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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008839 ID=TCONS_00008839|Name=TCONS_00008839|organism=Clytia hemisphaerica|type=transcript|length=1677bp
CAGAACTGTTTGCACGTTCATTAGGCCCATTAAAATAATTCAACCGTGTC
TAAAATAATTTCTCAAACTTTAATCGTGTACAGACTTTAGTTGAAAATTT
CACTAATGGAATGACTTTATAATTGGTGAAATAATAGGGaattttttggg
aattttttgagTCGTTATGCGCACGTTGGTTATTTTTTGTTGCTTGGTTG
CAGCAATAAGCTGCCATGAACCACATAAACAGAAAAGAGgctTGGATCCA
GAGAAACTACCAATTTCGCAAATCTTCTTAAACAGTATTCGATCAAAGAC
CTCTGGAAGCAATGAAGAGAGTCTGAAGCGCTCCAGACGTGGTTATAGAG
CATATTTCTATAATTATTTGGATGAAATTGCAATGTCTATTTGTGCAGCA
TTACCTAGTGAAGGACCTGGTTTGATTTATGCTGTTCGCCGAACGTGTGG
CGAAAAACCAACTTGTAAAGATATCTGCACTGACCATGCTTTGAGAAAAC
AAGGACCACACGAGGTTCAAGGATTAAACTGGGCATGCTCGGAATCACTA
CACGTGTATAAACGACAACCGTCATTAGCAGATAATTACGAAGAATACAC
CGACTCTCATAAATTAGGATTGGCAATTTATCGTCATTATTCATGTACGA
TTGGTGGATGTGGACCCAATTATTGCTGCTGCAGAGCATCTTAAACTTTT
GATCCTATAGGAAATGGcactaccattttgattgacgtttactccggttg
ttttttcttttgttcactTCAAAGAAATTAGATCGTAATTATGAGAACGA
CGGGAAAAAGATTTTGGAGTAAACatcaaacaaaaatggtagtACAATCT
CCTAAAGAACTATTGTAAACACGACTTTGACGACAGATCTTGACTAATAT
TTTTTAACTACCGAGTAATTTGAATGATTTTCTTAAAGGAATTTTGGTCA
CTACGAGCATGAAAATAACTATAGGGTAAAGACTTTGATTAGGATTTTga
ttaataaaaaatattaaattttttttaggaaATCCTCTAATgtaatttga
attaaaattattttaacattattttacaatgtaaataaataatacacgtt
ttttcttttattagaacgcagtttataagaacattgaggctgaaattcga
cgaaaaattaagaacatcgtaagaacatgcccagcctcagtttggaaaaa
aatgacaagaaactacaattttttcctctttacaagcagttttaaacaaa
cttaGGTTATtaggaatggattttctaaatcgagagtcaaatattgtcca
aattttaccaattttaagtgctctttattttgcatgatattgtcgattta
gagtagtctgaaaatttaagaacgcatctaagaacatttcaggctaaaaa
ttgctaaaaaaataagcacatccaggctcagccaaattttaggtgttcta
ataaaaaaaaaacgtgtatatgacAAAGAATATACGCATTTTCATAACAA
AATTTTCAGCATGCAAcattcttttttgataaaaccaGTAAGTCTTTGAT
GAGGCTCGGCtacttttctttttgagacTTTAAAATTCTTCTCATCACAT
GTTTATTTTTATggtattttatgttttaaaccCTGTTTTTACTAATCCCT
CTCAATTAGCTTTAAATTTCGTCGTTT Run BLAST on NCBI protein sequence of TCONS_00008839-protein >TCONS_00008839-protein ID=TCONS_00008839-protein|Name=TCONS_00008839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MRTLVIFCCLVAAISCHEPHKQKRGLDPEKLPISQIFLNSIRSKTSGSNE
ESLKRSRRGYRAYFYNYLDEIAMSICAALPSEGPGLIYAVRRTCGEKPTC
KDICTDHALRKQGPHEVQGLNWACSESLHVYKRQPSLADNYEEYTDSHKL
GLAIYRHYSCTIGGCGPNYCCCRAS Run BLAST on NCBI transcript from alignment at sc0000088:204923..208193+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008839 ID=TCONS_00008839|Name=TCONS_00008839|organism=Clytia hemisphaerica|type=transcript|length=3271bp|location=Sequence derived from alignment at sc0000088:204923..208193+ (Clytia hemisphaerica)
CAGAACTGTTTGCACGTTCATTAGGCCCATTAAAATAATTCAACCGTGTC
TAAAATAATTTCTCAAACTTTAATCGTGTACAGACTTTAGTTGAAAATTT
CACTAATGGAATGACTTTATAATTGGTGAAATAATAGGGaattttttggg
aattttttgagTCGTTATGCGCACGTTGGTTATTTTTTGTTGCTTGGTTG
CAGCAATAAGCTGCCATGAACCACATAAACAGAAAAGAGGTAACAGAATC
TACTTTTTAATTAATTTGTTTTATAGTCTAGCCGTTCTTATAACAGTTTG
CAGAGTCTGGGTGccctttctttttaaatctaCCCATGACTTATGAACCA
CTCTTTAAAAATATCATACatcccctgtgtcacagacccggtggtaCCCA
CTggcaaatttgaccaaaaccaaaaaaatggggaaaatatcCTGTGATTT
CAGCCCCAGTGGGAAAAGGAATCTGTTTTCACCCCATGAAAACGTAAACG
TAACGTAAGAAAATGGAGGCggttagaaaaattaaacttacgAGTGCGCA
AGTTCCAAATGTGTCATTGTTGCCTCATCCTCATAATCATCCAAAAAGCA
AATTACAGTAGTTTATTGATGACCAATTATTGCAATCTCTAAATGTTTCT
ATTCGTGTTAATTCATTTTGTAATATTTcagctgaaaaatgaaaaatatg
ttttgaatatCAATCAGAATCTTTGCCAAAAAGACATTTAACATTTATAT
TTGGTGTcaaaatggttaaaaataaTTTGGGAGAATTCTTTAGACTTCTT
TAAACTAAAAGGGTATAAACGGTTTGACAAACACAGTACACATGTTTATT
TTTTAGGCTTCTTGGACAATGAACATtcataaatcataaaatagtacaga
gtggagtctccataactcgaacatgcacagggaacacaaatttgttcgaa
tcatggaaatttcgaattgtGGAGTAacaaggtttataaggcattgtcaA
CTAAAGGGACCAAAAATCTTGCTCGAGTTATACAGGttcaagttaaagag
actccacggTACCACTTTAACCAAGAATACAGTAATCAAATttgtgaatt
ttattttttaggctTGGATCCAGAGAAACTACCAATTTCGCAAATCTTCT
TAAACAGTATTCGATCAAAGACCTCTGGAAGCAATGAAGAGAGTCTGAAG
CGCTCCAGACGTGGTTATAGAGCATATTTCTATAATTATTTGGATGAAAT
TGCAATGTCTATTTGTGCAGCATTACCTAGTGAAGGACCTGGTTTGATTT
ATGCTGTTCGCCGAACGTGTGGCGAAAAACCAACTTGTAAAGATATCTGC
ACTGACCATGCTTTGAGAAAACAAGGTAAGAAAACAATTACTAATTGAAG
AGCACCAAGTAATATTTTAAGCATCCACATTCACTTGTAGAGGCCCTAAA
GTATTTTAAGTCGTTGTATTGAAAACGTCAGTTTGTGAAAGTagatttaa
actttttcttgtgTCTAAAGGAGATATCTGCAGTATGGATATTCAGCTCA
GgtttagactggagtcgttaaTAATGTGTTTAATACAGTATTGTAGATGT
TCAATtcttgttacgggataatatgaGTTTGTATAAATATTTTGTCCTCT
CATTTAATTACTTTGCTCGTCTAGCATACCAGATTAGGTTGTTGAGTTAC
ATAGATGTATCGAATGTATAATGCTAGACAGTGGAATAGCAAGGTCTAGT
CGCCCTGAATTGGGAGGACAAGGATCTGGCTTTGAGCTGAAAGGTTGAAG
GTCGAGGTTTAGAAGCTCTGTACAGTGAAAGGACGGAGCCTTTNTAGGTC
TAGTAGCCCTGAATTGGGAGGACAAGGATCTGGCTTTGAGCTGAAAGGTT
GAAGGTCGAGGTTTAGAAGCTTTGTACAGTGAAAGGACGGAGCCTTTTAG
TAGAAGCTCAAGGGTAGGGGCTAGAATGTGAAAAAGCATTATTTTGGGTA
CAAGCTAGGTATAGTGGTCTTAGTCAAAAGACGAAGTAAGGAGATCATTT
TGCGATAGgaaaatttaacaaattttATTCCATGCTTGTTTATGCAGGAC
CACACGAGGTTCAAGGATTAAACTGGGCATGCTCGGAATCACTACACGTG
TATAAACGACAACCGTCATTAGCAGATAATTACGAAGAATACACCGACTC
TCATAAATTAGGATTGGCAATTTATCGTCATTATTCATGTACGATTGGTG
GATGTGGACCCAATTATTGCTGCTGCAGAGCATCTTAAACTTTTGATCCT
ATAGGAAATGGcactaccattttgattgacgtttactccggttgtttttt
cttttgttcactTCAAAGAAATTAGATCGTAATTATGAGAACGACGGGAA
AAAGATTTTGGAGTAAACatcaaacaaaaatggtagtACAATCTCCTAAA
GAACTATTGTAAACACGACTTTGACGACAGATCTTGACTAATATTTTTTA
ACTACCGAGTAATTTGAATGATTTTCTTAAAGGAATTTTGGTCACTACGA
GCATGAAAATAACTATAGGGTAAAGACTTTGATTAGGATTTTgattaata
aaaaatattaaattttttttaggaaATCCTCTAATgtaatttgaattaaa
attattttaacattattttacaatgtaaataaataatacacgttttttct
tttattagaacgcagtttataagaacattgaggctgaaattcgacgaaaa
attaagaacatcgtaagaacatgcccagcctcagtttggaaaaaaatgac
aagaaactacaattttttcctctttacaagcagttttaaacaaacttaGG
TTATtaggaatggattttctaaatcgagagtcaaatattgtccaaatttt
accaattttaagtgctctttattttgcatgatattgtcgatttagagtag
tctgaaaatttaagaacgcatctaagaacatttcaggctaaaaattgcta
aaaaaataagcacatccaggctcagccaaattttaggtgttctaataaaa
aaaaaacgtgtatatgacAAAGAATATACGCATTTTCATAACAAAATTTT
CAGCATGCAAcattcttttttgataaaaccaGTAAGTCTTTGATGAGGCT
CGGCtacttttctttttgagacTTTAAAATTCTTCTCATCACATGTTTAT
TTTTATggtattttatgttttaaaccCTGTTTTTACTAATCCCTCTCAAT
TAGCTTTAAATTTCGTCGTTT Coding sequence (CDS) from alignment at sc0000088:204923..208193+ >TCONS_00008839 ID=TCONS_00008839|Name=TCONS_00008839|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000088:204923..208193+ (Clytia hemisphaerica)
ATGCGCACGTTGGTTATTTTTTGTTGCTTGGTTGCAGCAATAAGCTGCCA
TGAACCACATAAACAGAAAAGAGgctTGGATCCAGAGAAACTACCAATTT
CGCAAATCTTCTTAAACAGTATTCGATCAAAGACCTCTGGAAGCAATGAA
GAGAGTCTGAAGCGCTCCAGACGTGGTTATAGAGCATATTTCTATAATTA
TTTGGATGAAATTGCAATGTCTATTTGTGCAGCATTACCTAGTGAAGGAC
CTGGTTTGATTTATGCTGTTCGCCGAACGTGTGGCGAAAAACCAACTTGT
AAAGATATCTGCACTGACCATGCTTTGAGAAAACAAGGACCACACGAGGT
TCAAGGATTAAACTGGGCATGCTCGGAATCACTACACGTGTATAAACGAC
AACCGTCATTAGCAGATAATTACGAAGAATACACCGACTCTCATAAATTA
GGATTGGCAATTTATCGTCATTATTCATGTACGATTGGTGGATGTGGACC
CAATTATTGCTGCTGCAGAGCATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008839-exon-sc0000088-1491911889:204923..205161 | TCONS_00008839-exon-sc0000088-1491911889:204923..205161 | Clytia hemisphaerica | exon |
| TCONS_00008839-exon-sc0000088-1510915933:204923..205161 | TCONS_00008839-exon-sc0000088-1510915933:204923..205161 | Clytia hemisphaerica | exon |
| TCONS_00008839-exon-sc0000088-1575043694:204923..205161 | TCONS_00008839-exon-sc0000088-1575043694:204923..205161 | Clytia hemisphaerica | exon |
| TCONS_00008839-exon-sc0000088-1491911889:206034..206297 | TCONS_00008839-exon-sc0000088-1491911889:206034..206297 | Clytia hemisphaerica | exon |
| TCONS_00008839-exon-sc0000088-1510915933:206034..206297 | TCONS_00008839-exon-sc0000088-1510915933:206034..206297 | Clytia hemisphaerica | exon |
| TCONS_00008839-exon-sc0000088-1575043694:206034..206297 | TCONS_00008839-exon-sc0000088-1575043694:206034..206297 | Clytia hemisphaerica | exon |
| TCONS_00008839-exon-sc0000088-1491911889:207020..208193 | TCONS_00008839-exon-sc0000088-1491911889:207020..208193 | Clytia hemisphaerica | exon |
| TCONS_00008839-exon-sc0000088-1510915933:207020..208193 | TCONS_00008839-exon-sc0000088-1510915933:207020..208193 | Clytia hemisphaerica | exon |
| TCONS_00008839-exon-sc0000088-1575043694:207020..208193 | TCONS_00008839-exon-sc0000088-1575043694:207020..208193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:204923..208193 + |
Blast
The following BLAST results are available for this feature:
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