TCONS_00008856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008856
Unique NameTCONS_00008856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008856 ID=TCONS_00008856|Name=TCONS_00008856|organism=Clytia hemisphaerica|type=transcript|length=2047bp
CTTAAATGCTTGATAACCTTCACTGATTTTCTTCTTACAGTGTAAAAGAa
ctcaaaatagaaaaaagaaaaaaataatttcacttTCCATATAAAGACAC
ATGGAGATGTCGGGCAAAATTGACTCCACCGAGCAGAACAATCACAACAG
CAGTGAACCAATTGATATCCGAGAAACCCAAGACGATGGTGTTGGTTTGT
GTGGATATTTGCTGACATTTTGTTCGCTCATCATGTTTGTATGCACCTTA
CCTTTGTCACTACTCTTTTGCTTGAAGATTGTTCAAGAATACGAGCGAGC
TGTAATCTTCAGAGTGGGTCGTCTCGTCAAAGGAGGAGCTCGTGGACCTG
GTATCTTCTTCATTTTACCATGCATTGATAACTACATCAAAGTCGATTTG
CGTGTTGTCTCATTTGATGTCCCTCCGCAAGAAATTTTGACCAGAGACAG
TGTCACCATTACTGTAGATGCTGTCACTTATTTCAGAATCTCGAATCCAA
TTCAATCAGTTTGTAATGTCGAAGATGCCCAAAGATCCACACGGTTGCTT
GCACAGACTACTTTGCGGAACGAGTTGGGTACGAAGAATCTCAGTGAAGT
TCTTTTGGAGAGAGATACAATAAGCCATTCAATTCAGCGAATTTTGGATG
CAGCTACGGATCCATGGGGAGTGAAAGTTGAACGTGTTGAGATTAAAGAT
GTCCGCCTTCCACAGATGTTGCAAAGAGCTATGGCTGCTGAAGCTGAGGC
CTCCAGAGAAGCAAAAGCTAAGGTGATTGCTGCTGAAGGAGAGATGAATG
CTGCTCGTGCTTTGAAAGAAGCTTCTGACGTCATTTGCGAATCACCACAA
GCTTTACAACTCCGTTATTTACAAACCTTGCAAACCATCTCAGCTGAAAA
GAATTCCACCATTATTTTCCCGTTACCTATTGACATGATCCAACGTACTT
TAGGAAAATAAGACCATCTTGTTATTCAATGCAATACATCTGCAGGTTGT
GTGGTTGTGTAATTCAAATCGTGAAATCGTGGTTGGTTGACACTACTCGG
TTGAATTGATCTTCTGAAAGGGGAATACATCAATTAAGCTTGAATTATAA
TCAAGTTTGTTAATACAATGGAGTGTCCATAACTCGTacacgcacgggga
acgcaaatttgttcaaattattgaaattttgagttacggagattggttta
taaggcattgtcaACTGAAGTttccagaaaacttgttcgactaaaaaagt
tatttgagttatagaggttcgagttatgaagactccaCTGTACTCTGTAT
TGCCATATCAACATCTTGAAGGTTGTTCATACAAAGTTATCACTGTCATG
TATCGCTTTGGCTTTGATTAAAGACATTTTTGTAAGTATGCGTTGAATAA
TAGCCTTGTTTTGAGTGCTaggtatacaccttttcgaccgtagctgccaa
ttgccgcgcgggcatttttgtccgttttatcaccctaaaaccgtcccagt
ctttttttacACCTatggattggatcgagttttgAGGGATAattgaataa
taaagtggcacgcgcctgaccgcgtgactacggtcgaaaaggcgtATTAT
CAGGATTGTATTCGTTCATGTAATTTTCTTCATTATTCTATATCACTACA
TACTTCTTCtcagtttttgtttgttttgaaattagcaTCAAATTTATTAA
CAAAGCTTCTCTATTCCAATAACGGACAAGTCTATCAACCGCAACCCGTA
AAATGATCCGTTAAGCGGTACAATCTCTGACGAAACTTTTCTAGAAGATG
TTTACTGCTCTTTGGccactttcaatttctttttaaatctatttaattat
ttatttaaGGATGCAGTTATTTCTTTAGGCAATTTATTCTGCGATTGAGT
AGGATGGTTAGTGAATAGACACTTTTACGagagtttttctttaaaattcc
aAGTCACTAATTTCTGATAAAATTATTTCCAAGAATTACCTACTACCTAC
TCTTTTGtgaaatgaatttcaagataATGATCATACCTTATAATTAC
Run BLAST on NCBI

transcript from alignment at sc0000088:430613..433960+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008856 ID=TCONS_00008856|Name=TCONS_00008856|organism=Clytia hemisphaerica|type=transcript|length=3348bp|location=Sequence derived from alignment at sc0000088:430613..433960+ (Clytia hemisphaerica)
CTTAAATGCTTGATAACCTTCACTGATTTTCTTCTTACAGTGTAAAAGAa
ctcaaaatagaaaaaagaaaaaaataatttcacttTCCATATAAAGACAC
ATGGAGATGTCGGGCAAAATTGACTCCACCGAGCAGAACAATCACAACAG
CAGTGAACCAATTGATATCCGAGAAACCCAAGGTAAAAAAACTGATTCAT
TTTTGCAAGAGAAAATAAATCTCGCGAAGTTGTATGAGATTATTGCTAAC
TCGCGAATTTCGTCCATgcggaattttcaaaattatattttcggATCGCG
AAATAAAATGGTGCAAAAATTTGTCTTCAGGGAAATGATAGTCTTTATGA
CTCACTTATAAAACTATAAGATGATTTTTACGAATCTACAGGaccaaaat
tttcattattttcttacCTTTTCAGAGATATTTAGTGATAAATGGACCCT
TTTCgaacgctataagcttacaggcGGTTCCGGAGGTCCAAGGGCTAATT
TCTGACCAAAATAAAGAACCCAGAGgctctaacccctctaaatcgcattt
TCATTTTAGACGATGGTGTTGGTTTGTGTGGATATTTGCTGACATTTTGT
TCGCTCATCATGTTTGTATGCACCTTACCTTTGTCACTACTCTTTTGCTT
GAAGGTATTTATCTTTCTTTGGCTTTGCTAAACTATCTGAGGCTCAGTAT
ACCTCAGACTCTAAAGACAAggcttcattctttttttaccttgcaaaaac
aacgaaaatctggtggactgttttacagtccgcctaagcaaaagcatatt
atcATATactactaccgggccacttaattgcgccatccagtctataaaaa
agccttaagtggACCCCGGACTAGGTATACCTTTGATAAACATACAACCA
ACAAgtcatacacattttttttagatTAACTTACCTGATAAGTGGCAGAG
ATGTTTTCTACCGAATTTTCATCAGCCGACCAGATCTTTCCACCAATTTC
TTGTCCTTGGCCCAAAAGAAATTCGTACTCTTTTGTGTTCTTTGGAAATC
CTTTACTTAGAGATCTAATTTCCATCGATGAGGTTTGCGACTGTTCTTTT
TCCTCTCATAGATTGTTCAAGAATACGAGCGAGCTGTAATCTTCAGAGTG
GGTCGTCTCGTCAAAGGAGGAGCTCGTGGACCTGGTATCTTCTTCATTTT
ACCATGCATTGATAACTACATCAAAGTCGATTTGCGTGTTGTCTCATTTG
ATGTCCCTCCGCAAGAAATTTTGACCAGAGACAGTGTCACCATTACTGTA
GATGCTGTCACTTATTTCAGAATCTCGAATCCAATTCAATCAGTTTGTAA
TGTCGAAGATGCCCAAAGATCCACACGGTTGCTTGCACAGACTACTTTGC
GGAACGAGTTGGGTACGAAGAATCTCAGTGAAGTTCTTTTGGAGAGAGAT
ACAATAAGCCATTCAATTCAGCGAATTTTGGATGCAGCTACGGATCCATG
GGGAGTGAAAGTTGAACGTGTTGAGATTAAAGATGTCCGCCTTCCACAGA
TGTTGCAAAGAGCTATGGCTGCTGAAGCTGAGGCCTCCAGAGAAGCAAAA
GCTAAGGTACGCACTTTTATACTTAGTTTGTTGGTCCTTGTAACCCCAAG
GACGGGATGGACTTTTACAATGTTAGCCACATTCATGTACAAGCATAACG
GCCAAAGTATTTTGGCTGAGTGTACATACAGAAAATAGCAGCGTggtaaa
tttaaggaaaagttAAGAAAGAGGACCGAAGAAATAACATTGAGAGATGC
TCGATTGACTGTTGGGATTTTAAGTTTGGatctggattttttaaccttgg
aacaatagaatttatatcCCAATAGGTATTTctataggaatttttatccc
tactgaggaaaaaagtttcaaaatggtTCTTGATGTCTTACTGTTTAAAT
TGATTTTACAATTACAATAATTAAAGATTTATAAGGATTAAAGAGTTCTA
GGGAGGAAGCTCCTCCCTTCTTTCGTATAGATCACTATAAAACACTCAAA
ATATTTCCTCCTCCTTTTCTTAGGTGATTGCTGCTGAAGGAGAGATGAAT
GCTGCTCGTGCTTTGAAAGAAGCTTCTGACGTCATTTGCGAATCACCACA
AGCTTTACAACTCCGTTATTTACAAACCTTGCAAACCATCTCAGCTGAAA
AGAATTCCACCATTATTTTCCCGTTACCTATTGACATGATCCAACGTACT
TTAGGAAAATAAGACCATCTTGTTATTCAATGCAATACATCTGCAGGTTG
TGTGGTTGTGTAATTCAAATCGTGAAATCGTGGTTGGTTGACACTACTCG
GTTGAATTGATCTTCTGAAAGGGGAATACATCAATTAAGCTTGAATTATA
ATCAAGTTTGTTAATACAATGGAGTGTCCATAACTCGTacacgcacgggg
aacgcaaatttgttcaaattattgaaattttgagttacggagattggttt
ataaggcattgtcaACTGAAGTttccagaaaacttgttcgactaaaaaag
ttatttgagttatagaggttcgagttatgaagactccaCTGTACTCTGTA
TTGCCATATCAACATCTTGAAGGTTGTTCATACAAAGTTATCACTGTCAT
GTATCGCTTTGGCTTTGATTAAAGACATTTTTGTAAGTATGCGTTGAATA
ATAGCCTTGTTTTGAGTGCTaggtatacaccttttcgaccgtagctgcca
attgccgcgcgggcatttttgtccgttttatcaccctaaaaccgtcccag
tctttttttacACCTatggattggatcgagttttgAGGGATAattgaata
ataaagtggcacgcgcctgaccgcgtgactacggtcgaaaaggcgtATTA
TCAGGATTGTATTCGTTCATGTAATTTTCTTCATTATTCTATATCACTAC
ATACTTCTTCtcagtttttgtttgttttgaaattagcaTCAAATTTATTA
ACAAAGCTTCTCTATTCCAATAACGGACAAGTCTATCAACCGCAACCCGT
AAAATGATCCGTTAAGCGGTACAATCTCTGACGAAACTTTTCTAGAAGAT
GTTTACTGCTCTTTGGccactttcaatttctttttaaatctatttaatta
tttatttaaGGATGCAGTTATTTCTTTAGGCAATTTATTCTGCGATTGAG
TAGGATGGTTAGTGAATAGACACTTTTACGagagtttttctttaaaattc
caAGTCACTAATTTCTGATAAAATTATTTCCAAGAATTACCTACTACCTA
CTCTTTTGtgaaatgaatttcaagataATGATCATACCTTATAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004970XLOC_004970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008856-exon-sc0000088-1491911889:430613..430794TCONS_00008856-exon-sc0000088-1491911889:430613..430794Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1510915933:430613..430794TCONS_00008856-exon-sc0000088-1510915933:430613..430794Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1575043694:430613..430794TCONS_00008856-exon-sc0000088-1575043694:430613..430794Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1491911889:431172..431266TCONS_00008856-exon-sc0000088-1491911889:431172..431266Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1510915933:431172..431266TCONS_00008856-exon-sc0000088-1510915933:431172..431266Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1575043694:431172..431266TCONS_00008856-exon-sc0000088-1575043694:431172..431266Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1491911889:431724..432218TCONS_00008856-exon-sc0000088-1491911889:431724..432218Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1510915933:431724..432218TCONS_00008856-exon-sc0000088-1510915933:431724..432218Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1575043694:431724..432218TCONS_00008856-exon-sc0000088-1575043694:431724..432218Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1491911889:432686..433960TCONS_00008856-exon-sc0000088-1491911889:432686..433960Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1510915933:432686..433960TCONS_00008856-exon-sc0000088-1510915933:432686..433960Clytia hemisphaericaexon
TCONS_00008856-exon-sc0000088-1575043694:432686..433960TCONS_00008856-exon-sc0000088-1575043694:432686..433960Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:430613..433960 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.2578	38.5011	102.616	113.93	24.5344	18.1497	40.526	42.9964	32.3893	27.935	42.3056	26.1754	34.518	23.7274	12.2453	15.9268	21.2787	24.2833	47.4044	49.6773	51.9802	49.2838	40.2468	44.3834	41.0324	44.0951	29.3646	24.4494	20.9763	18.1224
Blast
[Close]
BLAST of TCONS_00008856 vs. Swiss-Prot (Human)
Match: STOM (Erythrocyte band 7 integral membrane protein OS=Homo sapiens GN=STOM PE=1 SV=3)

HSP 1 Score: 345.895 bits (886), Expect = 3.846e-113
Identity = 178/272 (65.44%), Postives = 225/272 (82.72%), Query Frame = 2 
Query:  158 PIDIRETQDDGVGLCGYLLTFCSLIMFVCTLPLSLLFCLKIVQEYERAVIFRVGRLVKGGARGPGIFFILPCIDNYIKVDLRVVSFDVPPQEILTRDSVTITVDAVTYFRISNPIQSVCNVEDAQRSTRLLAQTTLRNELGTKNLSEVLLERDTISHSIQRILDAATDPWGVKVERVEIKDVRLPQMLQXXXXXXXXXXXXXXXXVIAAEGEMNAARALKEASDVICESPQALQLRYLQTLQTISAEKNSTIIFPLPIDMIQRTLG-K*DHL 970
            P   +++   G+G CG++L   S +  V T P+S+  C+KI++EYERA+IFR+GR+++GGA+GPG+FFILPC D++IKVD+R +SFD+PPQEILT+DSVTI+VD V Y+R+ N   +V N+ +A  +TRLLAQTTLRN LGTKNLS++L +R+ I+H++Q  LD ATD WG+KVERVEIKDV+LP  LQRAMAAEAEASREA+AKVIAAEGEMNA+RALKEAS VI ESP ALQLRYLQTL TI+AEKNSTI+FPLPIDM+Q  +G K  HL
Sbjct:   16 PDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIIGAKHSHL 287
The following BLAST results are available for this feature:
BLAST of TCONS_00008856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STOM3.846e-11365.44Erythrocyte band 7 integral membrane protein OS=Ho... [more]
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