TCONS_00008859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008859
Unique NameTCONS_00008859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008859 ID=TCONS_00008859|Name=TCONS_00008859|organism=Clytia hemisphaerica|type=transcript|length=983bp
aaattaataattaTGGAGGAGGATGTCTGGAATGAGAATGTTCGAGAAGC
CTCCAGTATTTGGCTGTTGATGGGCAAAGGTTATCGTATTTCCAGAAGCA
TCCGTTTACAATGGTTTTTCCAATATCTTAACAAGATCATTTCACCAAAA
TCTCCTGAAGAAATAGTAGATTCTGAAGAGGAACTTGAGGTTCTGGCAAT
ACTTGAGGGTGATAATGAGCATGACCTGCTCGCTACCAAACAAATACAAT
CCTCTGAATCTATTGATCAAAGTCTACTTCGTATCACACCAGAGACTCGA
CTAACATTTTTGGATCGGCAATATCGTTTTGTGTATTGTATTGATATGAG
TCCCTCTATGGCTATGGTGGATAGCAAAACTGGAGAAGTTTTGGTCGATG
ATATGTTCAACAGTATCAAAAACTCCCTAACTGGTCTTGTACAACCTtTT
TGTGTTGGAAACAGTCCTTTGGAGCTTTCTCCCAGGCTTGATATCACCGT
TCTTGCTCACACCTACACTGACAACAAAGAATGTCAAGTACTGATGCAGG
GattttgtttgaattcaaaGAACATCAATGATTTCTTATGTAAACTTAGA
AGAAAATTACGAGAATTGTGTGAACGGTTGATCAGTGGTATTGTCGAAAA
CAAGGACAAGGTTGACAATTCTCAAGGTTTTCAGAAGAATCAAACAAGTC
TCTTCCACATGATTCGTGACAGTCTACTAGCTTTGTACCTCCTTCCCAAC
AATGCTTCTGCAGCTATCGTTGTGGTCACTGATGGTGTGTTCATTCTGGA
AAACGCATATTTCACAGATGCATTACTAGCACAATGTAGAAACTCACAAT
CTGTTGTGTCATTCTTGCAAGTTGGAACTGGATTTCAAAGAGCCTCCGTA
GAGTTTGGTTTTGTACCTCATTGCGCATTGATGCAGTTTATTGCAACAGC
CACGTCTGGTGCTTACCTTTTGCAATGCCCACC
Run BLAST on NCBI

protein sequence of TCONS_00008859-protein

>TCONS_00008859-protein ID=TCONS_00008859-protein|Name=TCONS_00008859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
KLIIMEEDVWNENVREASSIWLLMGKGYRISRSIRLQWFFQYLNKIISPK
SPEEIVDSEEELEVLAILEGDNEHDLLATKQIQSSESIDQSLLRITPETR
LTFLDRQYRFVYCIDMSPSMAMVDSKTGEVLVDDMFNSIKNSLTGLVQPF
CVGNSPLELSPRLDITVLAHTYTDNKECQVLMQGFCLNSKNINDFLCKLR
RKLRELCERLISGIVENKDKVDNSQGFQKNQTSLFHMIRDSLLALYLLPN
NASAAIVVVTDGVFILENAYFTDALLAQCRNSQSVVSFLQVGTGFQRASV
EFGFVPHCALMQFIATATSGAYLLQCP
Run BLAST on NCBI

transcript from alignment at sc0000088:457775..463377+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008859 ID=TCONS_00008859|Name=TCONS_00008859|organism=Clytia hemisphaerica|type=transcript|length=5603bp|location=Sequence derived from alignment at sc0000088:457775..463377+ (Clytia hemisphaerica)
aaattaataattaTGGAGGAGGATGTCTGGAATGAGAATGTTCGAGAAGC
CTCCAGTATTTGGCTGTTGATGGGCAAAGGTTATCGTATTTCCAGAAGCA
TCCGTTTACAATGGTTTTTCCAATATCTTAACAAGATCATTTCACCAAAA
TCTCCTGAAGAAATAGTAAGTCTGTTGTAAAAAATTCTGTCTATTCTCTT
GTcatcttttgtcattttatctttTGCTTCTTGACACTAACCTTTTTATA
CTGAAGTGATTTCGTGCTGGTTCTACTGTTTTACTTCAGCATCAATCATA
TGCAAAACACATTTCCTAACCTTTTATACATGAAAAGTATGTTATTATAC
TGTATAGCTTTTCCCTTGACATTCCAGGTAGATTCTGAAGAGGAACTTGA
GGTTCTGGCAATACTTGAGGGTGATAATGAGCATGACCTGCTCGCTACCA
AACAAATACAATCCTCTGAATCTATTGATCAAAGTCTACTTCGTATCACA
CCAGAGACTCGNTATATATTTTTAGTGTAGCAAAAAAGTATGGAGGAACT
CAATACAGGCAGACGAcctaagaaagaaaagaaagaagagtctCCTGAGG
ATGCAATAGACCCTGAATTTTTTGTTCGTGTTtcttttcacaaattttta
GCAATATCTTTGGGACTGGCTTTGTATGCTTTCTTATGTTTTCATCCTTC
CCCGGAATCATATTTGGACAGAATGGGCGGACCTGGACAACGACTTCAAT
ATCTCCGCGAAAATTATATGATACATATGAGAATTGGAATGTTTATTGCT
ATACTGTTACATATTATTGAGGCATTGTATGCTATTAAACTTGCGACTCA
ACTTGGTTTGACACAGGAAACCATCCAAAAGTGGGCCATTCAAACAGGAA
TGATGGGTTACTCATCTCTGCAAGATCTTATCAAATATCATGATGAGAAA
GTGGTACAAAAGCAAAAACGAGAGTAATTTTTTATATGGACTACtaacat
tttcttaactttaacTTATTTACAGGATTTTTTTCTATTGAATATTTAGC
ATTTTTATACCTCTAGTATTTATTTTTACAGGACTATAAGATTGTTCTCC
ATTTAGAAGTTCCAGTTTACAATTCAAcataataattttataaatcatAT
CCGATGTGATGGATACTTGTTTTTAACTTTTCCAATTTACAGTGTTATTT
TGTTTTCTGATccttttaaagaattaaaaagtttcactaaaatagtatTA
CTGAATGTTAGTCGTCAGTCGTGCCAAAATTActtgaatctgattggttt
aatAAAGGAGTGAAATTAATTGTTAGTTGcattattaccactttttgtAC
TCTACGACAGGGGACACTTTGGCCCCCCTCTTATTCCTTTCTCTCACACA
CCTTTTGTAACAATAAAGTAACTTAACttcattattaaaaaaaaacaaag
aaacttcGCATTGTAGTAGATTCTTATTAAAAATCGCACTGCAACAGCTT
CTTTTTCGACTAAAGAAGAGAGAGGTTTTTCgaatgtttgtaaacaaaaa
aagttgGAGTCTCTTTCAATAGAAAAGtaagaaaggagaaaataccataa
tttttttcttttgttactcgtgattaatcgtttgaggggtaatcagatgg
tttgagattttttgcctgaagaaaccCTCTGTGGTTTTGAGTAATATCGC
AAAGTATTTTTGTCTAACTATATTCTAAAGTTGAGATATCacaatttaaa
atttctgaaaatgggttCTCACACGGTTCTaagttgaaattctattgttt
tttactcaaagtaaaaaaatagtAACTTAATTATCTCGATTTTGGGAAGT
ATTTAGGGGAAAATATTTCGAGGTTTTGCTCAGGAGGACAATAGAAGGAT
TTCACATGCCAAATATCCCAAACCacctgattatccctttaattgcactc
caaaacatACCATTACTAGTAAGTCAAGCAACACTTAACTATCAGAGTGA
TTCTGTAATCTTTCTGCAACACTTTGTTTGATACAGttattatataattt
gtttttcttcttaggGATTTAACTCCTTAATAagcaaaaattaaaagtga
AACTAAAAGAAATCAATAATTATGGAGGAGGATGTCTGGAATGAGAATGT
TCGAGAAGCCTCCAGTATTTGGCTGTTGATGGGCAAAGGTTATCGTATTT
CCAGAAGCATCCGTTTACAATGGTTTTTCCAATATCTTAACAAGATCATT
TCACCAAAATCTCCTGAAGAAATAGTAAGTCTGTTGTAAAAAATTCTGTC
TATTCTCTTGTcatcttttgtcattttatctttTGCTTCTTGACACTAAC
CTTTTTATACTGAAGTGATTTCGTGCTGGTTCTACTGTTTTACTTCAGCA
TCAATCATATGCAAAACACATTTCCTAACCTTTTATACATGAAAAGTATG
TTATTATACTGTATAGCTTTTCCCTTGACATTCCAGGTAGATTCTGAAGA
GGAACTTGAGGTTCTGGCAATACTTGAGGGTGATAATGAGCATGACCTGC
TCGCTACCAAACAAATACAATCCTCTGAATCTATTGATCAAAGTCTACTT
CGTATCACACCAGAGACTCGACTAACATTTTTGGATCGGCAATATCGTTT
TGTGTATTGTATTGATATGAGTCCCTCTATGGCTATGGTGGTAAGCTAGG
GCTCTGAGCTgacttttttaaaattatatggTTTTTACAAGAGCCTGATC
GGGGTGGTCTCGCTTAAATGGAGAAGTAAGGTGAAGTAAGGCTCAGTGTC
TATAagaaatgattattttttctttggacaaaatttttttaaatttaaat
tcagATAAGTTTTTAAAGCTTGGTTCATCACATACTAGTGTCATTTGCTA
ACTCAGCCCCCTTTGGACCCCTTTAGATATTAATTACAATGACTTTTTCT
AATCATTTTATGGTTATCCTTTATTGAAATTTTATAGGATAGCAAAACTG
GAGAAGTTTTGGTCGATGATATGTTCAACAGTATCAAAAACTCCCTAACT
GGTCTTGTACAACCTGTAAGTAAACTTGTATCATTCAATGCAactgaaaa
cattttcatttcctTCTCTGTTTTTATGGATCTGTATTTGTTGATTGCAA
TAATTGCTCAATTCTTTTAAAAGTAACCCATCCTGATCAGTTCATAACGA
TTTGAATCTAAATTTGAAAAGGGTTGTCTGGGATCATTATCAACATCTGT
GAGAAAGATAGGTGGGATTGCATGAAGCGTGACCAGTAAATTCAAAGCAA
CTAATAAGGATAATATAATTAAGGAAAAAATGTAATTCATTCATAATAAA
CTCATTAGCGTGATTATCATAAGTaatatttgattctttttagtTTTGTG
TTGGAAACAGTCCTTTGGAGCTTTCTCCCAGGCTTGATATCACCGTTCTT
GCTCACACCTACACTGACAACAAAGAATGTCAAGTAAGTTTGCTGTGTTT
TTAAGAAGGGTTTTTTTGTATATCTAATACTAAAGTATGTTAACCAAAAA
GGACTGGGGtaacttaaaatatttttcatcaaaataacatAAAGTTGCAC
TTTAATCGATAAACTTTGTTTCAAGTGGCCCACctcttttaatgaaaaac
aacAATATGAATTTGTGTATCATAACCAAAAAGCATCTAAAGCAGTCTTA
ATTCTGCAACAGTTTCTGGCTGGACAGAAGTGACCCCAAACCTTAAATAA
GCATACcacatttgaaaaaagttttggcCATAATACATTATTCTTCCTGA
ATTGGTGAATAATACTGCATTATGTCACCTTGATTGATTTGCACTATTAT
TGACTTATTAATTTTAGGTACTGATGCAGGGattttgtttgaattcaaaG
AACATCAATGATTTCTTATGTAAACTTAGAAGAAAATTACGAGAATTGTG
TGAACGGTTGATCAGTGGTATTGTCGAAAACAAGGTAGATTCTATGACTC
TTATATACTGAttattagattttcattttgtatGGATAAAACGAAAGAAG
AGACTGcttcatatttttgtttttgtgtgtagACGAAAAGTCATTGATTT
CAGGTACTACCTCAGTACCTCAGGTACCTGGGTACTATTCCACAATTTTT
CCAAACTGCAAAAGCTTGAAAACCATGTTAACAAGTTAATTATGCCTTTT
CGTTAACAGGACAAGGTTGACAATTCTCAAGGTTTTCAGAAGAATCAAAC
AAGTCTCTTCCACATGATTCGTGACAGTCTACTAGCTTTGTACCTCCTTC
CCAACAATGCTTCTGCAGGTTTGAAAATGATCTCATATGATAGCAGGCAC
TTCTGATGAATAAAATGAACGTTTCAATTCGAAATTTGAATATTGATTTT
TAtagaattttcatatttttaagaaaagaaagccaatttttttccaacaa
CCCTCTCAAAGTTAAAGGGAAAATGTGTCTCCTGCCATTTGCTGACATAC
AGTGTtattaaacaaaagaatttgagcaatttttccccTTTTGTTGATAA
TTCTCTTTTGTCAGCATTTTAAGAGGTGCGCATCCCTTCTtatcatgaaa
aagaaaatctttaacaaGAGATTTGTATCCAACTTTAATGTTTTACTTTA
GCTATCGTTGTGGTCACTGATGGTGTGTTCATTCTGGAAAACGCATATTT
CACAGATGCATTACTAGCACAATGTAGAAACTCACAATCTGTTGTGTCAT
TCTTGCAAGTTGGAACTGGATTTCAAAGAGCCTCCGTAGAGTAGGTTGAA
ACACATCTTTATATGGATCAAAATGGTGTCTTATCCTGTCTTATGCTCCC
TACTTTATCCACCCTTTTCAACAAAGTGTACTTACCCATGCAGTACCTTC
TCAGTACTCACTGtcttttcaaatttagatttgTGTATTTGACTAGCATA
ACGGTAATTCACTTCTTTTAAGTTAGGCGTTAAACATATTGGTCAACGTT
AATAACGGGCCTCGTGacatttaaagggacataaaagtaataaaatgtat
aaacattgcgcgaaccattgtcattaaagagaacaattaaaatcacgtgt
ccaaaacaaacttgtaaaacaattgaaacaatcaaaatcaggcatatttg
tttttattttttattttgacatgtgacattttgtatcccgctgcatacga
tttgtttacaatttcgtcagtacttttatgtccctttaacaaGTACCAAA
AGATATTAATGAGTGATCTGTTACCAGTCCTCTTATTTTGACCCAGCTAA
CAGCAAATTTCACCTGTCCAAACCACGAAAGTTATTACAATACGCTGGTC
GAAACATTCTGTTTGCTGCCTCAAGTGCAATTTATTGATAATCTATTCAC
TGGGCTTGCtaagagttaatttttcattcgtcAGCCTATCAAAAACAAAC
CAGAACCACCGAGTAATACTTTCCCGAACtttcattttgcctaaaacTTG
TGTGTCTTTTGTTCTCAAACAGGTTTGGTTTTGTACCTCATTGCGCATTG
ATGCAGTTTATTGCAACAGCCACGTCTGGTGCTTACCTTTTGCAATGCCC
ACC

Coding sequence (CDS) from alignment at sc0000088:457775..463377+

>TCONS_00008859 ID=TCONS_00008859|Name=TCONS_00008859|organism=Clytia hemisphaerica|type=CDS|length=7848bp|location=Sequence derived from alignment at sc0000088:457775..463377+ (Clytia hemisphaerica)
aaattaataattaTGGAGGAGGATGTCTGGAATGAGAATGTTCGAGAAGC
CTCCAGTATTTGGCTGTTGATGGGCAAAGGTTATCGTATTTCCAGAAGCA
TCCGTTTACAATGGTTTTTCCAATATCTTAACAAGATCATTTCACCAAAA
TCTCCTGAAGAAATAGTAGATTCTGAAGAGGAACTTGAGGTTCTGGCAAT
ACTTGAGGGTGATAATGAGCATGACCTGCTCGCTACCAAACAAATACAAT
CCTCTGAATCTATTGATCAAAGTCTACTTCGTATCACACCAGAGACTCGA
CTAACATTTTTGGATCGGCAATATCGTTTTGTGTATTGTATTGATATGAG
TCCCTCTATGGCTATGGTGGATAGCAAAACTGGAGAAGTTTTGGTCGATG
ATATGTTCAACAGTATCAAAAACTCCCTAACTGGTCTTGTACAACCTtTT
TGTGTTGGAAACAGTCCTTTGGAGCTTTCTCCCAGGCTTGATATCACCGT
TCTTGCTCACACCTACACTGACAACAAAGAATGTCAAGTACTGATGCAGG
GattttgtttgaattcaaaGAACATCAATGATTTCTTATGTAAACTTAGA
AGAAAATTACGAGAATTGTGTGAACGGTTGATCAGTGGTATTGTCGAAAA
CAAGGACAAGGTTGACAATTCTCAAGGTTTTCAGAAGAATCAAACAAGTC
TCTTCCACATGATTCGTGACAGTCTACTAGCTTTGTACCTCCTTCCCAAC
AATGCTTCTGCAGCTATCGTTGTGGTCACTGATGGTGTGTTCATTCTGGA
AAACGCATATTTCACAGATGCATTACTAGCACAATGTAGAAACTCACAAT
CTGTTGTGTCATTCTTGCAAGTTGGAACTGGATTTCAAAGAGCCTCCGTA
GAGTTTGGTTTTGTACCTCATTGCGCATTGATGCAGTTTATTGCAACAGC
CACGTCTGGTGCTTACCTTTTGCAATGCCCAaaattaataattaTGGAGG
AGGATGTCTGGAATGAGAATGTTCGAGAAGCCTCCAGTATTTGGCTGTTG
ATGGGCAAAGGTTATCGTATTTCCAGAAGCATCCGTTTACAATGGTTTTT
CCAATATCTTAACAAGATCATTTCACCAAAATCTCCTGAAGAAATAGTAG
ATTCTGAAGAGGAACTTGAGGTTCTGGCAATACTTGAGGGTGATAATGAG
CATGACCTGCTCGCTACCAAACAAATACAATCCTCTGAATCTATTGATCA
AAGTCTACTTCGTATCACACCAGAGACTCGACTAACATTTTTGGATCGGC
AATATCGTTTTGTGTATTGTATTGATATGAGTCCCTCTATGGCTATGGTG
GATAGCAAAACTGGAGAAGTTTTGGTCGATGATATGTTCAACAGTATCAA
AAACTCCCTAACTGGTCTTGTACAACCTtTTTGTGTTGGAAACAGTCCTT
TGGAGCTTTCTCCCAGGCTTGATATCACCGTTCTTGCTCACACCTACACT
GACAACAAAGAATGTCAAGTACTGATGCAGGGattttgtttgaattcaaa
GAACATCAATGATTTCTTATGTAAACTTAGAAGAAAATTACGAGAATTGT
GTGAACGGTTGATCAGTGGTATTGTCGAAAACAAGGACAAGGTTGACAAT
TCTCAAGGTTTTCAGAAGAATCAAACAAGTCTCTTCCACATGATTCGTGA
CAGTCTACTAGCTTTGTACCTCCTTCCCAACAATGCTTCTGCAGCTATCG
TTGTGGTCACTGATGGTGTGTTCATTCTGGAAAACGCATATTTCACAGAT
GCATTACTAGCACAATGTAGAAACTCACAATCTGTTGTGTCATTCTTGCA
AGTTGGAACTGGATTTCAAAGAGCCTCCGTAGAGTTTGGTTTTGTACCTC
ATTGCGCATTGATGCAGTTTATTGCAACAGCCACGTCTGGTGCTTACCTT
TTGCAATGCCCAaaattaataattaTGGAGGAGGATGTCTGGAATGAGAA
TGTTCGAGAAGCCTCCAGTATTTGGCTGTTGATGGGCAAAGGTTATCGTA
TTTCCAGAAGCATCCGTTTACAATGGTTTTTCCAATATCTTAACAAGATC
ATTTCACCAAAATCTCCTGAAGAAATAGTAGATTCTGAAGAGGAACTTGA
GGTTCTGGCAATACTTGAGGGTGATAATGAGCATGACCTGCTCGCTACCA
AACAAATACAATCCTCTGAATCTATTGATCAAAGTCTACTTCGTATCACA
CCAGAGACTCGACTAACATTTTTGGATCGGCAATATCGTTTTGTGTATTG
TATTGATATGAGTCCCTCTATGGCTATGGTGGATAGCAAAACTGGAGAAG
TTTTGGTCGATGATATGTTCAACAGTATCAAAAACTCCCTAACTGGTCTT
GTACAACCTtTTTGTGTTGGAAACAGTCCTTTGGAGCTTTCTCCCAGGCT
TGATATCACCGTTCTTGCTCACACCTACACTGACAACAAAGAATGTCAAG
TACTGATGCAGGGattttgtttgaattcaaaGAACATCAATGATTTCTTA
TGTAAACTTAGAAGAAAATTACGAGAATTGTGTGAACGGTTGATCAGTGG
TATTGTCGAAAACAAGGACAAGGTTGACAATTCTCAAGGTTTTCAGAAGA
ATCAAACAAGTCTCTTCCACATGATTCGTGACAGTCTACTAGCTTTGTAC
CTCCTTCCCAACAATGCTTCTGCAGCTATCGTTGTGGTCACTGATGGTGT
GTTCATTCTGGAAAACGCATATTTCACAGATGCATTACTAGCACAATGTA
GAAACTCACAATCTGTTGTGTCATTCTTGCAAGTTGGAACTGGATTTCAA
AGAGCCTCCGTAGAGTTTGGTTTTGTACCTCATTGCGCATTGATGCAGTT
TATTGCAACAGCCACGTCTGGTGCTTACCTTTTGCAATGCCCAaaattaa
taattaTGGAGGAGGATGTCTGGAATGAGAATGTTCGAGAAGCCTCCAGT
ATTTGGCTGTTGATGGGCAAAGGTTATCGTATTTCCAGAAGCATCCGTTT
ACAATGGTTTTTCCAATATCTTAACAAGATCATTTCACCAAAATCTCCTG
AAGAAATAGTAGATTCTGAAGAGGAACTTGAGGTTCTGGCAATACTTGAG
GGTGATAATGAGCATGACCTGCTCGCTACCAAACAAATACAATCCTCTGA
ATCTATTGATCAAAGTCTACTTCGTATCACACCAGAGACTCGACTAACAT
TTTTGGATCGGCAATATCGTTTTGTGTATTGTATTGATATGAGTCCCTCT
ATGGCTATGGTGGATAGCAAAACTGGAGAAGTTTTGGTCGATGATATGTT
CAACAGTATCAAAAACTCCCTAACTGGTCTTGTACAACCTtTTTGTGTTG
GAAACAGTCCTTTGGAGCTTTCTCCCAGGCTTGATATCACCGTTCTTGCT
CACACCTACACTGACAACAAAGAATGTCAAGTACTGATGCAGGGattttg
tttgaattcaaaGAACATCAATGATTTCTTATGTAAACTTAGAAGAAAAT
TACGAGAATTGTGTGAACGGTTGATCAGTGGTATTGTCGAAAACAAGGAC
AAGGTTGACAATTCTCAAGGTTTTCAGAAGAATCAAACAAGTCTCTTCCA
CATGATTCGTGACAGTCTACTAGCTTTGTACCTCCTTCCCAACAATGCTT
CTGCAGCTATCGTTGTGGTCACTGATGGTGTGTTCATTCTGGAAAACGCA
TATTTCACAGATGCATTACTAGCACAATGTAGAAACTCACAATCTGTTGT
GTCATTCTTGCAAGTTGGAACTGGATTTCAAAGAGCCTCCGTAGAGTTTG
GTTTTGTACCTCATTGCGCATTGATGCAGTTTATTGCAACAGCCACGTCT
GGTGCTTACCTTTTGCAATGCCCAaaattaataattaTGGAGGAGGATGT
CTGGAATGAGAATGTTCGAGAAGCCTCCAGTATTTGGCTGTTGATGGGCA
AAGGTTATCGTATTTCCAGAAGCATCCGTTTACAATGGTTTTTCCAATAT
CTTAACAAGATCATTTCACCAAAATCTCCTGAAGAAATAGTAGATTCTGA
AGAGGAACTTGAGGTTCTGGCAATACTTGAGGGTGATAATGAGCATGACC
TGCTCGCTACCAAACAAATACAATCCTCTGAATCTATTGATCAAAGTCTA
CTTCGTATCACACCAGAGACTCGACTAACATTTTTGGATCGGCAATATCG
TTTTGTGTATTGTATTGATATGAGTCCCTCTATGGCTATGGTGGATAGCA
AAACTGGAGAAGTTTTGGTCGATGATATGTTCAACAGTATCAAAAACTCC
CTAACTGGTCTTGTACAACCTtTTTGTGTTGGAAACAGTCCTTTGGAGCT
TTCTCCCAGGCTTGATATCACCGTTCTTGCTCACACCTACACTGACAACA
AAGAATGTCAAGTACTGATGCAGGGattttgtttgaattcaaaGAACATC
AATGATTTCTTATGTAAACTTAGAAGAAAATTACGAGAATTGTGTGAACG
GTTGATCAGTGGTATTGTCGAAAACAAGGACAAGGTTGACAATTCTCAAG
GTTTTCAGAAGAATCAAACAAGTCTCTTCCACATGATTCGTGACAGTCTA
CTAGCTTTGTACCTCCTTCCCAACAATGCTTCTGCAGCTATCGTTGTGGT
CACTGATGGTGTGTTCATTCTGGAAAACGCATATTTCACAGATGCATTAC
TAGCACAATGTAGAAACTCACAATCTGTTGTGTCATTCTTGCAAGTTGGA
ACTGGATTTCAAAGAGCCTCCGTAGAGTTTGGTTTTGTACCTCATTGCGC
ATTGATGCAGTTTATTGCAACAGCCACGTCTGGTGCTTACCTTTTGCAAT
GCCCAaaattaataattaTGGAGGAGGATGTCTGGAATGAGAATGTTCGA
GAAGCCTCCAGTATTTGGCTGTTGATGGGCAAAGGTTATCGTATTTCCAG
AAGCATCCGTTTACAATGGTTTTTCCAATATCTTAACAAGATCATTTCAC
CAAAATCTCCTGAAGAAATAGTAGATTCTGAAGAGGAACTTGAGGTTCTG
GCAATACTTGAGGGTGATAATGAGCATGACCTGCTCGCTACCAAACAAAT
ACAATCCTCTGAATCTATTGATCAAAGTCTACTTCGTATCACACCAGAGA
CTCGACTAACATTTTTGGATCGGCAATATCGTTTTGTGTATTGTATTGAT
ATGAGTCCCTCTATGGCTATGGTGGATAGCAAAACTGGAGAAGTTTTGGT
CGATGATATGTTCAACAGTATCAAAAACTCCCTAACTGGTCTTGTACAAC
CTtTTTGTGTTGGAAACAGTCCTTTGGAGCTTTCTCCCAGGCTTGATATC
ACCGTTCTTGCTCACACCTACACTGACAACAAAGAATGTCAAGTACTGAT
GCAGGGattttgtttgaattcaaaGAACATCAATGATTTCTTATGTAAAC
TTAGAAGAAAATTACGAGAATTGTGTGAACGGTTGATCAGTGGTATTGTC
GAAAACAAGGACAAGGTTGACAATTCTCAAGGTTTTCAGAAGAATCAAAC
AAGTCTCTTCCACATGATTCGTGACAGTCTACTAGCTTTGTACCTCCTTC
CCAACAATGCTTCTGCAGCTATCGTTGTGGTCACTGATGGTGTGTTCATT
CTGGAAAACGCATATTTCACAGATGCATTACTAGCACAATGTAGAAACTC
ACAATCTGTTGTGTCATTCTTGCAAGTTGGAACTGGATTTCAAAGAGCCT
CCGTAGAGTTTGGTTTTGTACCTCATTGCGCATTGATGCAGTTTATTGCA
ACAGCCACGTCTGGTGCTTACCTTTTGCAATGCCCAaaattaataattaT
GGAGGAGGATGTCTGGAATGAGAATGTTCGAGAAGCCTCCAGTATTTGGC
TGTTGATGGGCAAAGGTTATCGTATTTCCAGAAGCATCCGTTTACAATGG
TTTTTCCAATATCTTAACAAGATCATTTCACCAAAATCTCCTGAAGAAAT
AGTAGATTCTGAAGAGGAACTTGAGGTTCTGGCAATACTTGAGGGTGATA
ATGAGCATGACCTGCTCGCTACCAAACAAATACAATCCTCTGAATCTATT
GATCAAAGTCTACTTCGTATCACACCAGAGACTCGACTAACATTTTTGGA
TCGGCAATATCGTTTTGTGTATTGTATTGATATGAGTCCCTCTATGGCTA
TGGTGGATAGCAAAACTGGAGAAGTTTTGGTCGATGATATGTTCAACAGT
ATCAAAAACTCCCTAACTGGTCTTGTACAACCTtTTTGTGTTGGAAACAG
TCCTTTGGAGCTTTCTCCCAGGCTTGATATCACCGTTCTTGCTCACACCT
ACACTGACAACAAAGAATGTCAAGTACTGATGCAGGGattttgtttgaat
tcaaaGAACATCAATGATTTCTTATGTAAACTTAGAAGAAAATTACGAGA
ATTGTGTGAACGGTTGATCAGTGGTATTGTCGAAAACAAGGACAAGGTTG
ACAATTCTCAAGGTTTTCAGAAGAATCAAACAAGTCTCTTCCACATGATT
CGTGACAGTCTACTAGCTTTGTACCTCCTTCCCAACAATGCTTCTGCAGC
TATCGTTGTGGTCACTGATGGTGTGTTCATTCTGGAAAACGCATATTTCA
CAGATGCATTACTAGCACAATGTAGAAACTCACAATCTGTTGTGTCATTC
TTGCAAGTTGGAACTGGATTTCAAAGAGCCTCCGTAGAGTTTGGTTTTGT
ACCTCATTGCGCATTGATGCAGTTTATTGCAACAGCCACGTCTGGTGCTT
ACCTTTTGCAATGCCCAaaattaataattaTGGAGGAGGATGTCTGGAAT
GAGAATGTTCGAGAAGCCTCCAGTATTTGGCTGTTGATGGGCAAAGGTTA
TCGTATTTCCAGAAGCATCCGTTTACAATGGTTTTTCCAATATCTTAACA
AGATCATTTCACCAAAATCTCCTGAAGAAATAGTAGATTCTGAAGAGGAA
CTTGAGGTTCTGGCAATACTTGAGGGTGATAATGAGCATGACCTGCTCGC
TACCAAACAAATACAATCCTCTGAATCTATTGATCAAAGTCTACTTCGTA
TCACACCAGAGACTCGACTAACATTTTTGGATCGGCAATATCGTTTTGTG
TATTGTATTGATATGAGTCCCTCTATGGCTATGGTGGATAGCAAAACTGG
AGAAGTTTTGGTCGATGATATGTTCAACAGTATCAAAAACTCCCTAACTG
GTCTTGTACAACCTtTTTGTGTTGGAAACAGTCCTTTGGAGCTTTCTCCC
AGGCTTGATATCACCGTTCTTGCTCACACCTACACTGACAACAAAGAATG
TCAAGTACTGATGCAGGGattttgtttgaattcaaaGAACATCAATGATT
TCTTATGTAAACTTAGAAGAAAATTACGAGAATTGTGTGAACGGTTGATC
AGTGGTATTGTCGAAAACAAGGACAAGGTTGACAATTCTCAAGGTTTTCA
GAAGAATCAAACAAGTCTCTTCCACATGATTCGTGACAGTCTACTAGCTT
TGTACCTCCTTCCCAACAATGCTTCTGCAGCTATCGTTGTGGTCACTGAT
GGTGTGTTCATTCTGGAAAACGCATATTTCACAGATGCATTACTAGCACA
ATGTAGAAACTCACAATCTGTTGTGTCATTCTTGCAAGTTGGAACTGGAT
TTCAAAGAGCCTCCGTAGAGTTTGGTTTTGTACCTCATTGCGCATTGATG
CAGTTTATTGCAACAGCCACGTCTGGTGCTTACCTTTTGCAATGCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004971XLOC_004971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008859-exon-sc0000088-1491911889:457775..457939TCONS_00008859-exon-sc0000088-1491911889:457775..457939Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1510915933:457775..457939TCONS_00008859-exon-sc0000088-1510915933:457775..457939Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1575043694:457775..457939TCONS_00008859-exon-sc0000088-1575043694:457775..457939Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1491911889:460261..460464TCONS_00008859-exon-sc0000088-1491911889:460261..460464Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1510915933:460261..460464TCONS_00008859-exon-sc0000088-1510915933:460261..460464Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1575043694:460261..460464TCONS_00008859-exon-sc0000088-1575043694:460261..460464Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1491911889:460762..460839TCONS_00008859-exon-sc0000088-1491911889:460762..460839Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1510915933:460762..460839TCONS_00008859-exon-sc0000088-1510915933:460762..460839Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1575043694:460762..460839TCONS_00008859-exon-sc0000088-1575043694:460762..460839Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1491911889:461168..461257TCONS_00008859-exon-sc0000088-1491911889:461168..461257Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1510915933:461168..461257TCONS_00008859-exon-sc0000088-1510915933:461168..461257Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1575043694:461168..461257TCONS_00008859-exon-sc0000088-1575043694:461168..461257Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1491911889:461642..461758TCONS_00008859-exon-sc0000088-1491911889:461642..461758Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1510915933:461642..461758TCONS_00008859-exon-sc0000088-1510915933:461642..461758Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1575043694:461642..461758TCONS_00008859-exon-sc0000088-1575043694:461642..461758Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1491911889:461984..462092TCONS_00008859-exon-sc0000088-1491911889:461984..462092Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1510915933:461984..462092TCONS_00008859-exon-sc0000088-1510915933:461984..462092Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1575043694:461984..462092TCONS_00008859-exon-sc0000088-1575043694:461984..462092Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1491911889:462426..462564TCONS_00008859-exon-sc0000088-1491911889:462426..462564Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1510915933:462426..462564TCONS_00008859-exon-sc0000088-1510915933:462426..462564Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1575043694:462426..462564TCONS_00008859-exon-sc0000088-1575043694:462426..462564Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1491911889:463297..463377TCONS_00008859-exon-sc0000088-1491911889:463297..463377Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1510915933:463297..463377TCONS_00008859-exon-sc0000088-1510915933:463297..463377Clytia hemisphaericaexon
TCONS_00008859-exon-sc0000088-1575043694:463297..463377TCONS_00008859-exon-sc0000088-1575043694:463297..463377Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008859-proteinTCONS_00008859-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:457775..463377 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0803318	0.34651	0	1.26937	0.053351	1.18959	0	0.543887	1.50846	0	0	0	5.2422e-10	0.470397	0.961873	1.1845	0.17053	1.63484	1.48376	1.58333	0.966361	0	0.0841868	0	9.72353e-09	1.28499	0.854891	0.556797	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
[Close]
BLAST of TCONS_00008859 vs. Swiss-Prot (Human)
Match: SZT2 (KICSTOR complex protein SZT2 OS=Homo sapiens GN=SZT2 PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.634e-46
Identity = 115/335 (34.33%), Postives = 180/335 (53.73%), Query Frame = 1 
Query:   40 VREASSIWLLMGKGYRISRSIRLQWFFQYLNKIISPKSPXXXXXXXXXXXXXAILEGDNEHDLLAT--KQIQSSESIDQSLLRITPETRLTFLDRQYRFVYCIDMSPSMAMVDSKTGEVLVDDMFNSIKNSLTGLVQPFCVGNSPLELSPRLDITVLAHTYTDNKEC-QVLMQGFCLNSKNINDFXXXXXXXXXXXXXXXISGIVENKDKVDNSQGFQKNQTS------------------LFHMIRDSLLALYLLPNNASAAIVVVTDGVFILENAYFTDALLAQCRNSQSVVSFLQVGTGFQRASVEFGFVPHCALMQFIATATSGAYLLQCP 981
            V EA  ++LLM K YRISR++RL WF  +L++ +   +P+E+           +L+ + E ++L+      Q  E +      + P TR+TFL  QYRFV  +D+SPS  +VD  TGE+L D++F+++   L GL++PF V  S ++  P + +T+ A++     +  QVL+QG  L+      FL ++  +L    +++ + + +  D    SQ   ++  S                  L  MIR  +LAL LLP+N+SA I+V+TDGV  + +    + LL Q R+     SF+QVG G       FG VP+  LM+FIA AT G+YL  CP
Sbjct:   10 VEEAGQVFLLMKKDYRISRNVRLAWFLSHLHQTVQ-ATPQEM-----------LLQSEQELEVLSVLPPGWQPDEPVVPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTGIVDDSTGEILFDEVFHALSRCLGGLLRPFRVPGSCIDFQPEIYVTIQAYSSIIGLQSHQVLVQGCLLDPSQREVFLQQIYEQLCLFEDKVATMLQQQYDP--QSQAEDQSPDSGDLLGRKVGVSMVTADLGLVSMIRQGILALQLLPSNSSAGIIVITDGVTSVPDVAVCETLLNQLRSGTVACSFVQVG-GVYSYDCSFGHVPNVELMKFIAMATFGSYLSTCP 329
The following BLAST results are available for this feature:
BLAST of TCONS_00008859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SZT22.634e-4634.33KICSTOR complex protein SZT2 OS=Homo sapiens GN=SZ... [more]
back to top