TCONS_00008934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008934
Unique NameTCONS_00008934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008934 ID=TCONS_00008934|Name=TCONS_00008934|organism=Clytia hemisphaerica|type=transcript|length=335bp
AAAACCTTTATTCGTCCAATCGTTGAGTATGCCTCCACAGTATGGGATCC
AGTTGGTAATCAGTCGTTAACATATCAACTAGAATGTGTCCAGAGAAAAT
CAGTCCGTTGGATATGCAACCAATGGAGCTATGAAGCATCCCCAACTGCT
ATGATTGATAATCTTAAGCTTCAAACATTGGATAAGAGACGACGAATTAA
CCGGTTATCAACGCTGTACCGATTCCACCATGGTCTTAAGTTCATGCCAA
GTCAAACCATCAACCAACAACGATGCACTAACTTACGTTTTCAACCTATA
CAAGGCGCCATACTACGTTACACATATTCATTCTA
Run BLAST on NCBI

protein sequence of TCONS_00008934-protein

>TCONS_00008934-protein ID=TCONS_00008934-protein|Name=TCONS_00008934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
KTFIRPIVEYASTVWDPVGNQSLTYQLECVQRKSVRWICNQWSYEASPTA
MIDNLKLQTLDKRRRINRLSTLYRFHHGLKFMPSQTINQQRCTNLRFQPI
QGAILRYTYSF
Run BLAST on NCBI

transcript from alignment at sc0000088:419699..420033

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008934 ID=TCONS_00008934|Name=TCONS_00008934|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at sc0000088:419699..420033 (Clytia hemisphaerica)
TAGAATGAATATGTGTAACGTAGTATGGCGCCTTGTATAGGTTGAAAACG
TAAGTTAGTGCATCGTTGTTGGTTGATGGTTTGACTTGGCATGAACTTAA
GACCATGGTGGAATCGGTACAGCGTTGATAACCGGTTAATTCGTCGTCTC
TTATCCAATGTTTGAAGCTTAAGATTATCAATCATAGCAGTTGGGGATGC
TTCATAGCTCCATTGGTTGCATATCCAACGGACTGATTTTCTCTGGACAC
ATTCTAGTTGATATGTTAACGACTGATTACCAACTGGATCCCATACTGTG
GAGGCATACTCAACGATTGGACGAATAAAGGTTTT

Coding sequence (CDS) from alignment at sc0000088:419699..420033

>TCONS_00008934 ID=TCONS_00008934|Name=TCONS_00008934|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000088:419699..420033 (Clytia hemisphaerica)
GAATGAATATGTGTAACGTAGTATGGCGCCTTGTATAGGTTGAAAACGTA
AGTTAGTGCATCGTTGTTGGTTGATGGTTTGACTTGGCATGAACTTAAGA
CCATGGTGGAATCGGTACAGCGTTGATAACCGGTTAATTCGTCGTCTCTT
ATCCAATGTTTGAAGCTTAAGATTATCAATCATAGCAGTTGGGGATGCTT
CATAGCTCCATTGGTTGCATATCCAACGGACTGATTTTCTCTGGACACAT
TCTAGTTGATATGTTAACGACTGATTACCAACTGGATCCCATACTGTGGA
GGCATACTCAACGATTGGACGAATAAAGGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005013XLOC_005013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008934-exon-sc0000088-1491911889:419699..420033TCONS_00008934-exon-sc0000088-1491911889:419699..420033Clytia hemisphaericaexon
TCONS_00008934-exon-sc0000088-1510915933:419699..420033TCONS_00008934-exon-sc0000088-1510915933:419699..420033Clytia hemisphaericaexon
TCONS_00008934-exon-sc0000088-1575043694:419699..420033TCONS_00008934-exon-sc0000088-1575043694:419699..420033Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008934-proteinTCONS_00008934-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:419699..420033 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32505	1.09828	0.956407	1.87139	1.89853	0.300049	0.868376	1.35559	0.711809	1.17559	0.85579	0.750083	1.8726	2.69327	0.79941	0.343156	1.47959	0.649942	0	1.56603	1.27231	1.19507	0.322837	0.293506	0	0.406891	1.15825	0	0.625031	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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