|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008935 ID=TCONS_00008935|Name=TCONS_00008935|organism=Clytia hemisphaerica|type=transcript|length=3383bp
TGATCACAATACTCGTTTCAGGGTTTCTTTACTGAAATGTTATTATTGAA
GAGCCAGTTGGAGCTAAAATCTACCAGTTTTACATTTTAATCATAAAATA
TTAtgaggaaaaagaaaatgagaaaaatgtcTTCAATATACGAATCATTA
AGGGAAAAGTCATGAAAAATTCAtaagaaataaaagaaaaagcacATTTT
AGAAAACCTACAGGAATAAGAAatatacttgaaaaaaaaatgacaaattt
aaCTTTTAGGGTTCATTGTACCTTTCATATATACGTAAGCTAAGACTTCA
CTTCAAACGAGGGTCCTCATCTAAACTGAGGAATTTTATATAGTTTTATA
GTGcatagttttcagaaaaaaacacattttttgaaacAGTGTACGTTAAA
TTTTCTTACATAAAGAATCCCGTAAGAGAACGAAGAATTAAACAAGGAAG
TTAAGAAACTCTTTAAATTATTCTTCATTCTTCTCTCATTTTCACCTGCC
CCTTCCATTACAAACAAAGGTACCATAAATTGAAAATCATAATATGATAA
TAACAAAGATTTGAGAATTTTTAATGAAAGAAAAGCAAATCATAGGGGAA
ATCTGTTCCCATAGGGGAAATCTGTTTCCCACATGCGGGGTGGCCACGTT
TCACGAATGACAAGCACGTTTTCACTCCACTAAAACTTCTTAACGTTTGC
CATGTTGAAGTTCATtctatatgaaaataaaataaattgttaaaGAGACA
TATATTCAGTTCGCTACTCAAATGCTTTCCTACTTGATGCCTTGTCTTGA
GCTCTCTGGCATAGAGCAAAATACACAAATAAACACCCTCTTTTCACAGA
cccggcccccccccccaaaaatagaaaattggccaaaatattatcCCCAA
TGAAAAAGTAAGCTTCATTTTTTGTCCCgctgataaaaatgaaataaaca
aatcctcgctgcaaaatatCGTTTCATTTTTTACATCCACAGAGCTGTAA
AAAGCATGCAAATATTAATTCACATCGAATTTCTGTCCGTTATATTTACC
CCAAAAGACTGAAAAAaccctactgggtctgtgagaagtgggTGTATGAC
AGTCGAGCTTGCTTGGCCACATTTACTATTCAATTAGAAAAcgaaataat
aaaataagttTCGTACAACCGATTCTGCCTGCATCTTTTGTTTGATcaga
gcaaaaaatgttttcaaacgggagcaaaataaaatttaagattggaATCA
AACCGTTAGCAAGCAGATAAAAAATAATTCCCCTTGAACAAAAAGTTCTG
TTATCACTTTGTTATCACTGTCAAGCTTTCAGTTTCTAAATTCAAAGCAT
TATCTTACTCACATATAGCTCACAACACAACTATATAATAatgagaaaag
aaatttttttcttacttGCACCGAATTCCTTGAATTCCATCATTTATTAC
TTTTAAATAATACCACGAGAATTTGGTGTGATGAATATACAATGCAAAAA
GCTTTTCTCGTCTATGTTACATAATTTTTAACATTAACTACATGGTATGT
AATCTGGATAATACCTTCAGTGTATCTTTTCATTCTATTGAAAAATGCCA
AACCCCAATGCTTGTGTATCTTTCAAGATACTAAGTATTTGCCCTCCTCC
TAAAACTCAAATTCAACACGATGCTTTTTCAAAAGAAGGGAGTTTGAACT
ACTGGGTGCAGAATGTTTATGATTGACTATTTCGTACTCCAATGGAAATT
GTCAATcactaaaaaaattcatttccccTAAGATAGAATATATTATCCTC
CATCCCCAAGCACACATGAGTAGTTCAAAGCAAGATATAATCATATAATA
AGTATCACattttctcaatatattttacGAAAAAATGATATGAGAATTCA
AAACATagtattaaaaaaaatcttcttggggttaaaaatttctttcagcC
AAAAAGTGATAACAATTGATGATAATTCAGTATATAAGCACCAAAACATT
GAACTAGTTTCTTCTCTTTATAAAACCAACTTTTTTTGTCAAAGTTCTCC
CTATGTGCATAATATCTTGGTAAAACAAGGTAAAAacgaatcaaaaaaat
ttcatctctgaTTCAAAAAAGGAGCCTTTTGATGTATATAAATGAAATTT
CTGGTTTCAATAAATTGGACTGAATACATGTTTTATAtttagaatttaat
ttaatgaatatttaatttcttttcataACTCATTCAATGAAAAGTCCAAA
ATCAATCCTTTAGAAGGAGACTCTACCATAAACAAAGCCAACACCTATTT
TTCAGATttgtcattaattttttaatttgaaaacctCTATAATATCACAT
GTTAAAAACAACGTTAGTTTTAGTAAAGATGTATAAGAAATAAATTGCAA
ATTATGAGTTAGAattaggaaatcctaccaaccTTATGCAACATGATTAG
ACTAGAGCTGAAGTTTTCTCTAAAACAGTATGATATGCCTTATGAAGTAA
CAAGCAAACACTTTATTTCCACTACTATTACACCTTACTTATTTATATAA
AATGTCATGTACTTTTTTAAACCTGTTCTTCAATTCTGGATTTTTTTGAC
ATGTTCACCTTCGAGTGtgatcatgctttattagagtCTACAAAAACTTA
TACCGTAATAAAAAtcctttaaaaatgacaatttattgaaaaattgccca
tgaatttgttttcactttctttAAAATTAGTCTGAAAAAAGTAACTTTCA
TGGAACATCATTAACAGGATTCtggcaaaaaaaatgaaactttgtcAGCG
GAGCATAGCTATCATGAAAAGCATGAAAATTCAACCCTAAATGATAAAAT
ATAAGCAGATGCAGTCTTACTCGACTTCAGCAAAGCTTTTGATAAAGTGT
GTCATCGAAAGTTGTTGCTGAAGTTGAGATTCTATGGTATTAGAAATAAA
CTTGATTGGATTGAGGACTTTTTAAGGGACATAtcacaaaaagttcttgt
tAAAGGGTCTGAATCGCCTGAAGGGAGTGTTACTTCAGGAGTACCACAGG
GTTCAGTTTTGGATCcattattgtttttttgtttgtatcAATGATATTTC
TGCAGCAACCACCTCATCTGAAATAAGCTTATTCGTAGACGATGCCTTGC
TCTACAAAAATGTCAAATCTACACAAGACAAACGTGATCTTCAAAAAGAC
CTAGACTGACTTATTCAGTGGGAGCAAGACTGGTCAATGCAGTTCAATGC
GGACAAGTGTAAAGTTATACGAATTACAAATAAACGAAAAATAACTGAAG
GTACCTACTCAATCCATGGGTACAATCTTGAGCTTGTTAAAACTGCAAAA
TACTTAGGTGTAACTCTTGACAATAAACTGCCG Run BLAST on NCBI transcript from alignment at sc0000088:420471..423853 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008935 ID=TCONS_00008935|Name=TCONS_00008935|organism=Clytia hemisphaerica|type=transcript|length=3383bp|location=Sequence derived from alignment at sc0000088:420471..423853 (Clytia hemisphaerica)
CGGCAGTTTATTGTCAAGAGTTACACCTAAGTATTTTGCAGTTTTAACAA
GCTCAAGATTGTACCCATGGATTGAGTAGGTACCTTCAGTTATTTTTCGT
TTATTTGTAATTCGTATAACTTTACACTTGTCCGCATTGAACTGCATTGA
CCAGTCTTGCTCCCACTGAATAAGTCAGTCTAGGTCTTTTTGAAGATCAC
GTTTGTCTTGTGTAGATTTGACATTTTTGTAGAGCAAGGCATCGTCTACG
AATAAGCTTATTTCAGATGAGGTGGTTGCTGCAGAAATATCATTgataca
aacaaaaaaacaataatgGATCCAAAACTGAACCCTGTGGTACTCCTGAA
GTAACACTCCCTTCAGGCGATTCAGACCCTTTaacaagaactttttgtga
TATGTCCCTTAAAAAGTCCTCAATCCAATCAAGTTTATTTCTAATACCAT
AGAATCTCAACTTCAGCAACAACTTTCGATGACACACTTTATCAAAAGCT
TTGCTGAAGTCGAGTAAGACTGCATCTGCTTATATTTTATCATTTAGGGT
TGAATTTTCATGCTTTTCATGATAGCTATGCTCCGCTgacaaagtttcat
tttttttgccaGAATCCTGTTAATGATGTTCCATGAAAGTTACTTTTTTC
AGACTAATTTTaaagaaagtgaaaacaaattcatgggcaatttttcaata
aattgtcatttttaaaggaTTTTTATTACGGTATAAGTTTTTGTAGactc
taataaagcatgatcaCACTCGAAGGTGAACATGTCAAAAAAATCCAGAA
TTGAAGAACAGGTTTAAAAAAGTACATGACATTTTATATAAATAAGTAAG
GTGTAATAGTAGTGGAAATAAAGTGTTTGCTTGTTACTTCATAAGGCATA
TCATACTGTTTTAGAGAAAACTTCAGCTCTAGTCTAATCATGTTGCATAA
ggttggtaggatttcctaatTCTAACTCATAATTTGCAATTTATTTCTTA
TACATCTTTACTAAAACTAACGTTGTTTTTAACATGTGATATTATAGagg
ttttcaaattaaaaaattaatgacaaATCTGAAAAATAGGTGTTGGCTTT
GTTTATGGTAGAGTCTCCTTCTAAAGGATTGATTTTGGACTTTTCATTGA
ATGAGTtatgaaaagaaattaaatattcattaaattaaattctaaaTATA
AAACATGTATTCAGTCCAATTTATTGAAACCAGAAATTTCATTTATATAC
ATCAAAAGGCTCCTTTTTTGAAtcagagatgaaatttttttgattcgtTT
TTACCTTGTTTTACCAAGATATTATGCACATAGGGAGAACTTTGACAAAA
AAAGTTGGTTTTATAAAGAGAAGAAACTAGTTCAATGTTTTGGTGCTTAT
ATACTGAATTATCATCAATTGTTATCACTTTTTGgctgaaagaaattttt
aaccccaagaagattttttttaatactATGTTTTGAATTCTCATATCATT
TTTTCgtaaaatatattgagaaaatGTGATACTTATTATATGATTATATC
TTGCTTTGAACTACTCATGTGTGCTTGGGGATGGAGGATAATATATTCTA
TCTTAggggaaatgaatttttttagtgATTGACAATTTCCATTGGAGTAC
GAAATAGTCAATCATAAACATTCTGCACCCAGTAGTTCAAACTCCCTTCT
TTTGAAAAAGCATCGTGTTGAATTTGAGTTTTAGGAGGAGGGCAAATACT
TAGTATCTTGAAAGATACACAAGCATTGGGGTTTGGCATTTTTCAATAGA
ATGAAAAGATACACTGAAGGTATTATCCAGATTACATACCATGTAGTTAA
TGTTAAAAATTATGTAACATAGACGAGAAAAGCTTTTTGCATTGTATATT
CATCACACCAAATTCTCGTGGTATTATTTAAAAGTAATAAATGATGGAAT
TCAAGGAATTCGGTGCaagtaagaaaaaaatttcttttctcatTATTATA
TAGTTGTGTTGTGAGCTATATGTGAGTAAGATAATGCTTTGAATTTAGAA
ACTGAAAGCTTGACAGTGATAACAAAGTGATAACAGAACTTTTTGTTCAA
GGGGAATTATTTTTTATCTGCTTGCTAACGGTTTGATtccaatcttaaat
tttattttgctcccgtttgaaaacattttttgctctgATCAAACAAAAGA
TGCAGGCAGAATCGGTTGTACGAaacttattttattatttcgTTTTCTAA
TTGAATAGTAAATGTGGCCAAGCAAGCTCGACTGTCATACAcccacttct
cacagacccagtagggtTTTTTCAGTCTTTTGGGGTAAATATAACGGACA
GAAATTCGATGTGAATTAATATTTGCATGCTTTTTACAGCTCTGTGGATG
TAAAAAATGAAACGatattttgcagcgaggatttgtttatttcattttta
tcagcGGGACAAAAAATGAAGCTTACTTTTTCATTGGGgataatattttg
gccaattttctatttttgggggggggggccgggTCTGTGAAAAGAGGGTG
TTTATTTGTGTATTTTGCTCTATGCCAGAGAGCTCAAGACAAGGCATCAA
GTAGGAAAGCATTTGAGTAGCGAACTGAATATATGTCTCtttaacaattt
attttattttcatatagaATGAACTTCAACATGGCAAACGTTAAGAAGTT
TTAGTGGAGTGAAAACGTGCTTGTCATTCGTGAAACGTGGCCACCCCGCA
TGTGGGAAACAGATTTCCCCTATGGGAACAGATTTCCCCTATGATTTGCT
TTTCTTTCATTAAAAATTCTCAAATCTTTGTTATTATCATATTATGATTT
TCAATTTATGGTACCTTTGTTTGTAATGGAAGGGGCAGGTGAAAATGAGA
GAAGAATGAAGAATAATTTAAAGAGTTTCTTAACTTCCTTGTTTAATTCT
TCGTTCTCTTACGGGATTCTTTATGTAAGAAAATTTAACGTACACTgttt
caaaaaatgtgtttttttctgaaaactatgCACTATAAAACTATATAAAA
TTCCTCAGTTTAGATGAGGACCCTCGTTTGAAGTGAAGTCTTAGCTTACG
TATATATGAAAGGTACAATGAACCCTAAAAGttaaatttgtcattttttt
ttcaagtatatTTCTTATTCCTGTAGGTTTTCTAAAATgtgctttttctt
ttatttcttaTGAATTTTTCATGACTTTTCCCTTAATGATTCGTATATTG
AAgacatttttctcattttctttttcctcaTAATATTTTATGATTAAAAT
GTAAAACTGGTAGATTTTAGCTCCAACTGGCTCTTCAATAATAACATTTC
AGTAAAGAAACCCTGAAACGAGTATTGTGATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008935-exon-sc0000088-1491911889:420471..423853 | TCONS_00008935-exon-sc0000088-1491911889:420471..423853 | Clytia hemisphaerica | exon |
| TCONS_00008935-exon-sc0000088-1510915933:420471..423853 | TCONS_00008935-exon-sc0000088-1510915933:420471..423853 | Clytia hemisphaerica | exon |
| TCONS_00008935-exon-sc0000088-1575043694:420471..423853 | TCONS_00008935-exon-sc0000088-1575043694:420471..423853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:420471..423853 . |
Blast
The following BLAST results are available for this feature:
|
