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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008872 ID=TCONS_00008872|Name=TCONS_00008872|organism=Clytia hemisphaerica|type=transcript|length=3845bpRun BLAST on NCBI transcript from alignment at sc0000088:467208..485917+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008872 ID=TCONS_00008872|Name=TCONS_00008872|organism=Clytia hemisphaerica|type=transcript|length=18710bp|location=Sequence derived from alignment at sc0000088:467208..485917+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008872 vs. Swiss-Prot (Human)
Match: SZT2 (KICSTOR complex protein SZT2 OS=Homo sapiens GN=SZT2 PE=1 SV=3) HSP 1 Score: 276.944 bits (707), Expect = 1.843e-75 Identity = 155/520 (29.81%), Postives = 261/520 (50.19%), Query Frame = 2
Query: 11 THVIINVSGQYEFLVDITXXXXXXXXXXXXXYRKIVLQRFEQTMRSLEQSDKLLVHLQSFSSQPLASKIPETIAKGSSVFCMASNTNSPVLSWQYGKGKKSSKSPEAVFAGFWKPVVSLDTKMWSKWFHCHRIRILMKHDRPITKELFVASATGQYASVPCRMSISAYNKLIKDWCDFTLLENHTYVKFLTHSDNDRPHSFCLLRLTPKGLCIIMRLAFLLGTPGIERSKVTEDFRKQLSTMSAQLDRSIQTSETQK-----------------------------GEEPCIIFLNKQFERILVKYDGIPDEIRGSSLPGSNSTTFSPVLQEASMELXXXXXGSPLTVFGQYLFNQRWVWSMNVNATTSFEAKSIAQILNTIMKQRLHEGFNFCSFGKGIVSLTKEV---NVTVNSSEENISNCCTIQYIMFPPHQKLKHQEDSTESDGGV---LHEFAPDLQMVVEVWVEPQMGTVDIPDSPLSYIHGSEYQRIPQKIFEMDAQIVTEMTSYLVLHKTC 1465
T V + + G Y+ L D++ + +S YR V++RF T++S+ Q+D++L HLQSFSS P +P++ G +F + + +PVLS Q S S A FA +WKPV+S+D W +W H HR+ ++++HD PI K L + G+Y+++ CR+S S+ L++DW F L+E ++YVK L+ + + P+SF ++R+ K C+++RL F +GTP R K+ R+++ + + +Q+ E + PC++ L+K +++L++Y+ +P + R L P++ S +YL++QRW+WS+ + +IAQ+L+ + + RL EGF+F G+GI+++ E+ N + + C +QYI+FPPH ST+ D V E +L +V EVWVEPQ G V ++ Y IPQ + DA + M S+ L + C
Sbjct: 457 TRVEVTMEGGYDILHDVSCALRQPIRSL---YRTHVIRRFWNTLQSINQTDQMLAHLQSFSSVPEHFTLPDSTKSGVPLFYIPPGSTTPVLSLQ----PSGSDSSHAQFAAYWKPVLSMDANSWQRWLHMHRLVLILEHDTPIPKHLHTPGSNGRYSTIQCRISHSSLTSLLRDWSSFVLVEGYSYVKLLSSAPDQPPNSFYMVRIISKAPCMVLRLGFPIGTPAPARHKIVSGLREEI--LRLRFPHRVQSKEPTPKVKRKGLGGAGGGSSPSKSPPVLGPQQALSDRPCLVVLHKPLDKLLIRYEKLPLDYRAPFLLTLEPPGPLPLVSGRSASSSL-------ASLSRYLYHQRWLWSVPSGLAPALPLSAIAQLLSILTEVRLSEGFHFACSGEGIINMVLELPIQNEPPGQAAAEEKHTCVVQYILFPPHSTSTKDSFSTDDDNDVEVEALEGDSELNLVTEVWVEPQYGRVGPGPGIWKHLQDLTYSEIPQALHPRDAACIGSMLSFEYLIQLC 960 HSP 2 Score: 90.5077 bits (223), Expect = 5.029e-18 Identity = 91/338 (26.92%), Postives = 142/338 (42.01%), Query Frame = 2
Query: 2504 NGECENVVLANEIKKLFMDLLGNYFQQVPDNPYYMFFNDGQSTDIEAEENQVADKVNAECE-EEYETDSQDASSAHSSLTAFSHNPS---EYLSDNLSS-GPENEHAREEKNTDRMEEEEDN--IFDSSDESCEER------PMFLHLVCSVHYKANDEHVLRPIGVISLPTCLGEIFNSI-SESLGAIDPYSTSMTVTLDLICLSQPTEPQEDEDWKASKDFLLRRQNSSDSFYSNHTQESETAREKRLVSQVSRDESYIRQASDSIEHLPLKQRAAVENACREIEWLLEDEIASALRRQAPITEENLNRVAEHIRCSYSQNKNCVFQKKHFNFVTG 3475
GE L + I++ F+++ +F+ VP NP+Y F+ S + D+ ++ E E E ++ ++ + S +P EY S GP + + D + +ED+ I + E P+FLHL CSV + V V SLPTCLG++ +S+ +G P ++VTLD+ L T P E E AS R + S + + + + R + R + +L R A+E EI WLLEDE+ ALRR L+R A HI S ++ C+ Q +FV G
Sbjct: 1424 RGEAHGA-LHSVIQEKFLEISRLHFRTVPSNPHYFFYCPPSSRREDEGPRDTVDRKISDLEFSEAELMGEEGDTSACCVVTES-DPELEVEYRESRESDLGPAGLDSASLSDVDTVNPDEDSFSILGGDSPTGPESFLHDLPPLFLHLTCSVRLRGQHSSV----PVCSLPTCLGQVLSSLEGPPVGGRVPLR-DLSVTLDVFML---TLPLEVELPTASDPQHHRSTSESSASFPRSPGQPSSLRSDDGLGPPLPPPEEERHPG--LSNLATPHRLAIETTMNEIRWLLEDEMVGALRRGGIPQSPALHRAAAHIHSSPGRS-TCLRQTLPLSFVFG 1748 The following BLAST results are available for this feature:
BLAST of TCONS_00008872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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