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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008950 ID=TCONS_00008950|Name=TCONS_00008950|organism=Clytia hemisphaerica|type=transcript|length=2488bp
AAACAAGGCTGGCACCAGATATTTAGATTTGTTTCTCAAGCAGATGTCAC
GCGCTAAACGATTCGAGAGAAAGCCCGAGTTTAGTGACATCATGGGAAAA
CTGATCTCACGATTGAGTCGGATCAATGGTGGTCTccttacaaaaaaaca
taactCGGGCAATAAACTCACAATCATATTGAACACTGTCAATGAGATTT
CAAACATTGAGACTTTATTAAACGACATTGAAACACTACCTTCTTGGAGT
AAATCTGCCAATATTCTTATTGGTTTGAACGAAACCAGTTACAACAAACA
TTCAAAAAGATTGACCAAAATTCAAAGTGCAATGCCGAATTTGGAATGGG
TTCTTGTAAAAGCTAATTCCATGACAGTTTCTTTCGATAAATCTACTTTT
AACAGGATCTACAATCGAAAAAACAATACATTAGcacaaaatttattgtt
tcttgCTTCAAAAAGTTCTACCAAATATGTTATGTTAACCCGACGATTAA
GGAAAATTCACCACGAGTTTAACATCAAGGACTTTGTAGATCCTTTAATG
AAAGGATCCAGTGATGTTATTTCCGGATCGGTGTTATATCCAGAGGGCCG
GTGGAGTTCTGGATGTTACCAATCTAAATTGATTTGGAGTCAATACAAAG
TTGAATTCGGTTTCGATGTTATGTATCAACAACAAAAAGTTCTATGTGAT
TATTTTGATGGACCATTTGCGATGAACAGAGAGGTTCTTTTGGGTTATTT
GGAAGCTAGAAAAGATTGTCCAGATAAGTTAGTTTATCCAGATATCATAT
ACACCATGGCTAGGCAAATGAAAATTATGAAGTCGCACCTGTCTAGCTTA
TTCTATATGGAGAAATGGCGTGATTTTGAAGATCTAACTCGAAATAACTG
GCTTgattttgcaataaaaaatgacatttctgAATTTCATAGAGGGACTT
ATACCAAACGAATTGAATTTACTTACATTGAATCTAAGGTAAAATGCGAA
AAACAAATGGCGAAAACTAAAACTATGTTTGAGCAAAGAGCTTGCATGAG
AGATCTCCATAAAATGATGATTAATACATCTAAACTCTTTGACAAGCTAG
GTTATCAATACAGCATCTATGCTGGATCAGGCCTAGGAGCATTAAAACTT
CAAGACTCACTACCATGGGATATAGACGAAGATTTCCTCTTCCGAAGTCA
AAATTTCACGTCGCTAGTAAAACACGAATTGGAGTGGAAAAAACTTGGAA
TGTCATTCTCTAAACACCAATATGAAGCATGCCCAAGAACTATAAGTGAT
ACTAACAGATTCTCTTGTGGATACATTGGAATATATAAAGGTAAATGGAA
CATTGAGGTTTGGGGGTTTTACATTTTTCCATCAGACATGTATAAGAATC
CACGAGGCATTTTCAAAACAAtgcaaaaggttaagaaaaagtCATTTCCG
ACTAGTCGAATCAAGGGTGGAGTCAATACTAAACTCTATATCGGAGGGCA
CTGGCAACCTAATAGACCGAATCCAGGGCTATATGCACGTAGCCGGTATG
GCCTTGATGTTTTAAAACACGTTCAACATTGGCGACAACAGGGGTTGAAG
ACGAGTTGGTTGTTATACCACACTAGGCCGAAATTCGAAGCATGTACAAA
AGAAGGACACCATTTATGTATGGATCAGTATTTGGCAGATGGGAACATCC
AATTTCAACAACCATGGGCATGAAAGTTATTGATtgtctatttatttttt
ttatccttttttcttTGGGGGTCCCGAAGTCTTCATTTCGATACTGGAGT
TGTATTTTAGAATTTGACAGAAATATATCGTTCTTTATGACTCACAAGGT
GATCtttctgtagaaaaaatcagGATTATTTCGGCTATCTTTGTTGTTCT
CTCTGAAACTAGTGTTCATatggagatgaaattttgcatttttaccCCGC
GTAGTAAATTTGCTTTGCTtctataaagaaaaatcaagtggAAATTTGTT
CTAGAAGCAAAGCGGAAACTTCCAGTGGGGATAAGTCTACCTGATGGTGC
TCACGGTTGTATCAACGTCttgattcatgatattcatgacgtaatgtttt
ctacggaaagacccttgtttttgccagtagtggcaaattttatacaactt
ttgtctagtttaaaagtgccactactggctaaaaccgggatatttccgta
gaaaacattacgtcatgaatatcatgaatattggATATTTCTTTCGTGTA
TTACGCATTGTGAAACTCGCGGTTAGTAAGATTCCATCGGTCACTAGGGA
TTGATTCATCCTGTCAGAAAACATAGTGTCGCGTTTCAATGGAATTCTGA
AAATCCACCACCAAATTAACCCTTCGATTCGTACAGACACCCGATATTAC
ATAATCTCAAGAAGCCATTTATTCCCTTCCCCATATCCCAATTTCGCATG
ATTGAAGTCAATATCAAAGTATATTTGCTCCTCAGAAG Run BLAST on NCBI protein sequence of TCONS_00008950-protein >TCONS_00008950-protein ID=TCONS_00008950-protein|Name=TCONS_00008950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp
NKAGTRYLDLFLKQMSRAKRFERKPEFSDIMGKLISRLSRINGGLLTKKH
NSGNKLTIILNTVNEISNIETLLNDIETLPSWSKSANILIGLNETSYNKH
SKRLTKIQSAMPNLEWVLVKANSMTVSFDKSTFNRIYNRKNNTLAQNLLF
LASKSSTKYVMLTRRLRKIHHEFNIKDFVDPLMKGSSDVISGSVLYPEGR
WSSGCYQSKLIWSQYKVEFGFDVMYQQQKVLCDYFDGPFAMNREVLLGYL
EARKDCPDKLVYPDIIYTMARQMKIMKSHLSSLFYMEKWRDFEDLTRNNW
LDFAIKNDISEFHRGTYTKRIEFTYIESKVKCEKQMAKTKTMFEQRACMR
DLHKMMINTSKLFDKLGYQYSIYAGSGLGALKLQDSLPWDIDEDFLFRSQ
NFTSLVKHELEWKKLGMSFSKHQYEACPRTISDTNRFSCGYIGIYKGKWN
IEVWGFYIFPSDMYKNPRGIFKTMQKVKKKSFPTSRIKGGVNTKLYIGGH
WQPNRPNPGLYARSRYGLDVLKHVQHWRQQGLKTSWLLYHTRPKFEACTK
EGHHLCMDQYLADGNIQFQQPWA Run BLAST on NCBI transcript from alignment at sc0000089:102873..105459+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008950 ID=TCONS_00008950|Name=TCONS_00008950|organism=Clytia hemisphaerica|type=transcript|length=2587bp|location=Sequence derived from alignment at sc0000089:102873..105459+ (Clytia hemisphaerica)
AAACAAGGCTGGCACCAGATATTTAGATTTGTTTCTCAAGCAGATGTCAC
GCGCTAAACGATTCGAGAGAAAGCCCGAGTTTAGTGACATCATGGGAAAA
CTGATCTCACGATTGAGTCGGATCAATGGTGGTCTccttacaaaaaaaca
taactCGGGCAATAAACTCACAATCATATTGAACACTGTCAATGAGATTT
CAAACATTGAGACTTTATTAAACGACATTGAAACACTACCTTCTTGGAGT
AAATCTGCCAATATTCTTATTGGTTTGAACGAAACCAGTTACAACAAACA
TTCAAAAAGATTGACCAAAATTCAAAGTGCAATGCCGAATTTGGAATGGG
TTCTTGTAAAAGCTAATTCCATGACAGTTTCTTTCGATAAATCTACTTTT
AACAGGATCTACAATCGAAAAAACAATACATTAGcacaaaatttattgtt
tcttgCTTCAAAAAGTTCTACCAAATATGTTATGTTAACCCGACGATTAA
GGAAAATTCACCACGAGTTTAACATCAAGGACTTTGTAGATCCTTTAATG
AAAGGATCCAGTGATGTTATTTCCGGATCGGTGTTATATCCAGAGGGCCG
GTGGAGTTCTGGATGTTACCAATCTAAATTGATTTGGAGTCAATACAAAG
TTGAATTCGGTTTCGATGTTATGTATCAACAACAAAAAGTTCTATGTGAT
TATTTTGATGGACCATTTGCGATGAACAGAGAGGTTCTTTTGGGTTATTT
GGAAGCTAGAAAAGATTGTCCAGATAAGTTAGTTTATCCAGATATCATAT
ACACCATGGCTAGGCAAATGAAAATTATGAAGTCGCACCTGTCTAGCTTA
TTCTATATGGAGAAATGGCGTGATTTTGAAGATCTAACTCGAAATAACTG
GCTTgattttgcaataaaaaatgacatttctgAATTTCATAGAGGGACTT
ATACCAAACGAATTGAATTTACTTACATTGAATCTAAGGTAAAATGCGAA
AAACAAATGGCGAAAACTAAAACTATGTTTGAGCAAAGAGCTTGCATGAG
AGATCTCCATAAAATGATGATTAATACATCTAAACTCTTTGACAAGCTAG
GTTATCAATACAGCATCTATGCTGGATCAGGCCTAGGAGCATTAAAACTT
CAAGACTCACTACCATGGGATATAGACGAAGATTTCCTCTTCCGAAGTCA
AAATTTCACGTCGCTAGTAAAACACGAATTGGAGTGGAAAAAACTTGGAA
TGTCATTCTCTAAACACCAATATGAAGCATGCCCAAGAACTATAAGTGAT
ACTAACAGATTCTCTTGTGGATACATTGGAATATATAAAGGTAAATGGAA
CATTGAGGTTTGGGGGTTTTACATTTTTCCATCAGACATGTATAAGAATC
CACGAGGCATTTTCAAAACAAtgcaaaaggttaagaaaaagtCATTTCCG
ACTAGTCGAATCAAGGGTGGAGTCAATACTAAACTCTATATCGGAGGGCA
CTGGCAACCTAATAGACCGAATCCAGGGCTATATGCACGTAGCCGGTATG
GCCTTGGTGTTTTAAAACATGTTCAACATTGGCGACAACAGGGGTTGAAG
TCGAGTTGGTTGTTATACCACACTAAGCCGAAATTTGANGGCCGGTATGG
CCTTGATGTTTTAAAACACGTTCAACATTGGCGACAACAGGGGTTGAAGA
CGAGTTGGTTGTTATACCACACTAGGCCGAAATTCGAAGCATGTACAAAA
GAAGGACACCATTTATGTATGGATCAGTATTTGGCAGATGGGAACATCCA
ATTTCAACAACCATGGGCATGAAAGTTATTGATtgtctatttattttttt
tatccttttttcttTGGGGGTCCCGAAGTCTTCATTTCGATACTGGAGTT
GTATTTTAGAATTTGACAGAAATATATCGTTCTTTATGACTCACAAGGTG
ATCtttctgtagaaaaaatcagGATTATTTCGGCTATCTTTGTTGTTCTC
TCTGAAACTAGTGTTCATatggagatgaaattttgcatttttaccCCGCG
TAGTAAATTTGCTTTGCTtctataaagaaaaatcaagtggAAATTTGTTC
TAGAAGCAAAGCGGAAACTTCCAGTGGGGATAAGTCTACCTGATGGTGCT
CACGGTTGTATCAACGTCttgattcatgatattcatgacgtaatgttttc
tacggaaagacccttgtttttgccagtagtggcaaattttatacaacttt
tgtctagtttaaaagtgccactactggctaaaaccgggatatttccgtag
aaaacattacgtcatgaatatcatgaatattggATATTTCTTTCGTGTAT
TACGCATTGTGAAACTCGCGGTTAGTAAGATTCCATCGGTCACTAGGGAT
TGATTCATCCTGTCAGAAAACATAGTGTCGCGTTTCAATGGAATTCTGAA
AATCCACCACCAAATTAACCCTTCGATTCGTACAGACACCCGATATTACA
TAATCTCAAGAAGCCATTTATTCCCTTCCCCATATCCCAATTTCGCATGA
TTGAAGTCAATATCAAAGTATATTTGCTCCTCAGAAG Coding sequence (CDS) from alignment at sc0000089:102873..105459+ >TCONS_00008950 ID=TCONS_00008950|Name=TCONS_00008950|organism=Clytia hemisphaerica|type=CDS|length=1722bp|location=Sequence derived from alignment at sc0000089:102873..105459+ (Clytia hemisphaerica)
AACAAGGCTGGCACCAGATATTTAGATTTGTTTCTCAAGCAGATGTCACG
CGCTAAACGATTCGAGAGAAAGCCCGAGTTTAGTGACATCATGGGAAAAC
TGATCTCACGATTGAGTCGGATCAATGGTGGTCTccttacaaaaaaacat
aactCGGGCAATAAACTCACAATCATATTGAACACTGTCAATGAGATTTC
AAACATTGAGACTTTATTAAACGACATTGAAACACTACCTTCTTGGAGTA
AATCTGCCAATATTCTTATTGGTTTGAACGAAACCAGTTACAACAAACAT
TCAAAAAGATTGACCAAAATTCAAAGTGCAATGCCGAATTTGGAATGGGT
TCTTGTAAAAGCTAATTCCATGACAGTTTCTTTCGATAAATCTACTTTTA
ACAGGATCTACAATCGAAAAAACAATACATTAGcacaaaatttattgttt
cttgCTTCAAAAAGTTCTACCAAATATGTTATGTTAACCCGACGATTAAG
GAAAATTCACCACGAGTTTAACATCAAGGACTTTGTAGATCCTTTAATGA
AAGGATCCAGTGATGTTATTTCCGGATCGGTGTTATATCCAGAGGGCCGG
TGGAGTTCTGGATGTTACCAATCTAAATTGATTTGGAGTCAATACAAAGT
TGAATTCGGTTTCGATGTTATGTATCAACAACAAAAAGTTCTATGTGATT
ATTTTGATGGACCATTTGCGATGAACAGAGAGGTTCTTTTGGGTTATTTG
GAAGCTAGAAAAGATTGTCCAGATAAGTTAGTTTATCCAGATATCATATA
CACCATGGCTAGGCAAATGAAAATTATGAAGTCGCACCTGTCTAGCTTAT
TCTATATGGAGAAATGGCGTGATTTTGAAGATCTAACTCGAAATAACTGG
CTTgattttgcaataaaaaatgacatttctgAATTTCATAGAGGGACTTA
TACCAAACGAATTGAATTTACTTACATTGAATCTAAGGTAAAATGCGAAA
AACAAATGGCGAAAACTAAAACTATGTTTGAGCAAAGAGCTTGCATGAGA
GATCTCCATAAAATGATGATTAATACATCTAAACTCTTTGACAAGCTAGG
TTATCAATACAGCATCTATGCTGGATCAGGCCTAGGAGCATTAAAACTTC
AAGACTCACTACCATGGGATATAGACGAAGATTTCCTCTTCCGAAGTCAA
AATTTCACGTCGCTAGTAAAACACGAATTGGAGTGGAAAAAACTTGGAAT
GTCATTCTCTAAACACCAATATGAAGCATGCCCAAGAACTATAAGTGATA
CTAACAGATTCTCTTGTGGATACATTGGAATATATAAAGGTAAATGGAAC
ATTGAGGTTTGGGGGTTTTACATTTTTCCATCAGACATGTATAAGAATCC
ACGAGGCATTTTCAAAACAAtgcaaaaggttaagaaaaagtCATTTCCGA
CTAGTCGAATCAAGGGTGGAGTCAATACTAAACTCTATATCGGAGGGCAC
TGGCAACCTAATAGACCGAATCCAGGGCTATATGCACGTAGCCGGTATGG
CCTTGATGTTTTAAAACACGTTCAACATTGGCGACAACAGGGGTTGAAGA
CGAGTTGGTTGTTATACCACACTAGGCCGAAATTCGAAGCATGTACAAAA
GAAGGACACCATTTATGTATGGATCAGTATTTGGCAGATGGGAACATCCA
ATTTCAACAACCATGGGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008950-exon-sc0000089-1491911889:102873..104413 | TCONS_00008950-exon-sc0000089-1491911889:102873..104413 | Clytia hemisphaerica | exon |
| TCONS_00008950-exon-sc0000089-1510915933:102873..104413 | TCONS_00008950-exon-sc0000089-1510915933:102873..104413 | Clytia hemisphaerica | exon |
| TCONS_00008950-exon-sc0000089-1575043694:102873..104413 | TCONS_00008950-exon-sc0000089-1575043694:102873..104413 | Clytia hemisphaerica | exon |
| TCONS_00008950-exon-sc0000089-1491911889:104513..105459 | TCONS_00008950-exon-sc0000089-1491911889:104513..105459 | Clytia hemisphaerica | exon |
| TCONS_00008950-exon-sc0000089-1510915933:104513..105459 | TCONS_00008950-exon-sc0000089-1510915933:104513..105459 | Clytia hemisphaerica | exon |
| TCONS_00008950-exon-sc0000089-1575043694:104513..105459 | TCONS_00008950-exon-sc0000089-1575043694:104513..105459 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:102873..105459 + |
Blast
The following BLAST results are available for this feature:
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