TCONS_00008832 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008832
Unique Name	TCONS_00008832
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2194

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000088:163342..173182+
coding sequence from alignment at sc0000088:163342..173182+

transcript sequence

>TCONS_00008832 ID=TCONS_00008832|Name=TCONS_00008832|organism=Clytia hemisphaerica|type=transcript|length=2194bp
CACTTTTTTATTGCAACATTTAACCTGGTTAAGATGTTTGGTGGAGGACA
CAAGAAATTTCGAGTCAAAGTGACGACAGGAAAAGCTAAAGGAGCAGGGA
CCAACGCTACCATCAACATCAAATTGATTGATCACGAAGGAAATGTATCT
GAATCTCATGTTCTTGATAAATGGCTTCACAATGACTTTGAATATGGAAA
GATTGACTCTTACACTATCTATGTTGAAAAAACCTTTGgTCGATGCGAAC
ACATCATCTTGCATAGAGACGAGATTGGTTTGAATGACAGCTGGTACGTT
GAACACGTGACTGTTGAACATGAAACCGAGGCTGATGCTCATTTTCCATT
ATCGCGATGGCTACCAGCAAACACAGAAATGCAATTCAAGAAATTTGACT
CACAACTTCCACAAGTcgtgaaaaaagaacatccagAAGTTTACCAACAA
CGTCAGAATGAGTTGgatcaaaagaaaaaggacTTTGCTTATGCACCTAT
TGCTAATAAAGAAAGAATGCCTAGAACAGTAACTTCATTGCCACCTGAAG
AGACTTTCCATCGTAATTATATCTTCGACCTTTTGGAAACGAAATTTACT
GGAGTAATCTCACAATATTTGAAGAAGATGAGATATGAAGATGAGTTTGC
ATCTTTCGATGACATGTACAAAGTCTATTATGGACCACTTTCACCTTTCA
CTGTCCCAGCAGGTCATTCTGGATGGAGAACAGATGAGAAATTTGCACGA
TTGAGATTGACTGGACCTAATTGCACTGTCATCCGTGGTGTCAAGAAAGA
TGGCGGTCTACCTACAAACTTTCCAGTGGATAAGGACAATCTGGCAAAGC
ATTTCATGGAGGGACAATCATTCCAACAAGCTCAAGACGCAGACCGTTTA
TTTTACATCGATTTCAAAGATTTGGATGGTTACATTGCAAAGTCTTCAGG
AAAACCCATGGTTGCTCCTCTTGCGCTATTTTACGCGAGAATGGATGGCA
CTCTTATTCCTTTGGCTATTCAACTCTTCCAAAAAAATGCTGATAGCAAT
CCcATCTTCTACCCTCCACCAATCGATGACGAGAAAGTGTGGTGTCACGC
CAAATTTTGGTTCGGTGTCGCTGACTCCAACTACCATGAACCAGTCACAC
ATTTGTTGCAAACACATTTAGTAGCTGGAGATTTCATCACTTGTTTTCAT
CACATGATTTCACCCTCTCACCCTGTTTACAAATTGATGTTACCTCATTT
TATCTACCTTCTTAACATCAACACAGATGGTATGCCAGTTTTGACCGCTG
AGGATGGCGCTTTCAACAAAATCCTGACCTTCGGACTTGATAATTGTTAT
GATCTCATGTACAAAaaATACCAAACATTCAAGTTGAGCGATGCATACTT
GGCCACTGATTTATCGAACAGAGGAGTTGAAAACCTTCCCAACTATCATT
ACATGGAAGATGCAAAGCCCATGTTTAAAGCCATCGAAGATTATATCACT
GCCTCTCTCAAAACTATTTATGGAGGAAAAGACCAAGTCCTAAAAGATGA
TTTCGAAATGCAGAATTTCGCAAAATTGTTATGTGACAAAACGGAAGGAA
TGAGAGGAGTATGGGGTGATGGCACATTCACCAAATTGGACGATTTATCC
AAAACTCTTTCAACGATGGTTTTCATTTTGAGTAATGTTCATGCAGCAGC
CAATTTCAATCAATATGATGAATATGGCTACCCGCCCAACCTCCCCTTCC
GCCTTGATGGCGCACCACCAACTGATAAGtctCCAGTGACAGAAGACtat
ttggtcaaattatttgacgtcaatgtTACCTTGGCAACAATGGATTTGGG
AAGAACTTTGAGTATGCAAGGAACAAACAAAATTGGCAATTATGAAACTC
GTTATGAATACAAACCTGACGTTTTAAAACATTATCTCAGTTTCATCGAG
GCATTGAAGAAGGTTGGAGCTGACAACGACTCAAAGAACGCTAAACGAAG
TAATCCCTACCCATGGCTCTCACCAAAGGTCGTTCCTAACTCCATCagta
tttagaaaatttattttttaagtgaaacattttgaaactttgcaatAGGC
CAAGCCCGCAAACTTTTACATATGGAATGCGGAACAAAATATAGACACTT
TCGGTACACACATTGGATGGCATAAATTAAGAGCTAATTAGAGC

Run BLAST on NCBI

protein sequence of TCONS_00008832-protein

>TCONS_00008832-protein ID=TCONS_00008832-protein|Name=TCONS_00008832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=684bp
HFFIATFNLVKMFGGGHKKFRVKVTTGKAKGAGTNATINIKLIDHEGNVS
ESHVLDKWLHNDFEYGKIDSYTIYVEKTFGRCEHIILHRDEIGLNDSWYV
EHVTVEHETEADAHFPLSRWLPANTEMQFKKFDSQLPQVVKKEHPEVYQQ
RQNELDQKKKDFAYAPIANKERMPRTVTSLPPEETFHRNYIFDLLETKFT
GVISQYLKKMRYEDEFASFDDMYKVYYGPLSPFTVPAGHSGWRTDEKFAR
LRLTGPNCTVIRGVKKDGGLPTNFPVDKDNLAKHFMEGQSFQQAQDADRL
FYIDFKDLDGYIAKSSGKPMVAPLALFYARMDGTLIPLAIQLFQKNADSN
PIFYPPPIDDEKVWCHAKFWFGVADSNYHEPVTHLLQTHLVAGDFITCFH
HMISPSHPVYKLMLPHFIYLLNINTDGMPVLTAEDGAFNKILTFGLDNCY
DLMYKKYQTFKLSDAYLATDLSNRGVENLPNYHYMEDAKPMFKAIEDYIT
ASLKTIYGGKDQVLKDDFEMQNFAKLLCDKTEGMRGVWGDGTFTKLDDLS
KTLSTMVFILSNVHAAANFNQYDEYGYPPNLPFRLDGAPPTDKSPVTEDY
LVKLFDVNVTLATMDLGRTLSMQGTNKIGNYETRYEYKPDVLKHYLSFIE
ALKKVGADNDSKNAKRSNPYPWLSPKVVPNSISI

Run BLAST on NCBI

transcript from alignment at sc0000088:163342..173182+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008832 ID=TCONS_00008832|Name=TCONS_00008832|organism=Clytia hemisphaerica|type=transcript|length=9841bp|location=Sequence derived from alignment at sc0000088:163342..173182+ (Clytia hemisphaerica)
CACTTTTTTATTGCAACATTTAACCTGGTTAAGATGTTTGGTGGAGGACA
CAAGAAATTTCGAGTCAAAGTGACGACAGGAAAAGCTAAAGGAGCAGGGA
CCAACGCTACCATCAACATCAAATTGATTGATCACGAAGGAAATGTATCT
GAATCTCATGTTCTTGATAAATGGCTTCACAATGACTTTGAATATGGAAA
GATTGACTCTTACACTATCTATGTTGAAAAAACCTTTGGTaagtaaaact
tgaaaaattatttttggtagATTAAAtaaattccatgattttttttagGA
GTACAAATTTTGGAGAGGTCGGAAAATCACGAAATTTACGACGTtcactt
tcgcgaatttgaggataacatatattttataaactttcgcaaatcgatgg
ataaaaatgagaagtTTCAAACGAAAAAGTGAGAATGTACCTCGAACCCA
TTAAAAACGGTTGTTCTTTGAATTATAAAGATTTACTGAAGATTTTACAT
TTTCGAAGTTTTATAGATTTTCGattcttttgaataactttcgcgagcat
aaactttcgtgaATTATCCAgctaagaattttcaaaaacattaactttcg
cgaaaaaagccaaaattcgcgaaaattgcgaaagtttctgcttggaAAGT
TTAAACGCCTAAAGTGTTTTACCAAGCCCACCATTTTAAGTTATGTATTA
AACATTTCGGAAAGGTCAGAGGATTTTGGAATGTTTGGATTGCGGATTTC
CGACTGACTACGCTATTGGATTTGCGACAGAGGTCCAGTCCTCGTTTATG
ATCAAGAGCAGTCAATCTGATAAATGTTTTGGGCTTTTTTGTGATGTATC
AGTCCCCAATCTTTAAGCGCTCTGACGTGATCAAACTTTCACGAAAAAGC
GATTGGAAGCGATTCAGGCTACTTTGCATAGACCTTTTGTAGGATGTgag
acatgttttttttataagcaatagTGTATGAAACATGGTTAAGATGCTTC
CATAAGCGTGTATCGATTGttgcgaggggtaaatcacttgaaaaaaggtg
tacgacactttttgactttttgaattttcattgactttttgacttttttt
tgactttttttccgACAAAAACGCCCACCGTCTTCGGGCGCCCAACATTT
TCCAAAAACGCCAAACGCCTataaattttgctccacccattcgcccattc
aagaaactttttgacctattcaagacttttttttgactttttgacttttt
tctaagaattttagactttttcttcgactttttgactttttgactatttt
ttgactttccgtagaggtgtacgataatttttcgagtgatttacttttga
aaaaaaaaacattcgtggaactaattttttgtttttttctataaggTCGA
TGCGAACACATCATCTTGCATAGAGACGAGATTGGTTTGAATGACAGCTG
GTACGTTGAACACGTGACTGTTGAACATGAAACCGAGGCTGATGCTCATT
TTCCATTATCGCGATGGCTACCAGCAAACACAGAAATGCAATTCAAGAAA
TTTGACTCACAACTTCCACAAGTcgtgaaaaaagaacatccagAAGTTTA
CCAACAACGTCAGAATGAGTTGgatcaaaagaaaaaggacTTTGCTTATG
CACCTATTGCTAATAAAGAAAGAATGCCTAGAACAGTGAGCATTTATTAt
tcgaaaattgaatattgctGTTTAATGTGCCCGAAAAAATGTTATAATAA
TTCaacaacacccctgtgtcacagatctCCTCCTCATTTGAAAATGTGTC
CacaatttcgtccccggtggaaaaaatacacCACAATTGACTGTGATTTC
ATTCCCACTTGATATTCAATGGAAAAATTACACTAAAAACTATAACAACT
ggaattttttgagtttgggACAATAGGATTTCTTTTCCTATTGGGATTTC
ATCGATAGCAACTTTCAAAAAGCTCCAGCGGGGCTATGAGACAATGAGAC
ATGAGTGTAATTCATCTCTCGTAAAAAGCAAGGATCCGATAacaacaccc
cttctcacagacccggtgggaatATCTGGCAGGGGGGGGATTCGTATTCC
CATGGTTTTATGGCTCGAGatttcattccattgttttcagcccataaaat
tcagtggggatggaaaaatagcacgatattttacagtgaggattgcgcat
atttgattattttcatcgAAGACAAAAGTTGGAGTATAATGTTCCACTGG
Agacgatatttttgccaatttttccagtgggaaggggtaccagtgggtct
gtgagaagggggtgtataagaATCTAATTTACATGCATGAATATTCATGA
TTTACTAACTCTATTTCTTTCCACAAAACCCTCTTCAACTTTAAACTTAT
TTTATACACTTTTAGGTAACTTCATTGCCACCTGAAGAGACTTTCCATCG
TAATTATATCGTAAGATATCACTTCGTTTTTCTTACTTGTACTTTTTATT
TAGGCCTGAGATTTCCAAATAGTTTGAGTGTCTACTCCCCATTCAGAATC
TATACAAAGTTAGGTAGAGATATTTTGCTTGATGCAAAAACAACTCCCCN
TTATCGCTTTGTTTttcctactctcgggtacctaatagccggggggtttg
gaataagcgggagggggggttggaataaaaatgtcctgggtggaaaactt
ttgaaaaggaggctaatacagcagaattaggacaaaagagggaactttca
aaaacattttcccaaaaatcaataagcaggggggttggaataaaaatgtc
ctggggggaaaacttttgaaaaggaggctaatacagcagaattaggacaa
aagagggaactttcaaaaccattttcccaaaaatcaataagcaggggggt
tggaataaaaatgtcctgggtggaaaattttcgaaaaattaattagcggg
gggggggacggctattaggtacccgagagtacttgtACTTTAGGCCTGAG
ATTTTAAGTAGTTTTGAGTGTCTACTCCCCATTCAGAATCTATACAAAGT
TAGGTTAGAGATATTTTGCTTGAAGCAAACAACTCCCGTAAGAAATTAAA
ATGACTTTTCATTCATTCATGTATGGGCGGAAAGAGAAAAATGTAACTTT
AGCTtacacatattttttataagagcatccaaaactttttaaaccCTCGG
ATtttattaactttttgagatctaagcctaaaaatgttctcaacatatTC
TTGTTTTCGctatttttagagtatttttgtATCCATTTTGCtaaagaaat
cgggtgttttagagtccgcaaagcgtTGAGAcgctcttaacatgttctta
acatttggtcattgaagcctcatgttcttatatagtttctcATATAACTT
GTATTGTTTCCTATAGTTCGACCTTTTGGAAACGAAATTTACTGGAGTAA
TCTCACAATATTTGAAGAAGATGAGATATGAAGATGAGTTTGCATCTTTC
GATGACATGTACAAAGTCTATTATGGACCACTTTCACCTTTCACTGTCCC
AGCTGTAAGTTCTTGCATCGATCCATTCTTTATTTGTATTTATTAGACCA
GCTAAGATCTCACCTTACCATCATCCAAGATTCTTAGACGGTCTTTTTAT
GTAAGATCTTGCAATTTCTTGCAAGACCGGGGGGGGGGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGGACCACTTTCACCTTTCACTGTCCCAGCAGTAAGTTCTT
GCATCGATCCATTCTTTATTTGTAGTTATTAGACCAGCTAAGATCTCACC
TTACCATCATCCAAGATTCTTAGACGGTCTTTTTATGTAAGATCTTGCAA
TTTCTTGCAAGAGCCTACGCGAATTTAATATTTTTGCACGACCAAAAGTT
ACAGTCCTCCAAAATAGGCTGAAAAAGACCGGGAAAAAAATGGGATAATT
ATTGTTTGTTAATAAGTCTCTTCTCGAAAATCAATACGCTTATTTCTCTT
CAAGGGTCATTCTGGATGGAGAACAGATGAGAAATTTGCACGATTGAGAT
TGACTGGACCTAATTGCACTGTCATCCGTGGTGTCAAGAAAGATGGCGGT
CTACCTACAAAGTAagcttcaatttttaaaagtatttgtCTATTTTTGAA
ACAGTGCAGGTCACACAATTTATACATGAAATCACCGACTTCCAATCAAA
TTAAATCATGAAATTCCATCCTACCCTTCGAATAGACTATCACTGGCTAT
GGTCAGGTTTATTAGTGGGGAGCTTTCATAACCTCTGCGACAGTTTTccc
tagcctagttaactaagcccgtattcacaaggctagttaggacacacggc
ttttggcaatatagcgttttcggcgctttaaagattttttatatttacgg
actTTAAGTTTGCCTTGCAATACTatttcagtcacaacttaccattaTAT
TTATTctggtgactgaatcaaactagcttagaatTCTAGATTTCTAGGCA
AAATTTTCCCATCAATTATAaacagatgaaaaaaaaatcataacttttTA
TTATCTAGCTTTCCAGTGGATAAGGACAATCTGGCAAAGCATTTCATGGA
GGGACAATCATTCCAACAAGCTCAAGACGCAGACCGTTTATTTTACATCG
ATTTCAAAGATTTGGATGGTTACATTGCAAAGTCTTCAGGAAAACCCATG
GTTGCTCCTCTTGCGCTATTTTACGCGAGAATGGATGGCACTCTTATTCC
TTTGGCTATTCAACTCTTCCAAAAAAATGCTGATAGCAATCCcgtaagat
ttcttttgttatcgcttgcgtttttaaaaatcttttcaaaaggGACATAT
GTGAATATGTCACGTGTCTTAAAACCGAACAGttttaaattacaaaaatc
agAATATATTTGGTCAGTGCCATAGAAATTCTATCATCTTTTgtaaaaag
acaaagaaaagctatcaaaagtttgaaaatttttatagcACTAATTTGCT
TTGCAAGTAgagaaattttttgtttgacCACATGTCTTTGTCCACCTTGT
ATAAAAAACAATCGGAATGTTTTTACATGTGACATGTATGCTCTTTGCAT
ACAGTTTGTTGTCACATTTCGTAATTAGTTTTAAAGGTGCTCGATTCATG
CAATATGTCTCGAGTGTACTAAATTTTGTATTATTCATTGTGAACAGATC
TTCTACCCTCCACCAATCGATGACGAGAAAGTGTGGTGTCACGCCAAATT
TTGGTTCGGTGTCGCTGACTCCAACTACCATGAACCAGTCACACATTTGT
TGCAAACACATTTAGTAGCTGGAGATTTCATCACTTGTTTTCATCACATG
ATTTCACCCTCTCACCCTGTTTACAAATTGATGTTACCTCATTTTATATA
CCTTCTTAACATCAACACGTATGTTATAGTTTCTTCTATTAGCTCTATAT
GCAGTGATCAACTCTTAACTACGCGGTCGACCTCAGAGGGGGCNCTACCT
CATTTTATCTACCTTCTTAACATCAACACGTATGTTATGGTTTCTTCTAT
TAGCTCTCTATGCAGTGATCAACTCTTAACTACGCGGTCGACCTCAGAGG
GGGCTGGTAATGGATTATTAATCGTTATTTTTGGCAGCCTctaaaacaaa
tcaaacaaactcCTGCCGAAACTATTCCATACTAGGAAAGACATTTCCTG
AATCTCTGCGGTGGAGCATTTTAACGTTTGAATAGCTTAACTCTTTAATG
ACGTTATTTATCGCTTCAATGCAAGGGTATCTTACAATTTTCCTATTTTC
GTTATCAGTTTCCTTAAAAGCTTGTAATCATTCCATCTTTCCTCTTTTAG
AGATGGTATGCCAGTTTTGACCGCTGAGGATGGCGCTTTCAACAAAATCC
TGACCTTCGGACTTGATAATTGTTATGATCTCATGTACAAAaagtaagaa
tttttttttaacattctaTTTGTAGAAAAAGATAAGATTCATTTCTCAAT
TTAACGATATCAAAAAATTAAGGGGCTACAGCTCCATAAAAACGAGGTCA
TGCAAAGTCTAGACTGGATTGGGAACCATAGCTTGTAACCATTGAACCTA
AGCCCAAAGTGCTAGAGAGGAACTCCTGGAtggaaaatgaagccacttat
ttcccatcctgaACGCGTGACCCGCGGGGTCTAGATTGAAGGTAAAGCAT
atcgccagatttcgaaaaatatatcgcgtgaaaacaaagaaagtgctaga
ttcaatccatcatTCTGAATGTGGtgcaaatcttaaggcttcacttgtTC
TTGCTTGAGCAGGGTTAAAGATTCACCTCTAGCTCCTTCGGGGCTTTTAT
CTCAATGCTTAAAACCCACtaatataaattattttatctTCATGACAGAT
ACCAAACATTCAAGTTGAGCGATGCATACTTGGCCACTGATTTATCGAAC
AGAGGAGTTGAAAACCTTCCCAACTATCATTACATGGAAGATGCAAAGCC
CATGTTTAAAGCCATCGAAGATTATATCACTGCCTCTCTCAAAACTATTT
ATGGTTAGTATAAACCCTAAAAACTCTTATTCGGTGAAAGGGTAACTCAA
GCTCGGCAAGGTTTTCAAATGATCAGAAATTGTCCTTGAGTGGGGTGATA
CAGGCTAGTTAGTATACAACTTCAATATTTTAATGTTTGACTGGAAGCTA
AACTCTAAAACTGTCACTTCTCAGGGTACCTTAGGCACTCCCGAATGGTC
GCATGACGCTTGCACCTTAACctgaatgtttttatgttttttcgaAGTAT
TCgatatagaaaataaaatggggcatggtcagatggtcccacttgttgaa
aattcgaaaaattttgaaaacctaatttttcagcaaattttcatgatttt
gatgacgtcacagaaataagaatttgaataaCTTCTATTAGGAGAAAAGc
ttttgacttcaaattttcaccaaaggtgtaaatcaataaaaaaaggatcc
acgaaaaaaaattaaaaattctttgctaatgtcaataaaatttgcaaaaa
caccgttttggctgaaattgCTAGTCCTTTAGCTAGGgcctttttttgaa
attcaaatatatGACAATACAGCTATAAAACTCTAAGGATTTTAAAATCG
AgttattgattttttgattcTCGTTCGATTCTTAGGAGGAAAAGACCAAG
TCCTAAAAGATGATTTCGAAATGCAGAATTTCGCAAAATTGTTATGTGAC
AAAACGGAAGGAATGAGAGGAGTATGGGGTGATGGCACATTCACCAAATT
GGACGATTTATCCAAAACTCTTTCAACGATGGTTTTCATTTTGAGTAATG
TTCATGCAGCAGCCAATTTCAATCAATATGATGAATATGGCTACCCGCCC
AACCTCCCCTTCCGCCTTGATGGCGCACCACCAATTGATAAGGTAATGTT
AACCATATCTGCGAAATTAAGGATGATAATATGCTGAAAATTTTAcattt
attacgatttcgaggttaagtagatttccaatttttttgagaacTTTTCG
CGAGTGTAAacttcaaagacatttactatcgcaaaaatggccgaaattcg
cgaaaatcgtgtAAGTTTTTCTGAACATgactcaaaaaatgtcaaatact
ttttgaatgaccTTTCTGAGAGTGACTACATTAATCTGTAGATATCGCAG
CCGATATCTACAGAAATTTCAAAACTCATTGTCGTAGGGCCAATGTACTA
CGCTATTTTTTACGTGGAACATCGTGGAACATCGTGGAATATCTGACACA
TAGTACGAAATGACTTATAAATTAGTACCTCTTCTACCAACTGTAGTCCC
TGCGTTGCTACTCGCTATTTCCTAGCTGGTGCTTTCTATGTTATATTATT
TCTTATACCTAGTTTTAGTCTAATTCTCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCACCAAAT
TGGACGATTTATCCAAAACCCTTTCAACGATGGTTTTCATTTTGAGTAAT
GTTCATGCAGCAGCCAATTTCAATCAATATGATGAATATGGCTATCCGCC
CAACCTCCCCTTTCGCCTTGATGGCGCACCACCAACTGATAAGGTAATGT
TAaccatattttttatttgtcatCTGCGAAATTAAGGATGATAATATGCC
GAAAATTTTAcatttattacgatttcgaggtcaaatagatttccaatttt
tttgagaatttttcgtgagtttaaactttcgcgaattaccatgttaagaa
ttttcaaagacatttactatCGCAAATATggccgaaattcgcgaaaatcg
tgaGTTTTTCAGAACAAGACTCAAAAAATgtgaaatactttttgaatgac
cTTTCTGAGAGTGACTCCATTAATCTGTAGATATCGGATGCGATATCTAC
AGAAATTTCAAAACTCATTGTCGTAGGGCCAATGTACTACGCTATTTTTT
ACGTGGAACATCGTGGAATATCTGACACATAGTACGAAATGACtttccct
tttttctttttagtctCCAGTGACAGAAGACtatttggtcaaattatttg
acgtcaatgtTACCTTGGCAACAATGGATTTGGGAAGAACTTTGAGTATG
CAAGGAACAAACAAAATTGGCAATTATGAAACTCGTTATGAATACAAACC
TGACGTTTTAAAACATTATCTCAGGTTAGTTTTTATTCTGTACGGACAAC
TTTCGCATTTCAGTTAAGTTCCGTCTTTCAAATTTTAAGCAAGTTCAGCT
TTTTTCAGCGATGTTGTCGGCTATTTCGGAAATATTATCGGTACCTTCTG
ATGAAATTTCCACGTAATACAGTATATCCAAAAAAACGGAACATAATTCA
AATGGTACCTAACATGTTTGTGCGGAACAATGTGTCAGAACTTCATGCTG
GAGGCTTTATTTTCTGTACTAAAGTTTGACACGACTCCCCCAATAGAAAG
TATTCAAACATTTAAgtctaattttgtttttaaacagTTTCATCGAGGCA
TTGAAGAAGGTTGGAGCTGACAACGACTCAAAGAACGCTAAACGAAGTAA
TCCCTACCCATGGCTCTCACCAAAGGTCGTTCCTAACTCCATCagtattt
agaaaatttattttttaagtgaaacattttgaaactttgcaatAGGCCAA
GCCCGCAAACTTTTACATATGGAATGCGGAACAAAATATAGACACTTTCG
GTACACACATTGGATGGCATAAATTAAGAGCTAATTAGAGC

Coding sequence (CDS) from alignment at sc0000088:163342..173182+

>TCONS_00008832 ID=TCONS_00008832|Name=TCONS_00008832|organism=Clytia hemisphaerica|type=CDS|length=2055bp|location=Sequence derived from alignment at sc0000088:163342..173182+ (Clytia hemisphaerica)
CACTTTTTTATTGCAACATTTAACCTGGTTAAGATGTTTGGTGGAGGACA
CAAGAAATTTCGAGTCAAAGTGACGACAGGAAAAGCTAAAGGAGCAGGGA
CCAACGCTACCATCAACATCAAATTGATTGATCACGAAGGAAATGTATCT
GAATCTCATGTTCTTGATAAATGGCTTCACAATGACTTTGAATATGGAAA
GATTGACTCTTACACTATCTATGTTGAAAAAACCTTTGgTCGATGCGAAC
ACATCATCTTGCATAGAGACGAGATTGGTTTGAATGACAGCTGGTACGTT
GAACACGTGACTGTTGAACATGAAACCGAGGCTGATGCTCATTTTCCATT
ATCGCGATGGCTACCAGCAAACACAGAAATGCAATTCAAGAAATTTGACT
CACAACTTCCACAAGTcgtgaaaaaagaacatccagAAGTTTACCAACAA
CGTCAGAATGAGTTGgatcaaaagaaaaaggacTTTGCTTATGCACCTAT
TGCTAATAAAGAAAGAATGCCTAGAACAGTAACTTCATTGCCACCTGAAG
AGACTTTCCATCGTAATTATATCTTCGACCTTTTGGAAACGAAATTTACT
GGAGTAATCTCACAATATTTGAAGAAGATGAGATATGAAGATGAGTTTGC
ATCTTTCGATGACATGTACAAAGTCTATTATGGACCACTTTCACCTTTCA
CTGTCCCAGCAGGTCATTCTGGATGGAGAACAGATGAGAAATTTGCACGA
TTGAGATTGACTGGACCTAATTGCACTGTCATCCGTGGTGTCAAGAAAGA
TGGCGGTCTACCTACAAACTTTCCAGTGGATAAGGACAATCTGGCAAAGC
ATTTCATGGAGGGACAATCATTCCAACAAGCTCAAGACGCAGACCGTTTA
TTTTACATCGATTTCAAAGATTTGGATGGTTACATTGCAAAGTCTTCAGG
AAAACCCATGGTTGCTCCTCTTGCGCTATTTTACGCGAGAATGGATGGCA
CTCTTATTCCTTTGGCTATTCAACTCTTCCAAAAAAATGCTGATAGCAAT
CCcATCTTCTACCCTCCACCAATCGATGACGAGAAAGTGTGGTGTCACGC
CAAATTTTGGTTCGGTGTCGCTGACTCCAACTACCATGAACCAGTCACAC
ATTTGTTGCAAACACATTTAGTAGCTGGAGATTTCATCACTTGTTTTCAT
CACATGATTTCACCCTCTCACCCTGTTTACAAATTGATGTTACCTCATTT
TATCTACCTTCTTAACATCAACACAGATGGTATGCCAGTTTTGACCGCTG
AGGATGGCGCTTTCAACAAAATCCTGACCTTCGGACTTGATAATTGTTAT
GATCTCATGTACAAAaaATACCAAACATTCAAGTTGAGCGATGCATACTT
GGCCACTGATTTATCGAACAGAGGAGTTGAAAACCTTCCCAACTATCATT
ACATGGAAGATGCAAAGCCCATGTTTAAAGCCATCGAAGATTATATCACT
GCCTCTCTCAAAACTATTTATGGAGGAAAAGACCAAGTCCTAAAAGATGA
TTTCGAAATGCAGAATTTCGCAAAATTGTTATGTGACAAAACGGAAGGAA
TGAGAGGAGTATGGGGTGATGGCACATTCACCAAATTGGACGATTTATCC
AAAACTCTTTCAACGATGGTTTTCATTTTGAGTAATGTTCATGCAGCAGC
CAATTTCAATCAATATGATGAATATGGCTACCCGCCCAACCTCCCCTTCC
GCCTTGATGGCGCACCACCAACTGATAAGtctCCAGTGACAGAAGACtat
ttggtcaaattatttgacgtcaatgtTACCTTGGCAACAATGGATTTGGG
AAGAACTTTGAGTATGCAAGGAACAAACAAAATTGGCAATTATGAAACTC
GTTATGAATACAAACCTGACGTTTTAAAACATTATCTCAGTTTCATCGAG
GCATTGAAGAAGGTTGGAGCTGACAACGACTCAAAGAACGCTAAACGAAG
TAATCCCTACCCATGGCTCTCACCAAAGGTCGTTCCTAACTCCATCagta
tttag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004959	XLOC_004959	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00008832-protein	TCONS_00008832-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000088	supercontig	sc0000088:163342..173182 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66054	4.34606	1.27489	0	0.659009	0	1.16557e-07	4.9711e-08	0.0013377	1.73886	0.851302	4.11538	1.59788	0.835324	2.90881	3.87443	1.50911	0.419726	2.47558	0.918602	3.31267e-09	3.03355e-09	2.73853	1.20959	277.108	211.842	2.24925	2.49082	0.620264	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013819	LipOase_C
IPR001024	PLAT/LH2_dom
IPR020834	LipOase_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00008832 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.897e-70
Identity = 192/689 (27.87%), Postives = 327/689 (47.46%), Query Frame = 1

Query:   58 FRVKVTTGKAKGAGTNATINIKLIDHEGNVSESHVLDKWLHNDFEYGKIDSYTIYVEKTFGRCEHIILHRDEIGLNDSWYXXXXXXXXXXXADAHFPLSRWLPANTEMQFKKFDSQLPQVVKKEHPEVYQQRQNELDQKKKDFAYA------PIANKERMPRTVTSLPPEETFHRNYIFDLLETKFTGVISQYLKKMR--YEDEFASFDDMYKVYYGPLSPFTVPAGHSGWRTDEKFARLRLTGPNCTVIRGVKKDGGLPTNFPVDKDNLAKHFMEGQSFQQAQDADRLFYIDFKDLDGYIAKSSG----KPMVAPLALFYARMDGTLIPLAIQLFQKNADSNPIFYPPPIDDEKVWCHAKFWFGVADSNYHEPVTHLLQTHLVAGDFITCFHHMISPSHPVYKLMLPHFIYLLNINTDGMPVLTAEDGAFNKILTFGLDNCYDLMYKKYQTFKLSDAYLATDLSNRGV---ENLPNYHYMEDAKPMFKAIEDYITASLKTIYGGKDQVLKDDFEMQNFAKLLCDKTEGMRGVWGDG---TFTKLDDLSKTLSTMVFILSNVHAAANFNQYDEYGYPPNLPFRLDGAPPTDKSPVTEDYLV-KLFDVNVTLATMDLGRTLSMQGTNK--IGNY-ETRYEYKP--DVLKHYLSFIEALKKVGADNDSKNAKRSNPYPWLSPKVVPNSISI 2052
            + V V TG    AGT+  I + L+   G  SE H+LDK  +NDFE G +DSY + V++  G  + + + + +  LND WY++++T++        FP  RW+  + E+  +   ++L +    +   + Q R+ EL+ ++K + +       P++   +  +    LP +  F      D +      + + ++ +    ++  +  F D  K++   +S        + W+ D  F    L G N  +IR   +   LP   PV  + +        S +Q      +F +DF+ LDG  A  +     + + AP+ L Y  +   ++P+AIQL Q   D NPIF P   D +  W  AK W   +D + H+ +THLL+THLV+  F    +  +   HP++KL++ H  + + INT     L  E G F+K    G      ++ +  +    +       +  RG+   E++P Y Y +D   +++AI  + TA +  IY   DQV+++D E+Q+F   +     GMRG    G   +    + LS+ L+ ++F  S  HAA NF QYD   + PN P  +   PPT K  VT + +V  L D   +   +     LS    N+  +G Y E  +  KP  + +  +   +EA+  V A+   +N K+  PY +LSP  +PNS++I
Sbjct:    4 YTVTVATGSQWFAGTDDYIYLSLVGSAG-CSEKHLLDKPFYNDFERGAVDSYDVTVDEELGEIQLVRIEKRKYWLNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKLAR--DDQIHILKQHRRKELETRQKQYRWMEWNPGFPLSIDAKCHK---DLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVK-ISNTISERVMNHWQEDLMFGYQFLNGCNPVLIRRCTE---LPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPS--DAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTF-TAEVVDIYYEGDQVVEEDPELQDFVNDV--YVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAE---RNKKKQLPYYYLSPDRIPNSVAI 674

The following BLAST results are available for this feature:

BLAST of TCONS_00008832 vs. Swiss-Prot (Human)

BLAST of TCONS_00008832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LOX5	1.897e-70	27.87	Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO...	[more]

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TCONS_00008832 (transcript) - C. hemisphaerica