TCONS_00009026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009026
Unique NameTCONS_00009026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009026 ID=TCONS_00009026|Name=TCONS_00009026|organism=Clytia hemisphaerica|type=transcript|length=690bp
NNGGTAAACGAGTCATCATGCACCCAAATTATGGACAAGGCGGAGCTTTG
AACGCTGATGTTGCCTTGATTGAATTGAGAACACCACTTCGATTGAACGA
CCGTGTTGTTAGAGCTTGTATGCCACAACAAGGTGTCTACCCAAAAGTCG
GGAAGAACTGTTACATCGCCGGATGGGGAACCACAACTCATCCAGGAAAC
TCACCAAACCGTCTCCAACAAGCCAAGCTTCCAGTTGTTGGAACTCCACA
CAGAGGTTGTCATAACAACAGAGAAGTCGTTTGCGTTGGTCTCGGATTCG
GAAAACAATCTGACGGTAAACAACATCCAAACGCATGCCGTGGTGATTCT
GGTGGCCCCTTGATGTGTCAACAATCAAACGGATCATGGACTGTGGAAGG
TGTTGCTAGTTATGTTTACACTTATTGTAAATACTACACAGCTTACGCTC
CAGTCAACAAATACTTGCCATGGATCAAGCAATATGTTCCAAATTTGTAA
ACTATACAATTTGTAGATGATATTCCATGTttatgattgataaaaaataa
taaaggcAAACTAAAACAATTGACAAGTCTTTGATGATCTTACGCACCAG
TTAAGAAAATGGATAGGATTCGGTACTTTTTGGAGGGTTTTTGAGATTTA
ATGAATATTGAGTTTCATGGATTTCTgggttcaattttgt
Run BLAST on NCBI

transcript from alignment at sc0000089:174218..179348-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009026 ID=TCONS_00009026|Name=TCONS_00009026|organism=Clytia hemisphaerica|type=transcript|length=5131bp|location=Sequence derived from alignment at sc0000089:174218..179348- (Clytia hemisphaerica)
NNGGTAAACGAGTCATCATGCACCCAAATTATGGACAAGGCGGAGCTTTG
AACGCTGATGTTGCCTTGATTGAATTGAGAACACCACTTCGATTGAACGA
CCGTGTTGTTAGAGCTTGTATGCCACAACAAGGTGTCTACCCACAAGCCG
GAAAGAACTGTTACATCGCCGGTAAGATATTTGGGAAGGTGATATCTATC
AGCCTATATCAACCCGGTCAGGGCTGATCCNGGAATGTCCCCAAATACGA
AAATCACTTAAACCATTCAGACCCAAAAAACCTTTTAAGCTGTTTTTGGC
CCAAATTTGGCCAAAAAAATTTTTCTTAAAAATCTGGCTCCGTCACATTT
TGGGCATTGCCATTTTGCATCATTGTGCAAAAAATCAGAAACNTTGAAAA
TATCTTATCATGTGTTAAAGACTCGAAAAAGAGACAATAAATCTCGTCAG
TCCAAAGCCTATTAAGCACATTGATAGCTTTGGTTTGAGTCAATTTAACT
TCCTTTCTAACTTTGTTCTCTAGGATGGGGAGCAACAAGTCACCCAAGTA
GAGGAGCTCCACCTAAACTCCAACAAGCCAAATTACCAGTTGTCCAATCT
CCACACAAAGGTTGTCATAACAACAGAGAAGTCGTTTGCGTTGGTCTCGG
ATTCGGAAGCCAATCTGACGGTAAACAACATCCAAACGCATGTCGTGGTG
ATTCTGGTGGTCCATTGATGTGTCAACAATCAAACGGATCATGGACTGTC
GAAGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACTACACAGCTTA
CGCTCCAGTCAACAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGAGCCAATCCTGAGAAAAGCTGGTAACAG
ACGGACGGACGGACGGACATGGGTTAATTTATAGAACCTCCACCGGGGCA
CCCGGCGGTAGGTCCAAAAATCAGTCATAGTGACAGATCATACCTCGAGT
AGAATAACAGTGGAAATATTATTAATTCATGATGCTTTTGACAATTTGAT
CGAATCATCAAGAGAATCAAAATCATTGGCCCTGTTTGAACAGTTTTTAC
TCATTGGTCTTCATAATAAGTTTTAGTTAATAATAAGGCCCGTATTTTAT
GAGTCGAGGGAGAATTTGAAATTTCGGGTCATAACTGAAGAGAGGAGGGT
CTCATTTCTGGAAGTTCATCTTCTGTTATATTTGATTTCCTACATCACGC
TATAGTCCCAATATCAAAATCTGTGACCTTTAAGATTAGGATTTTTGCGG
CGTCAAAAAATTGAGACCTGCATTTTCAGGCTTTTTAGACTTGTTTTCGA
CGTTGAGTACTTATTTTGAAGTCAATTCCAAGTTTCGCATTTTACAGTAA
TTTTAAAGGCTTTGAAACGCTGTAATTGCGTTTGTATTTTTAAGTAAGAA
GTAAATTGTTGTACATTTTTCTTGTTCAAAAGTTTGCACCCTATTCGATA
GACTTATAACCATATGTTTCATTTTTGACTCTCTTTACGACAAAGTTCAC
AAAAGTAAACGGACTCTCTTCCTCTCCTAAGGGCGTCTAAATATCTCTGC
TATCTTTTCTGACAAAAATTCATTACTTTATATTCACTAACTATTCACTA
TTATTTCTTGTCGACGAGACCTGCATTCTGTGGGCCACAAACCTGCATTT
TCTGGTACATCTTCCACTTTTATTAACGATAACGCTACAAAAAGTACTAA
GAAAGCAGTAGGAGTTTGGTACAGAAATTTTTTGAAAAGCTTAAGAAATA
TATTGAAAAAGTAAAACATTTATCCGTGAAAAACTGAACCTGAATTCTGT
GGGGCACCGATAGTTTTGACGCAAACTTGACGTTCTCATTGCCAAAAGTT
AAAAAGGTGAAAACGAAAAGAAACTAGCGGGAAAATGTTATCTTAATGAA
AGGTTTTATAGGATTTAGAAAATAATTTTCATAATCACAGAATCGTCAGA
ATTCGCATCAGAAAAAAACACCTGCATTCTGTGGGCCAGGGACTGTAAAG
AAATCTCAGCCAATACGAGTATGAAAGGTAAAATATAGCGGCAAATATTT
TTATTAAAGAGTCGGTGTATAACTTTACTCAACTGCACAAGTATAGAAAA
ATATTTAATTAACAGTCTTTAAAAGTAACATCATACAAAAGTAACAATTT
TTCGTCAATGAAATAAATTGAAAACGAGTTTTAGGAGGTTGAAGTTTGAA
ATCAGCAAATTAAAGTCGCATTAACCTCATTGGAATTTGGAAATTACGTT
AAAATGTAGCACATAAAAAGTTTATTATATTTGCTTAACGATCAGCTGGT
CAAAGAAGTAAAATGAGCAAATGTATATAAAGAGAAAGATTTCAAGGCTG
GTGGCAGTTGGGACAAACTGAAATCAGACAAAATGTTCAGATTCATGGTA
GGACTAGCATTAATCGCATCAGCATCTGGTAAGCGAATGCCCGAAAGTTT
TCGTCTCAAAAATTGTAAAGTATGATAGGTGTGAATGAAAAGTAGTGTGG
CACAAAATTTGTGTTACTATGTCATCCTTGCAGAATACTTTCAGCATTTC
AGGTGGGTGAGGAATAAAATGCACGCTCTGATTTTCTTGTCCAAATTTAC
GAAACTCCAGCAATTACAGGCCTCACAGATTTAAAGTTTAATTGATGGGT
TTTGTGTCATTGAAAACAATGCACAGGTTTAGTAAAAATTATACTTCCTA
TATACATGGCTTTTATCTCGATCTACTGTGTCCGGCTCAATCAATCCGTA
TAAGACAATGCTCGTAAATATATCGTATATTTCAGCTTGGTGGTCGAGTG
GTGGAAATGGTGGCGACAACAATGCAAATGCAAAATGTGGAATCTCCAAA
GTCGCACAAAGTCGAATTGTCAATGGTGTTGAAGCCAAAGCTGGAGCTTG
GCCATGGATTGTCTCTCTTCAATCTTCAGGAGGATCTCGAACCCACTTCT
GCGGTGGTACAATCTTGACTCCAAACTGGGTAGGTAAAATATTCGATCAC
AACTGCAAGAACACATAAAAGATTATAGATCTGGATATGTTCAAGTTTTT
GCACCATCAAAATTCCTTATAATCGCGTGTTTGATTTAGATCTTAACGGC
CAGCCATTGCGTGGAAAGAAATAAGAACAATCCAGGATATTTCCATGTCG
TCGCTGGAGCACATGATAAATCAAGACAAGAGAGTTCCAAACAGAAAGCT
GTTGGTAAACGAGTCATCATGCACCCAAATTATGGACAAGGCGGAGCTTT
GAACGCTGATGTTGCCTTGATTGAATTGAGAACACCACTTCGATTGAACG
ACCGTGTTGTCAAAGCTTGTATGCCACAACAAGGTGTCTACCCAAAAGTC
GGGAAGAACTGTTACATCGCCGGTGAGTTTCAATAATGGCTTGGATAAGT
TTTTATAGAAATTACTCTGAAAAGGGGTTATTTTTACATTCAACGCAGCC
GAATAAAAGAGAGCTTTCTGTTGCGAGCGTAAGTACGTATATATTGCTTC
ACTTTTTTGTAGGATGGGGAACCACAACTCATCCAGGAAACTCACCAAAC
CGTCTCCAACAAGCCAAGCTTCCAGTTGTTGGAACTCCACACAGAGGTTG
TCATAACAACAGAGAAGTCGTTTGCGTTGGTCTCGGATTCGGAAAACAAT
CTGACGGTAAACAACATCCAAACGCATGCCGTGGTGATTCTGGTGGCCCC
TTGATGTGTCAACAATCAAACGGATCATGGACTGTGGAAGGTGTTGCTAG
TTATGTTTACACTTATTGTAAATACTACACAGCTTACGCTCCAGTCAACA
AATACTTGCCATGGATCAAGCAATATGTTCCAAATTTGTAAACTATACAA
TTTGTAGATGATATTCCATGTTTATGATTGATAAAAAATAATAAAGGCAA
ACTAAAACAATTGACAAGTCTTTGATGATCTTACGCACCAGTTAAGAAAA
TGGATAGGATTCGGTACTTTTTGGAGGGTTTTTGAGATTTAATGAATATT
GAGTTTCATGGATTTCTGGGTTCAATTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005046XLOC_005046Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009026-exon-sc0000089-1575043694:179217..179348TCONS_00009026-exon-sc0000089-1575043694:179217..179348Clytia hemisphaericaexon
TCONS_00009026-exon-sc0000089-1575043694:174877..174915TCONS_00009026-exon-sc0000089-1575043694:174877..174915Clytia hemisphaericaexon
TCONS_00009026-exon-sc0000089-1575043694:174218..174736TCONS_00009026-exon-sc0000089-1575043694:174218..174736Clytia hemisphaericaexon
TCONS_00009026-exon-sc0000089-1510915933:179217..179348TCONS_00009026-exon-sc0000089-1510915933:179217..179348Clytia hemisphaericaexon
TCONS_00009026-exon-sc0000089-1510915933:174877..174915TCONS_00009026-exon-sc0000089-1510915933:174877..174915Clytia hemisphaericaexon
TCONS_00009026-exon-sc0000089-1510915933:174218..174736TCONS_00009026-exon-sc0000089-1510915933:174218..174736Clytia hemisphaericaexon
TCONS_00009026-exon-sc0000089-1491911889:179217..179348TCONS_00009026-exon-sc0000089-1491911889:179217..179348Clytia hemisphaericaexon
TCONS_00009026-exon-sc0000089-1491911889:174877..174915TCONS_00009026-exon-sc0000089-1491911889:174877..174915Clytia hemisphaericaexon
TCONS_00009026-exon-sc0000089-1491911889:174218..174736TCONS_00009026-exon-sc0000089-1491911889:174218..174736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:174218..179348 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457241	0	0.206119	0.590004	0.00377975	0	0	0.0275253	0.392719	0.0916165	0.285582	0.335258	1.37276	5.00512	20.3148	41.2214	0.879349	0.513644	174.204	153.247	0.411664	0	26.952	23.2006	0	0	0.869376	0.300344	0	0
Blast
[Close]
BLAST of TCONS_00009026 vs. Swiss-Prot (Human)
Match: KLKB1 (Plasma kallikrein OS=Homo sapiens GN=KLKB1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.349e-16
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 3 
Query:    6 KRVIMHPNYGQGGALNADVALIELRTPLRLNDRVVRACMPQQGVYPKVGKNCYIAGWGTTTHPGNSPNRLQQAKLPVVGTP-----HRGCHNNREVVCVGLGFGKQSDGKQHPNACRGDSGGPLMCQQSNGSWTVEG 401
            K +I+H NY      N D+ALI+L+ PL   +     C+P +G    +  NC++ GWG +   G   N LQ+  +P+V        ++     + +VC G   G    GK   +AC+GDSGGPL+C+  NG W + G
Sbjct:  467 KEIIIHQNYKVSEG-NHDIALIKLQAPLNYTEFQKPICLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEG----GK---DACKGDSGGPLVCKH-NGMWRLVG 594
The following BLAST results are available for this feature:
BLAST of TCONS_00009026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLKB12.349e-1634.31Plasma kallikrein OS=Homo sapiens GN=KLKB1 PE=1 SV... [more]
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