TCONS_00009027 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009027
Unique NameTCONS_00009027
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009027 ID=TCONS_00009027|Name=TCONS_00009027|organism=Clytia hemisphaerica|type=transcript|length=461bp
NNGGTAAACGAGTCATCATGCACCCAAATTATGGACAAGGCGGAGCTTTG
AACGCTGATGTTGCCTTGATTGAATTGAGAACACCACTTCGATTGAACGA
CCGTGTTGTTAGAGCTTGTATGCCACAACAAGGTGTCTACCCACAAGCCG
GAAAGAACTGTTACATCGCCGGATGGGGAGCAACAAGTCACCCAAGTAGA
GGAGCTCCACCTAAACTCCAACAAGCCAAATTACCAGTTGTCCAATCTCC
ACACAAAGGTTGTCATAACAACAGAGAAGTCGTTTGCGTTGGTCTCGGAT
TCGGAAGCCAATCTGACGGTAAACAACATCCAAACGCATGTCGTGGTGAT
TCTGGTGGTCCATTGATGTGTCAACAATCAAACGGATCATGGACTGTCGA
AGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACTACACAGCTTACG
CTCCAGTCAAC
Run BLAST on NCBI

transcript from alignment at sc0000089:178536..179348-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009027 ID=TCONS_00009027|Name=TCONS_00009027|organism=Clytia hemisphaerica|type=transcript|length=813bp|location=Sequence derived from alignment at sc0000089:178536..179348- (Clytia hemisphaerica)
NNGGTAAACGAGTCATCATGCACCCAAATTATGGACAAGGCGGAGCTTTG
AACGCTGATGTTGCCTTGATTGAATTGAGAACACCACTTCGATTGAACGA
CCGTGTTGTTAGAGCTTGTATGCCACAACAAGGTGTCTACCCACAAGCCG
GAAAGAACTGTTACATCGCCGGTAAGATATTTGGGAAGGTGATATCTATC
AGCCTATATCAACCCGGTCAGGGCTGATCCNGGAATGTCCCCAAATACGA
AAATCACTTAAACCATTCAGACCCAAAAAACCTTTTAAGCTGTTTTTGGC
CCAAATTTGGCCAAAAAAATTTTTCTTAAAAATCTGGCTCCGTCACATTT
TGGGCATTGCCATTTTGCATCATTGTGCAAAAAATCAGAAACNTTGAAAA
TATCTTATCATGTGTTAAAGACTCGAAAAAGAGACAATAAATCTCGTCAG
TCCAAAGCCTATTAAGCACATTGATAGCTTTGGTTTGAGTCAATTTAACT
TCCTTTCTAACTTTGTTCTCTAGGATGGGGAGCAACAAGTCACCCAAGTA
GAGGAGCTCCACCTAAACTCCAACAAGCCAAATTACCAGTTGTCCAATCT
CCACACAAAGGTTGTCATAACAACAGAGAAGTCGTTTGCGTTGGTCTCGG
ATTCGGAAGCCAATCTGACGGTAAACAACATCCAAACGCATGTCGTGGTG
ATTCTGGTGGTCCATTGATGTGTCAACAATCAAACGGATCATGGACTGTC
GAAGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACTACACAGCTTA
CGCTCCAGTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005046XLOC_005046Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009027-exon-sc0000089-1575043694:179178..179348TCONS_00009027-exon-sc0000089-1575043694:179178..179348Clytia hemisphaericaexon
TCONS_00009027-exon-sc0000089-1575043694:178536..178825TCONS_00009027-exon-sc0000089-1575043694:178536..178825Clytia hemisphaericaexon
TCONS_00009027-exon-sc0000089-1510915933:179178..179348TCONS_00009027-exon-sc0000089-1510915933:179178..179348Clytia hemisphaericaexon
TCONS_00009027-exon-sc0000089-1510915933:178536..178825TCONS_00009027-exon-sc0000089-1510915933:178536..178825Clytia hemisphaericaexon
TCONS_00009027-exon-sc0000089-1491911889:179178..179348TCONS_00009027-exon-sc0000089-1491911889:179178..179348Clytia hemisphaericaexon
TCONS_00009027-exon-sc0000089-1491911889:178536..178825TCONS_00009027-exon-sc0000089-1491911889:178536..178825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:178536..179348 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.161643	1.13174	1.01449	0	0.150027	0.239999	0.338902	0.647499	0.146951	0	1.1703	51.3857	51.7284	386.719	997.801	6.58742	10.2342	1385.89	1412.48	38.5082	37.065	762.572	793.633	271.211	358.016	2.11937	1.14855	0.894107	4.18477
Blast
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BLAST of TCONS_00009027 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 8.839e-17
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 3 
Query:    9 RVIMHPNYGQGGALNADVALIELRTPLRLNDRVVRACMPQQGVYPQAGKNCYIAGWGATSHPSRGAPPKLQQAKLPVVQSPHKGCHNNREVVCVGLGFGSQSDGKQHPNACRGDSGGPLMCQQSNGSWTVEG 404
            +V  +P +     +N D+ L++L TP R +  V   C+P       AG  C   GWG T + +   P KLQQA LP++ +        R +  V +       G    ++C GDSGGPL+CQ+ +G+WT+ G
Sbjct:  105 KVFKNPKFSIL-TVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMI-----CAGASGVSSCMGDSGGPLVCQK-DGAWTLVG 229
The following BLAST results are available for this feature:
BLAST of TCONS_00009027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB18.839e-1733.33Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 S... [more]
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