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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008943 ID=TCONS_00008943|Name=TCONS_00008943|organism=Clytia hemisphaerica|type=transcript|length=711bp
GCTCGACAACAGTGTATGTTTCACCGAAAGCGAGAGATGAAGAAAATTGC
GGCTTGAAgcacaaaaaatgtcaaacaatTGATCATGTATTGAAAGAATT
TAACAATAGCAATTTGAAGTTGGTTTTAGAGAACTTTCAGACTCAAAGCA
TTGTTTATCACACTCAAGGAATGTTACGTCCTGACAGTGATTATTTTCAG
TTACGAATTACAAAAGAAAGTCAAAATGGAACGAACCCGACTATATATGG
AAATGGATTACCCTTCATTCAACCCAAAGGTGCTTTCAGTCTATCTATTG
ATCAGGTCGACCTACAGAGTCTCGCAATTCTTAACTCTATGAATCAAAAC
GCAAACATGGCCATATCGTTCCGAAACTTGAATATTAGAACAGAGATAAT
AGGAGATTTCATATCCACCACCAACACAAACAGCAATCTTAACGTCACCA
TACAATCTTGTGTTTTGATATCACCGACCAAGAATGCGTGGTTGAATATA
TCAATGAAAAAAGCGACTTCGTTTAAATCAATCATCAAATTAACCAACAA
CACCATTCGAGGAGGGCGTTTTGTCATAATAAACGTTCATGTACTCGATT
TTTCACAAACAAAAATACATAATATGGTCACTGATATCTTAAATGAGAAT
ACTTCTCAATTCTCGTCTTTCATAATATActtaaaacatatcaaaaacgC
AGTTTTCCGTG Run BLAST on NCBI protein sequence of TCONS_00008943-protein >TCONS_00008943-protein ID=TCONS_00008943-protein|Name=TCONS_00008943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
STTVYVSPKARDEENCGLKHKKCQTIDHVLKEFNNSNLKLVLENFQTQSI
VYHTQGMLRPDSDYFQLRITKESQNGTNPTIYGNGLPFIQPKGAFSLSID
QVDLQSLAILNSMNQNANMAISFRNLNIRTEIIGDFISTTNTNSNLNVTI
QSCVLISPTKNAWLNISMKKATSFKSIIKLTNNTIRGGRFVIINVHVLDF
SQTKIHNMVTDILNENTSQFSSFIIYLKHIKNAVFR Run BLAST on NCBI transcript from alignment at sc0000088:648464..649174 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008943 ID=TCONS_00008943|Name=TCONS_00008943|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at sc0000088:648464..649174 (Clytia hemisphaerica)
CACGGAAAACTGcgtttttgatatgttttaagTATATTATGAAAGACGAG
AATTGAGAAGTATTCTCATTTAAGATATCAGTGACCATATTATGTATTTT
TGTTTGTGAAAAATCGAGTACATGAACGTTTATTATGACAAAACGCCCTC
CTCGAATGGTGTTGTTGGTTAATTTGATGATTGATTTAAACGAAGTCGCT
TTTTTCATTGATATATTCAACCACGCATTCTTGGTCGGTGATATCAAAAC
ACAAGATTGTATGGTGACGTTAAGATTGCTGTTTGTGTTGGTGGTGGATA
TGAAATCTCCTATTATCTCTGTTCTAATATTCAAGTTTCGGAACGATATG
GCCATGTTTGCGTTTTGATTCATAGAGTTAAGAATTGCGAGACTCTGTAG
GTCGACCTGATCAATAGATAGACTGAAAGCACCTTTGGGTTGAATGAAGG
GTAATCCATTTCCATATATAGTCGGGTTCGTTCCATTTTGACTTTCTTTT
GTAATTCGTAACTGAAAATAATCACTGTCAGGACGTAACATTCCTTGAGT
GTGATAAACAATGCTTTGAGTCTGAAAGTTCTCTAAAACCAACTTCAAAT
TGCTATTGTTAAATTCTTTCAATACATGATCAattgtttgacattttttg
tgcTTCAAGCCGCAATTTTCTTCATCTCTCGCTTTCGGTGAAACATACAC
TGTTGTCGAGC Coding sequence (CDS) from alignment at sc0000088:648464..649174 >TCONS_00008943 ID=TCONS_00008943|Name=TCONS_00008943|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000088:648464..649174 (Clytia hemisphaerica)
ACGGAAAACTGcgtttttgatatgttttaagTATATTATGAAAGACGAGA
ATTGAGAAGTATTCTCATTTAAGATATCAGTGACCATATTATGTATTTTT
GTTTGTGAAAAATCGAGTACATGAACGTTTATTATGACAAAACGCCCTCC
TCGAATGGTGTTGTTGGTTAATTTGATGATTGATTTAAACGAAGTCGCTT
TTTTCATTGATATATTCAACCACGCATTCTTGGTCGGTGATATCAAAACA
CAAGATTGTATGGTGACGTTAAGATTGCTGTTTGTGTTGGTGGTGGATAT
GAAATCTCCTATTATCTCTGTTCTAATATTCAAGTTTCGGAACGATATGG
CCATGTTTGCGTTTTGATTCATAGAGTTAAGAATTGCGAGACTCTGTAGG
TCGACCTGATCAATAGATAGACTGAAAGCACCTTTGGGTTGAATGAAGGG
TAATCCATTTCCATATATAGTCGGGTTCGTTCCATTTTGACTTTCTTTTG
TAATTCGTAACTGAAAATAATCACTGTCAGGACGTAACATTCCTTGAGTG
TGATAAACAATGCTTTGAGTCTGAAAGTTCTCTAAAACCAACTTCAAATT
GCTATTGTTAAATTCTTTCAATACATGATCAattgtttgacattttttgt
gcTTCAAGCCGCAATTTTCTTCATCTCTCGCTTTCGGTGAAACATACACT
GTTGTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008943-exon-sc0000088-1491911889:648464..649174 | TCONS_00008943-exon-sc0000088-1491911889:648464..649174 | Clytia hemisphaerica | exon |
| TCONS_00008943-exon-sc0000088-1510915933:648464..649174 | TCONS_00008943-exon-sc0000088-1510915933:648464..649174 | Clytia hemisphaerica | exon |
| TCONS_00008943-exon-sc0000088-1575043694:648464..649174 | TCONS_00008943-exon-sc0000088-1575043694:648464..649174 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:648464..649174 . |
Blast
The following BLAST results are available for this feature:
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