TCONS_00008992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008992
Unique NameTCONS_00008992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008992 ID=TCONS_00008992|Name=TCONS_00008992|organism=Clytia hemisphaerica|type=transcript|length=1108bp
aaaacccaaaatgctataatttttcttaagccattaagtttacaattggg
cctacgaatgatttcaaagatactgaagttgagccagtgcggttagcacg
ttcgacagtagttaaatttcctaaaattaggTGGTTttttttagtactca
tgtactaaaatttttcttaaatttcttgaagaccccacctaatttgggat
tttagtatacatggtactaaaatacttttaggctttttttgtaataccac
cacgtcactaaaagtcatgatgtctgaaattttagtaccgaccccccccc
ctttctctTGTTCTTTTAGAGGTAACTAATTCACttgtattttctgagga
aaatcaATCacttgtatttcccaaggaaacaTTAATGTGATTTTTTAAAG
GAGTTATCTCCTTAAATCTACCTACCAGACTTTGACAACCAAAGAGATCT
TTTTGGTAAAAATGATGCATACAAGGGATGATTAACATACATCAACATTG
TAATAGCTGTTCCTCGAAACAACATCCTGTAATCAATTACTTGTTCCACT
TTAAAAGACAACATCACAAGCCAAAGGCTATGGAATTATTGACAAGCTGA
GATATTCATGACAACTCATTCCAGAATAATTCATTATCAGGTCAACATTC
AAAATGTTCAATGTCACCTCCAGTGTTCATATCTTGCATCCTATCAGCAT
GCTATCATCAAGGTACAGTCACAAATCCATTACACCACATACAAGCATAC
CAGATAACATGAAATAACAATTCTGAAGCTGATTATTTCTCATCTAGATC
CAAAATGTCTTGGATTGGGTTCCTTCAATTTCCAAATGAAGTCACACATT
TGATCGAAAATATAATACCCAATTTGAATGAAAAGGCTACAACAGAACAA
TGGAATGAATGTCTTNCATCACAAGCCAAAGGCTATGGAATTATTGACAA
GCTGAGATATTCATGACAACTCATTCCAGAATAATTCATTATCAGGTCAA
CATTCAAAATGTTCAATGTCACCTCCAGTGTTCATATCTTGCATCCTATC
AGCATGCTATCATCAAGGTACAGTCACAAATCCATTACACCACATACAAG
CATACCAG
Run BLAST on NCBI

transcript from alignment at sc0000089:296331..297558+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008992 ID=TCONS_00008992|Name=TCONS_00008992|organism=Clytia hemisphaerica|type=transcript|length=1228bp|location=Sequence derived from alignment at sc0000089:296331..297558+ (Clytia hemisphaerica)
aaaacccaaaatgctataatttttcttaagccattaagtttacaattggg
cctacgaatgatttcaaagatactgaagttgagccagtgcggttagcacg
ttcgacagtagttaaatttcctaaaattaggTGGTTttttttagtactca
tgtactaaaatttttcttaaatttcttgaagaccccacctaatttgggat
tttagtatacatggtactaaaatacttttaggctttttttgtaataccac
cacgtcactaaaagtcatgatgtctgaaattttagtaccgaccccccccc
ctttctctTGTTCTTTTAGAGGTAACTAATTCACttgtattttctgagga
aaatcaATCacttgtatttcccaaggaaacaTTAATGTGATTTTTTAAAG
GAGTTATCTCCTTAAATCTACCTACCAGACTTTGACAACCAAAGAGATCT
TTTTGGTAAAAATGATGCATACAAGGGATGATTAACATACATCAACATTG
TAATAGCTGTTCCTCGAAACAACATCCTGTAATCAATTACTTGTTCCACT
TTAAAAGACAACATCACAACNTTTGGTAAAAATGATGCATACAAGGGATG
ATTGACATACATCAACATTGTAATAACTGTTCCTCAAAACAACATCCTGT
AATCAATTACTTGTTCCACTTTAAATGACAACATCACAAGCCAAAGGCTA
TGGAATTATTGACAAGCTGAGATATTCATGACAACTCATTCCAGAATAAT
TCATTATCAGGTCAACATTCAAAATGTTCAATGTCACCTCCAGTGTTCAT
ATCTTGCATCCTATCAGCATGCTATCATCAAGGTACAGTCACAAATCCAT
TACACCACATACAAGCATACCAGATAACATGAAATAACAATTCTGAAGCT
GATTATTTCTCATCTAGATCCAAAATGTCTTGGATTGGGTTCCTTCAATT
TCCAAATGAAGTCACACATTTGATCGAAAATATAATACCCAATTTGAATG
AAAAGGCTACAACAGAACAATGGAATGAATGTCTTNCATCACAAGCCAAA
GGCTATGGAATTATTGACAAGCTGAGATATTCATGACAACTCATTCCAGA
ATAATTCATTATCAGGTCAACATTCAAAATGTTCAATGTCACCTCCAGTG
TTCATATCTTGCATCCTATCAGCATGCTATCATCAAGGTACAGTCACAAA
TCCATTACACCACATACAAGCATACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005036XLOC_005036Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008992-exon-sc0000089-1491911889:296331..296892TCONS_00008992-exon-sc0000089-1491911889:296331..296892Clytia hemisphaericaexon
TCONS_00008992-exon-sc0000089-1510915933:296331..296892TCONS_00008992-exon-sc0000089-1510915933:296331..296892Clytia hemisphaericaexon
TCONS_00008992-exon-sc0000089-1575043694:296331..296892TCONS_00008992-exon-sc0000089-1575043694:296331..296892Clytia hemisphaericaexon
TCONS_00008992-exon-sc0000089-1491911889:297013..297558TCONS_00008992-exon-sc0000089-1491911889:297013..297558Clytia hemisphaericaexon
TCONS_00008992-exon-sc0000089-1510915933:297013..297558TCONS_00008992-exon-sc0000089-1510915933:297013..297558Clytia hemisphaericaexon
TCONS_00008992-exon-sc0000089-1575043694:297013..297558TCONS_00008992-exon-sc0000089-1575043694:297013..297558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:296331..297558 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	5.56571e-09	0.244334	0	0	0	0	0	0	0	1.45528	0	0	0.188872	0.0819685	0.194367	0.00110435	0	0	0	0.256906	0.163313	0	0	0	0	0	0.0581827	0.000272833	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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