATTTCTTAAAGAT
ATCATCACTGCTATCAAATGTGCTGGGCTGGTCATAATGGCATGTTTAAG
GTAAAACAGGATTAAATATTTGCGTTCAGTAGAGTTCAAAGGACACGTTA
AtcacaagtttgtaatattcacgcaaatttgtaatatttGCGGAGTTTTG
TGAATTTCCAGCTGCACAGTTTTGCGATCAAGAGTTTGCAcacttttaag
attttaaaaagtttagTTTTATTCTTTACCTTGAGGGATAAGATGAGagc
agaaaacaatcaaattaaatttttagcaGTGCGAATATACATAGCTGAAA
ATAATAGTTTATCAGCTCACTGACGTAACGATAGAGAGAGACCTCCTTTT
TCGTGGATCCGAGCTTTAAGTATTAAAATAAGATATTATCACTCCCGATA
ATAttaagaatttcgaaaaattaagcCAGCTCTTTGCAAAGTATACTTGT
TTTGTAACGAATGAGCATTAGACTTGTACAGAATTATGTAAGAATAAAGA
GTTCCAAGTcagcattttgatttttggttcaaataatatttttaattgGA
TAATTCGGGTAAATTTCGGATTAACTATATTGCGAGCTACTTGATAGGAT
CATTTCTAGTTATTAAAAAAGGCTAATGAATAACGTTGTTCATAAAGAAG
CATCAAAATCTAGTAGtgtttttgcttggaaaagttCGGAACAGCTGGCC
TTAATTCAGCTTGTTTGTAGTCTTATGAACTTGAAAGATAAATCACACTA
TAAGAGGTCAAATTAAACTATTCTTGTTATATACACTTATACACTTATca
catttccagaaaaattaaattttatacCGGCTGCACCACAGAAAAACGTT
TTTCACTACAAACAAGgtgaataaaaattttgaatatatgattttttggt
gtttttcagcctTTCTGATAGATTACCTTTCTGAGTGATTTTAGGCCAGA
AAATGagtattttagaaaaacataatttttgcaagttttctttaaattag
cttttctcgagttctatggtTTTTAACAAACTGAATCCTTCTCTAATgga
aagaaaaacttcaacttGAATTAGTCATTTATTAAACTTGGTCCTTTTCC
CGTCTGTTCGAGGtatttataatatattttatacACAAGCATATAAAAAA
TTTGGTTCATTTAAGTAAGTCCTTCCTCTTTTGAGCGCATTAGAGTTTAC
TCTTCAAGTGTTCGAAAATGAGGTCAAACTtctttgtggcacacccggta
ttcGACAAAAAGTGctttaattatttaaaaaaattgcaaaagtacACAAG
GGCGCAAGGATTCAATTACTAAAGTACGAATAAGAGAATTACATATTCTA
TCTTAATACATATATTTCATAGCGATATATTgcttagacgatgttatcgt
tcgttacagtgatagtaaagtcAGGAGAATATTATAcattatggcggtat
acggaaaaaaatcggtgggagagtttcgaagaaagatTGGCAAACTTtac
cggctgtaaactcttttcgccttttttcgaattttcttcggtTTTTTAAA
TAGTGACTTGTCATAGATTATAATATAGTCTATTGTCATAGATTATAATA
TAGTCTATATATTGCCTTGACGACcatgacctctatgaaacataAGTATG
cgctaaaaattacaaaactgcgtaGAAATTACAAAAGTCGCACATAGCAG
TACCCCTAAAccacaatcatggacaaaaggttcgtagacttctgcaatat
ttgcaaaatacttcaatatcgatcaaaaacaagttcccaagaggttctgg
gtgctttccgAACCCATCCAAAGCTGCTCAAGTCtatcaaagtcacccac
tgcagtctaaagGGCTTGaataactggcttacaccagcatcaaaacgctg
attttttgcttgtggttctcTCAAaggcaattcaaaagcaatgcaacgac
ttcaaaagtgtttttcttaacttccctcccctttcagacacattgaagag
tcattttacactgtttctcatcatttttttactgaaatttcatttgtcta
caacattttgtccatgattgcaaAAGCACAATTTCATTCGTGGGACAAAA
GTTCTCTAAATATGTGAATTCCATTTTAGGAAAACTTGCACAAAGAAAAG
AGAAGAAGATGCCAACGAGATCGATGAAATGGAAGAACTACAAGCAGGAA
ACAACCAAAGAAAACGTAAAGAGATTTCCACTTCATCAATCTTCAATATT
TTGGTCtctttttttcagttaaaaGCTTTGATGACAGTTCAGAGCAATGA
GAAAACATTAATCGATAAACTTATGAACATGGATATTATGGTTAAAAGCA
GTGAAGCTTTTGAAGCACTTTGTCCTTTCAGGGGGTTTAATGTTGTATGG
CGAGAGGTTTTAAACGGATATACGATCCCATTTTTATTGTTAATGACTAT
TGCAGCTTTACACTTGATTGTAAAACTCTTGAAACACTTTCGACCATCAA
GTTTAAGATTAACATGGTTGATGACGAGATTTTGTGTTGGGTATTATATC
ATCATCGCTTTTTGCTACAAGAATATCTGCCGAACAGTCTTTCAGCTTTT
GAACTGCAAAACAATGAATGAAGTAACATTCTTATACATTGACGGTACTG
ttgaatgtttttctttgtgGCAGGTGGCAAATATGTTATTCTTGGTATGT
TGGGTTGTTCCTTTCCCATTTGCAGTCGTTTTGGGCTACTAcctctttaa
aaacaaaaagatttctgTGACGACGTTTCTCATATTTTTAATGTTCCCAA
TGTTTTGTATTGTGAGAACTTGTTTCTCAAGATGGAAAAGAACTGGCGAG
ACTGACAGGAGTGATTTCATTGGAAACAGATTCACAGAAATATTCGAAGA
ACCCTACAGAGACAAATTCTTTTGGTGGGAATCTTGGCGACTTATCGAAC
GTTTTATTGTTTCTGGCATAGCAGTATTTCTGACGAACCCTATCTATCGC
ATCTTATANAATATTTGAAGAGCCCTACAGAGACAAATTCTTTTGGTGGG
AATCTTGGCGACTTATCGAACGTTTTATTGTTTCTGGCATAGCAGTATTT
ATGACGAACCCGATCTATCGCATCTTATACCTGACCCCCGTCTTTGTTTC
CTTAACGTATTTCCACTTCCGAATGAATCCATATAAACGTTCGATGTATA
TTCTAAAACGATTAGATACGGTTTCCTGGTTTTGTTTATTCATTCATTTG
TTCATCAACGGAATGCGAGCTGTTGTTTACATTTATGATGTACCTGATAT
CGATTTTATAAGCCATGCATTAGAAGCTGCTAATATATTGGAGGACTTAT
TTTCTCCACTCTGGTATCTTATTATTTCATTCATTCTTAAGAAGTTgtgt
gaaatatttttagatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008823-exon-sc0000088-1491911889:102522..102547 | TCONS_00008823-exon-sc0000088-1491911889:102522..102547 | Clytia hemisphaerica | exon |
| TCONS_00008823-exon-sc0000088-1510915933:102522..102547 | TCONS_00008823-exon-sc0000088-1510915933:102522..102547 | Clytia hemisphaerica | exon |
| TCONS_00008823-exon-sc0000088-1575043694:102522..102547 | TCONS_00008823-exon-sc0000088-1575043694:102522..102547 | Clytia hemisphaerica | exon |
| TCONS_00008823-exon-sc0000088-1491911889:110951..112239 | TCONS_00008823-exon-sc0000088-1491911889:110951..112239 | Clytia hemisphaerica | exon |
| TCONS_00008823-exon-sc0000088-1510915933:110951..112239 | TCONS_00008823-exon-sc0000088-1510915933:110951..112239 | Clytia hemisphaerica | exon |
| TCONS_00008823-exon-sc0000088-1575043694:110951..112239 | TCONS_00008823-exon-sc0000088-1575043694:110951..112239 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:102522..112239 + |
Blast
The following BLAST results are available for this feature:
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