TCONS_00008937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008937
Unique NameTCONS_00008937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008937 ID=TCONS_00008937|Name=TCONS_00008937|organism=Clytia hemisphaerica|type=transcript|length=511bp
ATAATTATCACAATAAGATCAAATTTACGATCGAGATATCGCCAAATAAG
TTTCTTGACACTCAAATTCAGTATACTAACACCACGATAGAAACGTCTGT
GCATAGAGGGCAAAACAAAGTTCCTGTTCATTGGAGTTCCAAAGTGCCTA
AGAAGTACAAACGTAATACAATNGCAACTGTGCATAGAGGGCAAAACAAA
GTTCCTGTTCATTGGAGTTCCAAAGTGCCTAAGAAGTACAAACGTAATAC
AATAAATGCAGATTTGTACAGAGCGCAAAGAATCTCCTCAAATTTCGACA
GCGAAAAAGTGATAATTGCTGACAAGTTTCATTCAGCGGGTTTTCCTAAA
CGATTTGTATCTAGTGTTATTAGACaattcaatgaaaatcaaaacGACGA
GATGATAATCCCTAAAAACCTATTTGAGGAACCAAAACCATATGTGCGTA
TTGAGCTACCTTATTGTCCGAAGAATGAAGGAATTTCTAAATCGTTCATG
TCCAAATTTCN
Run BLAST on NCBI

protein sequence of TCONS_00008937-protein

>TCONS_00008937-protein ID=TCONS_00008937-protein|Name=TCONS_00008937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
NYHNKIKFTIEISPNKFLDTQIQYTNTTIETSVHRGQNKVPVHWSSKVPK
KYKRNTXATVHRGQNKVPVHWSSKVPKKYKRNTINADLYRAQRISSNFDS
EKVIIADKFHSAGFPKRFVSSVIRQFNENQNDEMIIPKNLFEEPKPYVRI
ELPYCPKNEGISKSFMSKF
Run BLAST on NCBI

transcript from alignment at sc0000088:446552..447062

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008937 ID=TCONS_00008937|Name=TCONS_00008937|organism=Clytia hemisphaerica|type=transcript|length=511bp|location=Sequence derived from alignment at sc0000088:446552..447062 (Clytia hemisphaerica)
NGAAATTTGGACATGAACGATTTAGAAATTCCTTCATTCTTCGGACAATA
AGGTAGCTCAATACGCACATATGGTTTTGGTTCCTCAAATAGGTTTTTAG
GGATTATCATCTCGTCgttttgattttcattgaattGTCTAATAACACTA
GATACAAATCGTTTAGGAAAACCCGCTGAATGAAACTTGTCAGCAATTAT
CACTTTTTCGCTGTCGAAATTTGAGGAGATTCTTTGCGCTCTGTACAAAT
CTGCATTTATTGTATTACGTTTGTACTTCTTAGGCACTTTGGAACTCCAA
TGAACAGGAACTTTGTTTTGCCCTCTATGCACAGTTGCNATTGTATTACG
TTTGTACTTCTTAGGCACTTTGGAACTCCAATGAACAGGAACTTTGTTTT
GCCCTCTATGCACAGACGTTTCTATCGTGGTGTTAGTATACTGAATTTGA
GTGTCAAGAAACTTATTTGGCGATATCTCGATCGTAAATTTGATCTTATT
GTGATAATTAT

Coding sequence (CDS) from alignment at sc0000088:446552..447062

>TCONS_00008937 ID=TCONS_00008937|Name=TCONS_00008937|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000088:446552..447062 (Clytia hemisphaerica)
AAATTTGGACATGAACGATTTAGAAATTCCTTCATTCTTCGGACAATAAG
GTAGCTCAATACGCACATATGGTTTTGGTTCCTCAAATAGGTTTTTAGGG
ATTATCATCTCGTCgttttgattttcattgaattGTCTAATAACACTAGA
TACAAATCGTTTAGGAAAACCCGCTGAATGAAACTTGTCAGCAATTATCA
CTTTTTCGCTGTCGAAATTTGAGGAGATTCTTTGCGCTCTGTACAAATCT
GCATTTATTGTATTACGTTTGTACTTCTTAGGCACTTTGGAACTCCAATG
AACAGGAACTTTGTTTTGCCCTCTATGCACAGTTGCNATTGTATTACGTT
TGTACTTCTTAGGCACTTTGGAACTCCAATGAACAGGAACTTTGTTTTGC
CCTCTATGCACAGACGTTTCTATCGTGGTGTTAGTATACTGAATTTGAGT
GTCAAGAAACTTATTTGGCGATATCTCGATCGTAAATTTGATCTTATTGT
GATAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005016XLOC_005016Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008937-proteinTCONS_00008937-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008937-exon-sc0000088-1491911889:446552..447062TCONS_00008937-exon-sc0000088-1491911889:446552..447062Clytia hemisphaericaexon
TCONS_00008937-exon-sc0000088-1510915933:446552..447062TCONS_00008937-exon-sc0000088-1510915933:446552..447062Clytia hemisphaericaexon
TCONS_00008937-exon-sc0000088-1575043694:446552..447062TCONS_00008937-exon-sc0000088-1575043694:446552..447062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:446552..447062 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.352428	0.343673	0.665062	0.910922	0.633692	0.62594	0.302068	0	0.0989947	0.122621	0	0	0.0781296	0	0	0.21476	0	0	0	0	0.340747	0.332409	0	0	0.126129	0.450268	0.322166	0.171912	0.391167	0.265692
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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