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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008889 ID=TCONS_00008889|Name=TCONS_00008889|organism=Clytia hemisphaerica|type=transcript|length=2549bpRun BLAST on NCBI protein sequence of TCONS_00008889-protein >TCONS_00008889-protein ID=TCONS_00008889-protein|Name=TCONS_00008889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=776bp MKQKKVKEEGEHEVCITVTIAKASITDQLPDGKKSESAPQVQNYLHCQYKRun BLAST on NCBI transcript from alignment at sc0000088:137851..146633- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008889 ID=TCONS_00008889|Name=TCONS_00008889|organism=Clytia hemisphaerica|type=transcript|length=8783bp|location=Sequence derived from alignment at sc0000088:137851..146633- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000088:137851..146633- >TCONS_00008889 ID=TCONS_00008889|Name=TCONS_00008889|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at sc0000088:137851..146633- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00008889 vs. Swiss-Prot (Human)
Match: YC006 (Uncharacterized protein FLJ43738 OS=Homo sapiens PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.814e-45 Identity = 121/410 (29.51%), Postives = 190/410 (46.34%), Query Frame = 2
Query: 1421 PAYVKYKFYGTVEHRSFAKEHSRNIKFNDSNVILLGTLDKNHLFEYLRGPPLKIEVHDRDIK-ETPKKKSSVFGSKPEDENIFNTAYAGGTLLGLTNQAKTDSNT----------YGVAEFDLSELLNGERILHHTSPIRAC--KQSHDILNNKASTV---------------PVGDYLESGSELKIKVELVRSLTEQYYAIDTRDNPTSLMSSTSVNQPTHGEQQQLLSSTTVDSKGNLETITSSQEVNLKQQTNDQPSCPYGRIVYIFDYKNKDFLGKILGLTTEINAKSLDFWTYPKHVIEAALSTYKLSESQQNDRTLDIITGCQIIDGEYHIFVLEGLAHQGVKRLWD-------ELEHPKLDGGGFFRVLYNSDMTFANRLYISLDVDLARIRLHQPISNIVKQ 2545
P Y KY+F+ T H++ + H ++ F D NVI LG L + L EYL GPP+ +EVHDRD K E +K +FG P D + L + +T++N YG+A+ ++LL G + L+ PI +C + +H +++ V P G+YLE+ S+LK++V++ L A D P G Q +GRI+++FD+K L +L T INAK+L +YP ++ LS +K+ Q + LD++TG ++DG+ H+F+LEGLA QG+++LW+ EH K ++VLYNS + F +RLY L+ L + L QP +++Q
Sbjct: 2 PVYCKYQFHKTPVHKTKGEPHGTHVYFQDINVIFLGALHPSDLREYLEGPPMVVEVHDRDRKSEECSQKPVLFGEDPLDSYL--------NFQALISPRETENNPFESQNKMWYPYGIAQVSFADLLLGHKYLNLAVPIHSCEVQPTHCGQDSRRRKVVGLGVPRDGHQHGPMPRGNYLEADSQLKLRVDIAVPLRAGARAAD----------------PDLGGSQ------------------------------------FGRIIFVFDFKKVSLLHSLLQDITMINAKALGLDSYPVRTLQQILSAFKVRVRVQEQQHLDVLTGFHLLDGKTHLFILEGLADQGLRQLWENHQSWIPRSEHRK------YKVLYNSQLLFRSRLYGDLEAILYHVHLFQPTELLLQQ 345 The following BLAST results are available for this feature:
BLAST of TCONS_00008889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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