TCONS_00008951 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008951
Unique NameTCONS_00008951
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008951 ID=TCONS_00008951|Name=TCONS_00008951|organism=Clytia hemisphaerica|type=transcript|length=2488bp
AAACAAGGCTGGCACCAGATATTTAGATTTGTTTCTCAAGCAGATGTCAC
GCGCTAAACGATTCGAGAGAAAGCCCGAGTTTAGTGACATCATGGGAAAA
CTGATCTCACGATTGAGTCGGATCAATGGTGGTCTccttacaaaaaaaca
taactCGGGCAATAAACTCACAATCATATTGAACACTGTCAATGAGATTT
CAAACATTGAGACTTTATTAAACGACATTGAAACACTACCTTCTTGGAGT
AAATCTGCCAATATTCTTATTGGTTTGAACGAAACCAGTTACAACAAACA
TTCAAAAAGATTGACCAAAATTCAAAGTGCAATGCCGAATTTGGAATGGG
TTCTTGTAAAAGCTAATTCCATGACAGTTTCTTTCGATAAATCTACTTTT
AACAGGATCTACAATCGAAAAAACAATACATTAGcacaaaatttattgtt
tcttgCTTCAAAAAGTTCTACCAAATATGTTATGTTAACCCGACGATTAA
GGAAAATTCACCACGAGTTTAACATCAAGGACTTTGTAGATCCTTTAATG
AAAGGATCCAGTGATGTTATTTCCGGATCGGTGTTATATCCAGAGGGCCG
GTGGAGTTCTGGATGTTACCAATCTAAATTGATTTGGAGTCAATACAAAG
TTGAATTCGGTTTCGATGTTATGTATCAACAACAAAAAGTTCTATGTGAT
TATTTTGATGGACCATTTGCGATGAACAGAGAGGTTCTTTTGGGTTATTT
GGAAGCTAGAAAAGATTGTCCAGATAAGTTAGTTTATCCAGATATCATAT
ACACCATGGCTAGGCAAATGAAAATTATGAAGTCGCACCTGTCTAGCTTA
TTCTATATGGAGAAATGGCGTGATTTTGAAGATCTAACTCGAAATAACTG
GCTTgattttgcaataaaaaatgacatttctgAATTTCATAGAGGGACTT
ATACCAAACGAATTGAATTTACTTACATTGAATCTAAGGTAAAATGCGAA
AAACAAATGGCGAAAACTAAAACTATGTTTGAGCAAAGAGCTTGCATGAG
AGATCTCCATAAAATGATGATTAATACATCTAAACTCTTTGACAAGCTAG
GTTATCAATACAGCATCTATGCTGGATCAGGCCTAGGAGCATTAAAACTT
CAAGACTCACTACCATGGGATATAGACGAAGATTTCCTCTTCCGAAGTCA
AAATTTCACGTCGCTAGTAAAACACGAATTGGAGTGGAAAAAACTTGGAA
TGTCATTCTCTAAACACCAATATGAAGCATGCCCAAGAACTATAAGTGAT
ACTAACAGATTCTCTTGTGGATACATTGGAATATATAAAGGTAAATGGAA
CATTGAGGTTTGGGGGTTTTACATTTTTCCATCAGACATGTATAAGAATC
CACGAGGCATTTTCAAAACAAtgcaaaaggttaagaaaaagtCATTTCCG
ACTAGTCGAATCAAGGGTGGAGTCAATACTAAACTCTATATCGGAGGGCA
CTGGCAACCTAATAGACCGAATCCAGGGCTATATGCACGTAGCCGGTATG
GCCTTGGTGTTTTAAAACATGTTCAACATTGGCGACAACAGGGGTTGAAG
TCGAGTTGGTTGTTATACCACACTAAGCCGAAATTCGAAGCATGTACAAA
AGAAGGACACCATTTATGTATGGATCAGTATTTGGCAGATGGGAACATCC
AATTTCAACAACCATGGGCATGAAAGTTATTGATtgtctatttatttttt
ttatccttttttcttTGGGGGTCCCGAAGTCTTCATTTCGATACTGGAGT
TGTATTTTAGAATTTGACAGAAATATATCGTTCTTTATGACTCACAAGGT
GATCtttctgtagaaaaaatcagGATTATTTCGGCTATCTTTGTTGTTCT
CTCTGAAACTAGTGTTCATatggagatgaaattttgcatttttaccCCGC
GTAGTAAATTTGCTTTGCTtctataaagaaaaatcaagtggAAATTTGTT
CTAGAAGCAAAGCGGAAACTTCCAGTGGGGATAAGTCTACCTGATGGTGC
TCACGGTTGTATCAACGTCttgattcatgatattcatgacgtaatgtttt
ctacggaaagacccttgtttttgccagtagtggcaaattttatacaactt
ttgtctagtttaaaagtgccactactggctaaaaccgggatatttccgta
gaaaacattacgtcatgaatatcatgaatattggATATTTCTTTCGTGTA
TTACGCATTGTGAAACTCGCGGTTAGTAAGATTCCATCGGTCACTAGGGA
TTGATTCATCCTGTCAGAAAACATAGTGTCGCGTTTCAATGGAATTCTGA
AAATCCACCACCAAATTAACCCTTCGATTCGTACAGACACCCGATATTAC
ATAATCTCAAGAAGCCATTTATTCCCTTCCCCATATCCCAATTTCGCATG
ATTGAAGTCAATATCAAAGTATATTTGCTCCTCAGAAG
Run BLAST on NCBI

transcript from alignment at sc0000089:102873..105459+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008951 ID=TCONS_00008951|Name=TCONS_00008951|organism=Clytia hemisphaerica|type=transcript|length=2587bp|location=Sequence derived from alignment at sc0000089:102873..105459+ (Clytia hemisphaerica)
AAACAAGGCTGGCACCAGATATTTAGATTTGTTTCTCAAGCAGATGTCAC
GCGCTAAACGATTCGAGAGAAAGCCCGAGTTTAGTGACATCATGGGAAAA
CTGATCTCACGATTGAGTCGGATCAATGGTGGTCTccttacaaaaaaaca
taactCGGGCAATAAACTCACAATCATATTGAACACTGTCAATGAGATTT
CAAACATTGAGACTTTATTAAACGACATTGAAACACTACCTTCTTGGAGT
AAATCTGCCAATATTCTTATTGGTTTGAACGAAACCAGTTACAACAAACA
TTCAAAAAGATTGACCAAAATTCAAAGTGCAATGCCGAATTTGGAATGGG
TTCTTGTAAAAGCTAATTCCATGACAGTTTCTTTCGATAAATCTACTTTT
AACAGGATCTACAATCGAAAAAACAATACATTAGcacaaaatttattgtt
tcttgCTTCAAAAAGTTCTACCAAATATGTTATGTTAACCCGACGATTAA
GGAAAATTCACCACGAGTTTAACATCAAGGACTTTGTAGATCCTTTAATG
AAAGGATCCAGTGATGTTATTTCCGGATCGGTGTTATATCCAGAGGGCCG
GTGGAGTTCTGGATGTTACCAATCTAAATTGATTTGGAGTCAATACAAAG
TTGAATTCGGTTTCGATGTTATGTATCAACAACAAAAAGTTCTATGTGAT
TATTTTGATGGACCATTTGCGATGAACAGAGAGGTTCTTTTGGGTTATTT
GGAAGCTAGAAAAGATTGTCCAGATAAGTTAGTTTATCCAGATATCATAT
ACACCATGGCTAGGCAAATGAAAATTATGAAGTCGCACCTGTCTAGCTTA
TTCTATATGGAGAAATGGCGTGATTTTGAAGATCTAACTCGAAATAACTG
GCTTgattttgcaataaaaaatgacatttctgAATTTCATAGAGGGACTT
ATACCAAACGAATTGAATTTACTTACATTGAATCTAAGGTAAAATGCGAA
AAACAAATGGCGAAAACTAAAACTATGTTTGAGCAAAGAGCTTGCATGAG
AGATCTCCATAAAATGATGATTAATACATCTAAACTCTTTGACAAGCTAG
GTTATCAATACAGCATCTATGCTGGATCAGGCCTAGGAGCATTAAAACTT
CAAGACTCACTACCATGGGATATAGACGAAGATTTCCTCTTCCGAAGTCA
AAATTTCACGTCGCTAGTAAAACACGAATTGGAGTGGAAAAAACTTGGAA
TGTCATTCTCTAAACACCAATATGAAGCATGCCCAAGAACTATAAGTGAT
ACTAACAGATTCTCTTGTGGATACATTGGAATATATAAAGGTAAATGGAA
CATTGAGGTTTGGGGGTTTTACATTTTTCCATCAGACATGTATAAGAATC
CACGAGGCATTTTCAAAACAAtgcaaaaggttaagaaaaagtCATTTCCG
ACTAGTCGAATCAAGGGTGGAGTCAATACTAAACTCTATATCGGAGGGCA
CTGGCAACCTAATAGACCGAATCCAGGGCTATATGCACGTAGCCGGTATG
GCCTTGGTGTTTTAAAACATGTTCAACATTGGCGACAACAGGGGTTGAAG
TCGAGTTGGTTGTTATACCACACTAAGCCGAAATTTGANGGCCGGTATGG
CCTTGATGTTTTAAAACACGTTCAACATTGGCGACAACAGGGGTTGAAGA
CGAGTTGGTTGTTATACCACACTAGGCCGAAATTCGAAGCATGTACAAAA
GAAGGACACCATTTATGTATGGATCAGTATTTGGCAGATGGGAACATCCA
ATTTCAACAACCATGGGCATGAAAGTTATTGATtgtctatttattttttt
tatccttttttcttTGGGGGTCCCGAAGTCTTCATTTCGATACTGGAGTT
GTATTTTAGAATTTGACAGAAATATATCGTTCTTTATGACTCACAAGGTG
ATCtttctgtagaaaaaatcagGATTATTTCGGCTATCTTTGTTGTTCTC
TCTGAAACTAGTGTTCATatggagatgaaattttgcatttttaccCCGCG
TAGTAAATTTGCTTTGCTtctataaagaaaaatcaagtggAAATTTGTTC
TAGAAGCAAAGCGGAAACTTCCAGTGGGGATAAGTCTACCTGATGGTGCT
CACGGTTGTATCAACGTCttgattcatgatattcatgacgtaatgttttc
tacggaaagacccttgtttttgccagtagtggcaaattttatacaacttt
tgtctagtttaaaagtgccactactggctaaaaccgggatatttccgtag
aaaacattacgtcatgaatatcatgaatattggATATTTCTTTCGTGTAT
TACGCATTGTGAAACTCGCGGTTAGTAAGATTCCATCGGTCACTAGGGAT
TGATTCATCCTGTCAGAAAACATAGTGTCGCGTTTCAATGGAATTCTGAA
AATCCACCACCAAATTAACCCTTCGATTCGTACAGACACCCGATATTACA
TAATCTCAAGAAGCCATTTATTCCCTTCCCCATATCCCAATTTCGCATGA
TTGAAGTCAATATCAAAGTATATTTGCTCCTCAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005026XLOC_005026Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008951-exon-sc0000089-1491911889:102873..104498TCONS_00008951-exon-sc0000089-1491911889:102873..104498Clytia hemisphaericaexon
TCONS_00008951-exon-sc0000089-1510915933:102873..104498TCONS_00008951-exon-sc0000089-1510915933:102873..104498Clytia hemisphaericaexon
TCONS_00008951-exon-sc0000089-1575043694:102873..104498TCONS_00008951-exon-sc0000089-1575043694:102873..104498Clytia hemisphaericaexon
TCONS_00008951-exon-sc0000089-1491911889:104598..105459TCONS_00008951-exon-sc0000089-1491911889:104598..105459Clytia hemisphaericaexon
TCONS_00008951-exon-sc0000089-1510915933:104598..105459TCONS_00008951-exon-sc0000089-1510915933:104598..105459Clytia hemisphaericaexon
TCONS_00008951-exon-sc0000089-1575043694:104598..105459TCONS_00008951-exon-sc0000089-1575043694:104598..105459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:102873..105459 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.447707	0.231143	0.395332	0.279842	1.07421	1.26446	0.789475	0.700188	0.292499	0.121565	0.115607	0	0.147691	0	0.312263	0.440374	0.430685	0.38225	0.235105	0.667447	0.308228	0.226695	0.607276	0.234764	0	0	0.0637651	0	0.0816181	0.0747501
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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